Wall clock time and date at job start Tue Mar 31 2020 13:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47528 * 2 1 4 4 H 1.08997 * 109.47508 * 185.40457 * 3 2 1 5 5 C 1.50699 * 109.46728 * 305.41016 * 3 2 1 6 6 H 1.08001 * 119.99653 * 120.00080 * 5 3 2 7 7 C 1.37869 * 120.00065 * 299.99330 * 5 3 2 8 8 N 1.31523 * 120.00240 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00190 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47060 * 89.99658 * 9 7 5 11 11 H 1.48497 * 109.47312 * 209.99883 * 9 7 5 12 12 H 1.48502 * 109.47051 * 329.99828 * 9 7 5 13 13 N 1.46901 * 109.46768 * 65.40769 * 3 2 1 14 14 C 1.46898 * 111.00258 * 80.30360 * 13 3 2 15 15 C 1.52994 * 109.47290 * 184.94215 * 14 13 3 16 16 C 1.50706 * 109.47004 * 180.02562 * 15 14 13 17 17 O 1.21298 * 120.00137 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00032 * 179.97438 * 16 15 14 19 19 C 1.40132 * 120.00195 * 185.34791 * 18 16 15 20 20 C 1.38647 * 120.09947 * 24.52683 * 19 18 16 21 21 C 1.38253 * 120.01085 * 179.97438 * 20 19 18 22 22 C 1.38297 * 120.20893 * 359.97438 * 21 20 19 23 23 C 1.38200 * 120.20092 * 0.02562 * 22 21 20 24 24 C 1.38788 * 119.98716 * 359.97438 * 23 22 21 25 25 S 1.76198 * 120.10336 * 180.02562 * 24 23 22 26 26 C 1.81400 * 103.00039 * 359.97438 * 25 24 23 27 27 H 1.09005 * 109.46929 * 184.98643 * 1 2 3 28 28 H 1.08997 * 109.47266 * 304.99033 * 1 2 3 29 29 H 1.09001 * 109.46599 * 64.98791 * 1 2 3 30 30 H 1.09004 * 109.47396 * 239.99509 * 2 1 3 31 31 H 1.09001 * 109.47168 * 120.00188 * 2 1 3 32 32 H 0.96998 * 120.00191 * 180.02562 * 8 7 5 33 33 H 1.00904 * 111.00360 * 316.35241 * 13 3 2 34 34 H 1.09011 * 109.46669 * 64.94168 * 14 13 3 35 35 H 1.08999 * 109.47195 * 304.94759 * 14 13 3 36 36 H 1.08994 * 109.47177 * 60.00602 * 15 14 13 37 37 H 1.09004 * 109.47453 * 299.99659 * 15 14 13 38 38 H 0.97003 * 119.99918 * 5.34592 * 18 16 15 39 39 H 1.08009 * 119.99807 * 0.25819 * 20 19 18 40 40 H 1.08005 * 119.89188 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.90167 * 179.97438 * 22 21 20 42 42 H 1.07997 * 120.00667 * 180.02562 * 23 22 21 43 43 H 1.09002 * 109.46826 * 180.02562 * 26 25 24 44 44 H 1.08997 * 109.47177 * 299.99843 * 26 25 24 45 45 H 1.09005 * 109.46734 * 60.00151 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1257 1.4440 -0.0968 5 6 1.4314 2.1904 -1.1580 6 1 0.8230 3.0642 -0.9765 7 6 1.6512 1.7595 -2.4490 8 7 1.1204 2.4126 -3.4598 9 14 2.7030 0.2480 -2.7629 10 1 1.8417 -0.9616 -2.7700 11 1 3.3808 0.3808 -4.0774 12 1 3.7228 0.1233 -1.6905 13 7 1.6599 2.0962 1.2594 14 6 2.5797 1.7261 2.3433 15 6 2.0827 2.3247 3.6606 16 6 3.0267 1.9455 4.7725 17 8 4.0014 1.2638 4.5345 18 7 2.7885 2.3646 6.0311 19 6 3.7226 2.1079 7.0437 20 6 5.0563 1.9046 6.7242 21 6 5.9764 1.6520 7.7247 22 6 5.5712 1.6016 9.0460 23 6 4.2440 1.8030 9.3744 24 6 3.3134 2.0572 8.3766 25 16 1.6206 2.3151 8.7919 26 6 1.6138 2.1499 10.5983 27 1 -0.3633 -1.0238 0.0893 28 1 -0.3634 0.5893 0.8419 29 1 -0.3632 0.4345 -0.9313 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.2747 2.1091 -4.3680 33 1 0.7055 1.8799 1.5054 34 1 3.5754 2.1107 2.1221 35 1 2.6207 0.6403 2.4302 36 1 1.0872 1.9401 3.8818 37 1 2.0418 3.4106 3.5738 38 1 1.9705 2.8440 6.2361 39 1 5.3774 1.9481 5.6938 40 1 7.0148 1.4935 7.4735 41 1 6.2941 1.4035 9.8236 42 1 3.9312 1.7635 10.4073 43 1 0.5999 2.2923 10.9723 44 1 1.9659 1.1557 10.8735 45 1 2.2714 2.9019 11.0344 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571414465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:02 Heat of formation + Delta-G solvation = -3.228989 kcal Electronic energy + Delta-G solvation = -24227.419301 eV Core-core repulsion = 20757.230470 eV Total energy + Delta-G solvation = -3470.188831 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.76086 -38.71483 -36.94225 -35.03562 -33.32434 -31.70645 -31.57490 -30.32594 -29.28200 -28.81946 -26.54483 -23.76597 -23.28525 -23.19206 -21.93615 -20.33813 -19.51863 -18.49381 -17.30897 -17.09733 -16.41775 -15.93514 -15.73683 -15.27972 -14.97754 -14.73969 -14.41567 -14.32254 -14.24209 -13.93255 -13.62717 -13.27586 -13.07705 -12.94431 -12.83551 -12.54923 -12.34826 -12.28278 -11.74737 -11.68135 -11.23919 -10.94984 -10.84343 -10.67482 -10.61904 -10.50018 -10.37435 -10.05378 -9.87374 -9.80358 -9.33877 -9.08525 -8.58482 -8.51300 -7.65300 -7.43264 -6.01992 -3.98006 0.86509 1.04257 1.08159 1.96843 2.46927 2.80972 3.29422 3.40740 3.41500 3.48069 4.44083 4.44942 4.52246 4.57950 4.58502 4.76134 4.97029 5.00900 5.11973 5.19179 5.22103 5.23071 5.29115 5.48934 5.57239 5.70068 5.87149 5.93633 5.94436 6.00547 6.13985 6.17943 6.21334 6.28228 6.39060 6.59591 6.70533 6.83172 6.84511 7.03608 7.13137 7.24769 7.74091 7.88403 7.95183 8.33794 8.71202 9.08134 9.61236 11.11341 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023691 B = 0.002373 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.613759 B =11794.095256 C =12457.269337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.161 4.161 3 C 0.186 3.814 4 H 0.036 0.964 5 C -0.491 4.491 6 H 0.081 0.919 7 C 0.069 3.931 8 N -0.901 5.901 9 Si 0.879 3.121 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.269 1.269 13 N -0.673 5.673 14 C 0.070 3.930 15 C -0.138 4.138 16 C 0.518 3.482 17 O -0.513 6.513 18 N -0.672 5.672 19 C 0.177 3.823 20 C -0.117 4.117 21 C -0.100 4.100 22 C -0.126 4.126 23 C -0.113 4.113 24 C -0.124 4.124 25 S -0.124 6.124 26 C -0.139 4.139 27 H 0.029 0.971 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.034 0.966 32 H 0.263 0.737 33 H 0.331 0.669 34 H 0.074 0.926 35 H 0.030 0.970 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.413 0.587 39 H 0.153 0.847 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.109 0.891 44 H 0.084 0.916 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.225 -0.699 29.889 30.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.200 4.200 3 C 0.077 3.923 4 H 0.053 0.947 5 C -0.529 4.529 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.540 5.540 9 Si 0.710 3.290 10 H -0.206 1.206 11 H -0.225 1.225 12 H -0.194 1.194 13 N -0.304 5.304 14 C -0.060 4.060 15 C -0.178 4.178 16 C 0.307 3.693 17 O -0.388 6.388 18 N -0.316 5.316 19 C 0.076 3.924 20 C -0.139 4.139 21 C -0.121 4.121 22 C -0.146 4.146 23 C -0.137 4.137 24 C -0.238 4.238 25 S 0.116 5.884 26 C -0.308 4.308 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.149 0.851 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.250 0.750 39 H 0.171 0.829 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.127 0.873 44 H 0.103 0.897 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.152 -0.325 28.639 28.814 hybrid contribution 0.943 -1.909 0.940 2.328 sum 4.096 -2.234 29.579 29.945 Atomic orbital electron populations 1.21590 0.95810 0.98658 1.02966 1.22512 0.97189 1.01242 0.99086 1.19671 0.96262 0.88192 0.88146 0.94657 1.20871 1.31190 1.12714 0.88158 0.90048 1.24876 0.95505 0.96610 0.96172 1.69881 1.45055 1.40238 0.98864 0.86982 0.81252 0.83843 0.76908 1.20646 1.22457 1.19406 1.60740 1.05011 1.62246 1.02356 1.21687 0.98044 0.97502 0.88772 1.21717 0.98533 1.04391 0.93133 1.21156 0.86948 0.78332 0.82871 1.90675 1.29402 1.36019 1.82674 1.43776 1.22595 1.57389 1.07872 1.17324 0.89568 0.99664 0.85798 1.21479 0.90383 1.00226 1.01821 1.21157 0.99724 0.98857 0.92335 1.21011 0.95319 1.01614 0.96669 1.20926 0.93287 1.01794 0.97717 1.21398 0.97383 1.10025 0.95036 1.85281 1.05418 1.89986 1.07667 1.23658 1.07139 1.05695 0.94279 0.95233 0.93787 0.90652 0.93310 0.94695 0.92742 0.85066 0.90752 0.95189 0.88738 0.87376 0.75033 0.82917 0.85357 0.85720 0.85695 0.87275 0.89658 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.37 37.16 0.35 -2.30 16 2 C -0.16 -3.50 5.20 -26.73 -0.14 -3.63 16 3 C 0.19 4.37 1.92 -68.86 -0.13 4.24 16 4 H 0.04 0.89 6.99 -51.93 -0.36 0.53 16 5 C -0.49 -13.52 8.02 -34.44 -0.28 -13.79 16 6 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 7 C 0.07 1.98 5.39 -17.82 -0.10 1.89 16 8 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 9 Si 0.88 22.10 24.32 -169.99 -4.13 17.97 16 10 H -0.28 -6.85 6.92 56.52 0.39 -6.46 16 11 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.27 -6.58 6.53 56.52 0.37 -6.21 16 13 N -0.67 -13.26 6.25 -107.95 -0.67 -13.93 16 14 C 0.07 1.19 4.80 -3.83 -0.02 1.17 16 15 C -0.14 -1.73 5.91 -27.88 -0.16 -1.89 16 16 C 0.52 6.91 7.64 -10.98 -0.08 6.82 16 17 O -0.51 -8.48 13.13 5.54 0.07 -8.41 16 18 N -0.67 -7.52 5.18 -9.71 -0.05 -7.57 16 19 C 0.18 2.10 6.45 -83.43 -0.54 1.57 16 20 C -0.12 -1.43 8.72 -39.42 -0.34 -1.78 16 21 C -0.10 -0.98 10.04 -39.55 -0.40 -1.38 16 22 C -0.13 -1.06 10.04 -39.57 -0.40 -1.46 16 23 C -0.11 -0.98 9.36 -39.39 -0.37 -1.35 16 24 C -0.12 -1.26 6.12 -38.90 -0.24 -1.49 16 25 S -0.12 -1.03 21.27 -107.50 -2.29 -3.31 16 26 C -0.14 -0.67 9.15 101.05 0.92 0.25 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.78 6.31 -51.93 -0.33 0.45 16 29 H 0.07 1.70 7.22 -51.93 -0.38 1.33 16 30 H 0.05 1.13 3.43 -51.93 -0.18 0.95 16 31 H 0.03 0.69 6.98 -51.93 -0.36 0.33 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.33 6.03 6.53 -39.29 -0.26 5.77 16 34 H 0.07 1.36 8.10 -51.92 -0.42 0.94 16 35 H 0.03 0.54 6.91 -51.93 -0.36 0.18 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.41 3.73 7.64 -40.82 -0.31 3.42 16 39 H 0.15 2.10 5.77 -52.48 -0.30 1.79 16 40 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 41 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.13 0.77 5.88 -52.49 -0.31 0.46 16 43 H 0.11 0.37 8.14 -51.92 -0.42 -0.05 16 44 H 0.08 0.37 7.75 -51.93 -0.40 -0.03 16 45 H 0.08 0.34 7.75 -51.92 -0.40 -0.06 16 LS Contribution 365.08 15.07 5.50 5.50 Total: -1.00 -32.46 365.08 -9.22 -41.68 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.51 Total: 7.82 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -1.92 Total: -13.14 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.05 Total: -48.12 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.07 Total: -8.41 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.13 Total: 17.97 kcal Atomic # 16 Polarization: -1.03 SS G_CDS: -2.29 Total: -3.31 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.46 -9.22 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571414465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.455 kcal (2) G-P(sol) polarization free energy of solvation -32.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds