Wall clock time and date at job start Tue Mar 31 2020 13:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47379 * 2 1 4 4 H 1.08996 * 109.47030 * 305.61449 * 3 2 1 5 5 C 1.50701 * 109.46986 * 185.61499 * 3 2 1 6 6 H 1.07999 * 120.00435 * 239.99937 * 5 3 2 7 7 C 1.37876 * 119.99913 * 59.99852 * 5 3 2 8 8 N 1.31515 * 120.00104 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99932 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46884 * 60.00365 * 9 7 5 11 11 H 1.48501 * 109.47015 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47511 * 300.00054 * 9 7 5 13 13 N 1.46898 * 109.47107 * 65.61850 * 3 2 1 14 14 C 1.46903 * 110.99696 * 203.79814 * 13 3 2 15 15 H 1.08997 * 109.47113 * 326.29576 * 14 13 3 16 16 C 1.53008 * 109.47057 * 86.29279 * 14 13 3 17 17 C 1.50695 * 109.47213 * 206.28791 * 14 13 3 18 18 O 1.21288 * 119.99571 * 0.02562 * 17 14 13 19 19 N 1.34779 * 120.00206 * 179.97438 * 17 14 13 20 20 C 1.47066 * 120.86821 * 180.02562 * 19 17 14 21 21 C 1.53191 * 108.57380 * 115.10472 * 20 19 17 22 22 C 1.51400 * 109.07000 * 45.53510 * 21 20 19 23 23 S 1.75899 * 125.06351 * 161.79401 * 22 21 20 24 24 C 1.75714 * 91.11401 * 179.70689 * 23 22 21 25 25 C 1.32928 * 109.58938 * 0.12529 * 24 23 22 26 26 C 1.34644 * 125.09473 * 341.81892 * 22 21 20 27 27 C 1.46968 * 120.86909 * 359.72867 * 19 17 14 28 28 H 1.08998 * 109.47407 * 174.02687 * 1 2 3 29 29 H 1.09001 * 109.46692 * 294.03234 * 1 2 3 30 30 H 1.09006 * 109.46729 * 54.02464 * 1 2 3 31 31 H 1.09000 * 109.46934 * 239.99900 * 2 1 3 32 32 H 1.09006 * 109.46981 * 119.99944 * 2 1 3 33 33 H 0.97006 * 119.99926 * 179.97438 * 8 7 5 34 34 H 1.00904 * 110.99820 * 327.74892 * 13 3 2 35 35 H 1.09000 * 109.47093 * 186.08654 * 16 14 13 36 36 H 1.09005 * 109.46993 * 306.08686 * 16 14 13 37 37 H 1.08999 * 109.46751 * 66.08470 * 16 14 13 38 38 H 1.09003 * 109.62015 * 234.83020 * 20 19 17 39 39 H 1.09004 * 109.62351 * 355.38121 * 20 19 17 40 40 H 1.09004 * 109.53695 * 165.40659 * 21 20 19 41 41 H 1.08990 * 109.54020 * 285.57170 * 21 20 19 42 42 H 1.08004 * 125.20543 * 180.09572 * 24 23 22 43 43 H 1.08000 * 122.17146 * 180.12151 * 25 24 23 44 44 H 1.09005 * 109.80053 * 344.68748 * 27 19 17 45 45 H 1.09003 * 109.79763 * 105.54391 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5970 1.9845 -0.8354 5 6 3.5407 1.4446 -0.1390 6 1 4.1539 1.8864 0.6325 7 6 4.1307 0.8826 -1.2512 8 7 3.3841 0.3451 -2.1909 9 14 5.9907 0.8860 -1.4238 10 1 6.5948 0.1478 -0.2857 11 1 6.3706 0.2270 -2.6993 12 1 6.4854 2.2861 -1.4242 13 7 1.6643 2.0947 1.2615 14 6 1.6116 3.5543 1.1040 15 1 2.3713 3.8703 0.3891 16 6 0.2286 3.9625 0.5924 17 6 1.8692 4.2127 2.4348 18 8 2.0768 3.5329 3.4176 19 7 1.8700 5.5570 2.5328 20 6 2.1198 6.2194 3.8218 21 6 3.4296 7.0073 3.7198 22 6 3.4429 7.7782 2.4168 23 16 4.4904 9.1462 2.0627 24 6 3.8016 9.3011 0.4537 25 6 2.8696 8.3700 0.2763 26 6 2.6547 7.5196 1.3563 27 6 1.6277 6.3991 1.3529 28 1 -0.3634 -1.0220 -0.1069 29 1 -0.3633 0.4185 0.9386 30 1 -0.3633 0.6037 -0.8317 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.7993 -0.0500 -2.9736 34 1 0.7864 1.7363 1.6063 35 1 0.2230 5.0302 0.3729 36 1 -0.0027 3.4039 -0.3146 37 1 -0.5196 3.7443 1.3543 38 1 1.2995 6.9007 4.0482 39 1 2.2041 5.4696 4.6085 40 1 3.5024 7.7032 4.5557 41 1 4.2729 6.3174 3.7453 42 1 4.0909 10.0400 -0.2790 43 1 2.3155 8.2794 -0.6462 44 1 1.7345 5.8038 0.4461 45 1 0.6245 6.8227 1.4014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565667255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:18 Heat of formation + Delta-G solvation = 6.096088 kcal Electronic energy + Delta-G solvation = -25789.632333 eV Core-core repulsion = 22319.847867 eV Total energy + Delta-G solvation = -3469.784465 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.23849 -38.26241 -36.43232 -35.24251 -33.52574 -32.17292 -31.31499 -29.60690 -28.57153 -26.21555 -26.07079 -24.06808 -23.52439 -22.69502 -21.58310 -19.63077 -19.06709 -18.36276 -17.26685 -16.36081 -16.22810 -16.05946 -15.24593 -14.97662 -14.80328 -14.49492 -14.09344 -13.75059 -13.51051 -13.32585 -13.24713 -13.02334 -12.66341 -12.49170 -12.36183 -12.04756 -11.93330 -11.78373 -11.75368 -11.40867 -11.24147 -11.13340 -10.86893 -10.82482 -10.78713 -10.62991 -9.94237 -9.88558 -9.62728 -9.14545 -9.03999 -8.69584 -8.59431 -8.39573 -8.33641 -7.19693 -5.95858 -3.99730 0.88124 1.49284 1.86789 2.53871 3.05629 3.15022 3.35750 3.39358 3.44533 4.46347 4.53075 4.62421 4.87981 4.90342 5.11235 5.13655 5.21525 5.24651 5.33044 5.36874 5.43101 5.50284 5.55764 5.64408 5.78483 5.87224 5.92937 6.00891 6.15853 6.17543 6.18841 6.21672 6.36088 6.41452 6.44331 6.59040 6.86397 7.08437 7.17289 7.44350 7.61775 7.79482 7.93853 8.26684 8.39325 8.64055 8.76892 9.08838 9.65505 11.09142 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012422 B = 0.004066 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.593731 B = 6885.256924 C = 8026.674117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.222 3.778 4 H 0.004 0.996 5 C -0.494 4.494 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.662 5.662 14 C 0.077 3.923 15 H 0.108 0.892 16 C -0.186 4.186 17 C 0.527 3.473 18 O -0.516 6.516 19 N -0.622 5.622 20 C 0.119 3.881 21 C -0.066 4.066 22 C -0.163 4.163 23 S 0.087 5.913 24 C -0.215 4.215 25 C -0.119 4.119 26 C -0.126 4.126 27 C 0.172 3.828 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.042 0.958 31 H 0.100 0.900 32 H 0.042 0.958 33 H 0.260 0.740 34 H 0.324 0.676 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.164 0.836 43 H 0.142 0.858 44 H 0.106 0.894 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.927 17.873 5.934 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.115 3.885 4 H 0.022 0.978 5 C -0.533 4.533 6 H 0.078 0.922 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.205 1.205 13 N -0.294 5.294 14 C -0.037 4.037 15 H 0.126 0.874 16 C -0.246 4.246 17 C 0.315 3.685 18 O -0.389 6.389 19 N -0.359 5.359 20 C -0.006 4.006 21 C -0.106 4.106 22 C -0.280 4.280 23 S 0.352 5.648 24 C -0.350 4.350 25 C -0.150 4.150 26 C -0.138 4.138 27 C 0.046 3.954 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.118 0.882 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.143 0.857 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.182 0.818 43 H 0.160 0.840 44 H 0.124 0.876 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.995 18.156 7.324 19.805 hybrid contribution -0.697 -0.418 -1.688 1.874 sum -3.693 17.738 5.636 18.975 Atomic orbital electron populations 1.21884 0.99585 0.99773 0.99484 1.21753 0.91242 1.00167 1.03205 1.19201 0.95436 0.90095 0.83801 0.97836 1.21195 0.91297 1.36689 1.04127 0.92181 1.24921 0.97970 0.95574 0.95835 1.69860 1.34704 1.39486 1.09551 0.86642 0.85964 0.78159 0.77135 1.20263 1.21436 1.20481 1.60332 1.36010 0.99745 1.33268 1.21339 0.97358 0.92190 0.92843 0.87429 1.22727 0.97519 1.02125 1.02188 1.21137 0.75195 0.80354 0.91819 1.90639 1.47138 1.62248 1.38888 1.48140 1.73180 1.05830 1.08713 1.21465 0.95371 0.96501 0.87215 1.20697 1.00050 0.97728 0.92093 1.24688 1.01601 1.01170 1.00590 1.84141 1.40875 1.29261 1.10504 1.25309 1.03580 1.05794 1.00365 1.19930 0.99765 0.95605 0.99694 1.19823 1.00702 0.99885 0.93441 1.20685 0.95487 0.89446 0.89759 0.94368 0.94569 0.93917 0.88165 0.93889 0.93047 0.85706 0.91789 0.91169 0.92623 0.91220 0.88132 0.89687 0.89572 0.81817 0.84049 0.87577 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.63 37.16 0.36 -2.50 16 2 C -0.13 -2.94 5.37 -26.73 -0.14 -3.08 16 3 C 0.22 5.40 1.83 -68.87 -0.13 5.27 16 4 H 0.00 0.10 7.19 -51.93 -0.37 -0.27 16 5 C -0.49 -13.64 8.44 -34.44 -0.29 -13.93 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.06 1.58 5.29 -17.82 -0.09 1.49 16 8 N -0.90 -25.11 11.29 55.43 0.63 -24.48 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.66 -14.37 5.53 -102.17 -0.57 -14.94 16 14 C 0.08 1.42 1.99 -68.86 -0.14 1.28 16 15 H 0.11 2.16 6.99 -51.93 -0.36 1.79 16 16 C -0.19 -2.68 8.68 37.16 0.32 -2.36 16 17 C 0.53 9.49 7.17 -10.99 -0.08 9.41 16 18 O -0.52 -11.14 15.86 5.55 0.09 -11.05 16 19 N -0.62 -8.75 2.92 -173.34 -0.51 -9.26 16 20 C 0.12 1.42 6.40 -3.63 -0.02 1.40 16 21 C -0.07 -0.73 6.43 -27.44 -0.18 -0.90 16 22 C -0.16 -1.94 6.39 -35.24 -0.23 -2.16 16 23 S 0.09 0.90 23.31 -107.50 -2.51 -1.60 16 24 C -0.22 -2.13 11.20 28.90 0.32 -1.80 16 25 C -0.12 -1.25 10.00 -41.09 -0.41 -1.67 16 26 C -0.13 -1.49 5.85 -104.93 -0.61 -2.10 16 27 C 0.17 2.00 4.92 -4.30 -0.02 1.98 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.63 6.66 -51.93 -0.35 0.28 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 32 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 34 H 0.32 6.61 6.34 -39.29 -0.25 6.36 16 35 H 0.06 0.73 4.99 -51.93 -0.26 0.47 16 36 H 0.07 1.07 7.45 -51.93 -0.39 0.69 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.10 1.32 7.02 -51.93 -0.36 0.95 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 43 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.11 1.27 5.02 -51.93 -0.26 1.01 16 45 H 0.08 0.76 7.96 -51.93 -0.41 0.34 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -31.34 364.18 -10.41 -41.75 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.67 Total: 7.09 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -1.34 Total: -9.69 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.45 Total: -48.68 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.51 Total: -1.60 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.34 -10.41 -41.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565667255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.844 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds