Wall clock time and date at job start Tue Mar 31 2020 13:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46738 * 2 1 4 4 H 1.08997 * 109.47567 * 54.73882 * 3 2 1 5 5 C 1.50701 * 109.46747 * 174.73532 * 3 2 1 6 6 H 1.08002 * 120.00108 * 120.00066 * 5 3 2 7 7 C 1.37874 * 120.00250 * 299.99861 * 5 3 2 8 8 N 1.31510 * 120.00025 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00332 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46973 * 59.99526 * 9 7 5 11 11 H 1.48492 * 109.47327 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46822 * 299.99926 * 9 7 5 13 13 N 1.46900 * 109.47111 * 294.73461 * 3 2 1 14 14 C 1.46898 * 111.00005 * 156.87045 * 13 3 2 15 15 H 1.09007 * 109.47122 * 33.68707 * 14 13 3 16 16 C 1.52994 * 109.47155 * 273.68684 * 14 13 3 17 17 C 1.50697 * 109.47157 * 153.68269 * 14 13 3 18 18 O 1.21282 * 120.00118 * 24.81123 * 17 14 13 19 19 N 1.34779 * 119.99808 * 204.80601 * 17 14 13 20 20 C 1.47073 * 120.87051 * 183.97663 * 19 17 14 21 21 C 1.53682 * 108.30593 * 115.09858 * 20 19 17 22 22 C 1.51399 * 109.04406 * 45.69158 * 21 20 19 23 23 S 1.75906 * 125.06263 * 162.04842 * 22 21 20 24 24 C 1.75708 * 91.11539 * 179.58589 * 23 22 21 25 25 C 1.32926 * 109.59332 * 0.08191 * 24 23 22 26 26 C 1.34649 * 125.10254 * 341.80939 * 22 21 20 27 27 C 1.46974 * 120.87772 * 4.26774 * 19 17 14 28 28 H 1.09007 * 109.47352 * 305.27404 * 1 2 3 29 29 H 1.08995 * 109.47531 * 65.27508 * 1 2 3 30 30 H 1.09003 * 109.47056 * 185.28063 * 1 2 3 31 31 H 1.08997 * 109.47161 * 239.99970 * 2 1 3 32 32 H 1.09007 * 109.46891 * 119.99654 * 2 1 3 33 33 H 0.97004 * 120.00037 * 179.97438 * 8 7 5 34 34 H 1.00893 * 111.00084 * 32.91447 * 13 3 2 35 35 H 1.09004 * 109.47391 * 55.38632 * 16 14 13 36 36 H 1.09002 * 109.47595 * 175.39183 * 16 14 13 37 37 H 1.08996 * 109.47163 * 295.38834 * 16 14 13 38 38 H 1.08993 * 109.62616 * 234.82064 * 20 19 17 39 39 H 1.09007 * 109.62042 * 355.37646 * 20 19 17 40 40 H 1.08995 * 109.64589 * 285.77035 * 21 20 19 41 41 H 1.08998 * 109.52704 * 165.54485 * 21 20 19 42 42 H 1.07999 * 125.20488 * 180.11421 * 24 23 22 43 43 H 1.07997 * 122.17274 * 180.08639 * 25 24 23 44 44 H 1.08998 * 109.79270 * 344.63309 * 27 19 17 45 45 H 1.09000 * 109.80265 * 105.49841 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6017 1.9829 0.8391 5 6 3.5413 1.4445 0.1304 6 1 4.1499 1.8879 -0.6438 7 6 4.1378 0.8804 1.2379 8 7 3.3967 0.3409 2.1809 9 14 5.9988 0.8835 1.3999 10 1 6.4933 2.2837 1.4001 11 1 6.3861 0.2220 2.6717 12 1 6.5964 0.1477 0.2567 13 7 1.6567 2.0973 -1.2579 14 6 1.6202 3.5575 -1.1015 15 1 2.3906 3.8666 -0.3950 16 6 0.2470 3.9799 -0.5756 17 6 1.8704 4.2120 -2.4356 18 8 1.6191 3.6147 -3.4608 19 7 2.3732 5.4613 -2.4896 20 6 2.5437 6.1513 -3.7772 21 6 1.6055 7.3682 -3.8008 22 6 1.7199 8.1058 -2.4836 23 16 1.2029 9.7640 -2.2057 24 6 1.7060 9.6755 -0.5246 25 6 2.2104 8.4717 -0.2730 26 6 2.2284 7.5895 -1.3487 27 6 2.7715 6.1677 -1.2638 28 1 -0.3634 0.5935 0.8390 29 1 -0.3634 0.4298 -0.9334 30 1 -0.3633 -1.0233 0.0946 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 3.8165 -0.0563 2.9600 34 1 0.7717 1.7473 -1.5928 35 1 0.0311 3.4436 0.3485 36 1 0.2462 5.0526 -0.3820 37 1 -0.5148 3.7444 -1.3187 38 1 3.5773 6.4811 -3.8818 39 1 2.2886 5.4737 -4.5921 40 1 0.5774 7.0356 -3.9440 41 1 1.8907 8.0324 -4.6165 42 1 1.6183 10.4765 0.1946 43 1 2.5818 8.1962 0.7030 44 1 2.3510 5.6632 -0.3939 45 1 3.8586 6.1916 -1.1880 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565667256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:22 Heat of formation + Delta-G solvation = 0.318465 kcal Electronic energy + Delta-G solvation = -25758.147141 eV Core-core repulsion = 22288.112139 eV Total energy + Delta-G solvation = -3470.035002 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.18569 -38.29530 -36.43859 -35.24262 -33.36789 -32.19370 -31.37736 -29.56997 -28.62867 -26.12276 -26.07242 -24.30107 -23.41824 -22.71281 -21.58162 -19.63554 -19.03202 -18.30898 -17.25930 -16.39573 -16.20908 -16.09438 -15.43850 -14.92149 -14.78386 -14.22712 -14.07128 -14.00003 -13.49459 -13.31720 -13.23534 -12.87020 -12.67677 -12.58882 -12.49039 -11.99776 -11.89817 -11.81146 -11.68994 -11.54546 -11.31994 -11.14618 -10.88971 -10.86567 -10.81348 -10.64884 -9.97100 -9.91930 -9.63206 -9.17151 -9.06352 -8.73450 -8.61119 -8.40571 -8.36393 -7.22511 -5.98286 -4.02831 0.83614 1.44664 1.82137 2.51075 3.08454 3.11009 3.32531 3.37479 3.41437 4.43345 4.50873 4.61492 4.85758 4.87676 5.10164 5.13129 5.25390 5.26979 5.31916 5.40384 5.48242 5.53701 5.59433 5.68325 5.77900 5.84716 5.90627 6.03250 6.12475 6.18345 6.19838 6.22044 6.34373 6.40814 6.44884 6.59769 6.87126 7.08059 7.16992 7.44720 7.61706 7.78074 7.90643 8.25314 8.37648 8.60872 8.74717 9.05059 9.62468 11.06698 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.003640 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.729402 B = 7690.516639 C = 8377.187454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.221 3.779 4 H 0.004 0.996 5 C -0.496 4.496 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.666 5.666 14 C 0.075 3.925 15 H 0.104 0.896 16 C -0.173 4.173 17 C 0.534 3.466 18 O -0.528 6.528 19 N -0.621 5.621 20 C 0.118 3.882 21 C -0.063 4.063 22 C -0.165 4.165 23 S 0.083 5.917 24 C -0.215 4.215 25 C -0.119 4.119 26 C -0.121 4.121 27 C 0.171 3.829 28 H 0.042 0.958 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.100 0.900 33 H 0.260 0.740 34 H 0.327 0.673 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.164 0.836 43 H 0.143 0.857 44 H 0.104 0.896 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.822 17.868 -5.654 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.114 3.886 4 H 0.022 0.978 5 C -0.535 4.535 6 H 0.078 0.922 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.298 5.298 14 C -0.039 4.039 15 H 0.122 0.878 16 C -0.232 4.232 17 C 0.323 3.677 18 O -0.402 6.402 19 N -0.356 5.356 20 C -0.007 4.007 21 C -0.103 4.103 22 C -0.283 4.283 23 S 0.349 5.651 24 C -0.350 4.350 25 C -0.150 4.150 26 C -0.134 4.134 27 C 0.046 3.954 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.146 0.854 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.182 0.818 43 H 0.161 0.839 44 H 0.122 0.878 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.978 18.558 -7.165 20.506 hybrid contribution 0.852 -0.712 1.757 2.078 sum -4.126 17.846 -5.408 19.099 Atomic orbital electron populations 1.21889 0.99577 0.99769 0.99574 1.21744 0.91266 1.00122 1.03168 1.19207 0.95383 0.90107 0.83907 0.97826 1.21176 0.91207 1.36855 1.04285 0.92216 1.24929 0.98007 0.95541 0.95802 1.69858 1.34787 1.39198 1.09604 0.86634 0.85879 0.78144 0.77166 1.20443 1.21454 1.20292 1.60378 1.35655 0.99936 1.33849 1.21387 0.97709 0.92111 0.92686 0.87797 1.22412 0.97278 1.01499 1.02030 1.21073 0.74901 0.79427 0.92324 1.90609 1.50995 1.62096 1.36492 1.48105 1.65227 1.15586 1.06690 1.21582 0.98668 0.92953 0.87491 1.20767 1.01585 0.96076 0.91902 1.24679 1.06895 0.96992 0.99716 1.84133 1.63188 1.11101 1.06718 1.25308 1.08647 1.01990 0.99063 1.19969 1.02115 0.92826 1.00088 1.19915 1.03213 0.97696 0.92544 1.20652 0.99618 0.86937 0.88226 0.93924 0.94487 0.94362 0.93900 0.88189 0.93001 0.85378 0.91113 0.92550 0.92558 0.91033 0.88102 0.89871 0.89687 0.81829 0.83944 0.87779 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.64 37.16 0.36 -2.54 16 2 C -0.12 -2.91 5.38 -26.73 -0.14 -3.05 16 3 C 0.22 5.32 1.85 -68.86 -0.13 5.20 16 4 H 0.00 0.11 7.20 -51.93 -0.37 -0.27 16 5 C -0.50 -13.33 8.40 -34.44 -0.29 -13.62 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.56 5.29 -17.82 -0.09 1.46 16 8 N -0.89 -24.69 11.29 55.43 0.63 -24.06 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.67 -14.41 5.66 -102.17 -0.58 -14.99 16 14 C 0.08 1.39 1.95 -68.87 -0.13 1.26 16 15 H 0.10 1.99 5.91 -51.93 -0.31 1.68 16 16 C -0.17 -2.70 9.01 37.15 0.33 -2.37 16 17 C 0.53 9.67 6.92 -10.99 -0.08 9.59 16 18 O -0.53 -11.16 16.05 5.56 0.09 -11.07 16 19 N -0.62 -9.03 2.91 -172.76 -0.50 -9.53 16 20 C 0.12 1.43 6.44 -3.37 -0.02 1.41 16 21 C -0.06 -0.65 6.44 -27.19 -0.18 -0.83 16 22 C -0.17 -1.84 6.39 -35.24 -0.23 -2.06 16 23 S 0.08 0.79 23.31 -107.50 -2.51 -1.71 16 24 C -0.21 -1.98 11.20 28.90 0.32 -1.65 16 25 C -0.12 -1.21 10.00 -41.09 -0.41 -1.62 16 26 C -0.12 -1.39 5.86 -104.70 -0.61 -2.00 16 27 C 0.17 2.15 6.37 -4.07 -0.03 2.13 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.66 6.62 -51.93 -0.34 0.31 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.10 2.60 5.95 -51.93 -0.31 2.30 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.33 6.80 6.31 -39.30 -0.25 6.55 16 35 H 0.07 1.14 7.46 -51.93 -0.39 0.76 16 36 H 0.06 0.77 7.55 -51.93 -0.39 0.38 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 1.33 7.02 -51.93 -0.36 0.97 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.10 1.32 5.15 -51.93 -0.27 1.05 16 45 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -30.25 367.75 -10.44 -40.68 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.77 Total: 7.81 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -1.32 Total: -8.70 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.45 Total: -48.58 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.51 Total: -1.71 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.25 -10.44 -40.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565667256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.001 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds