Wall clock time and date at job start Tue Mar 31 2020 13:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47528 * 2 1 4 4 H 1.08997 * 109.47508 * 185.40457 * 3 2 1 5 5 C 1.50699 * 109.46728 * 305.41016 * 3 2 1 6 6 H 1.08001 * 119.99653 * 120.00080 * 5 3 2 7 7 C 1.37869 * 120.00065 * 299.99330 * 5 3 2 8 8 N 1.31523 * 120.00240 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00190 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47060 * 89.99658 * 9 7 5 11 11 H 1.48497 * 109.47312 * 209.99883 * 9 7 5 12 12 H 1.48502 * 109.47051 * 329.99828 * 9 7 5 13 13 N 1.46901 * 109.46768 * 65.40769 * 3 2 1 14 14 C 1.46898 * 111.00258 * 80.30360 * 13 3 2 15 15 C 1.52994 * 109.47290 * 184.94215 * 14 13 3 16 16 C 1.50706 * 109.47004 * 180.02562 * 15 14 13 17 17 O 1.21298 * 120.00137 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00032 * 179.97438 * 16 15 14 19 19 C 1.40132 * 120.00195 * 185.34791 * 18 16 15 20 20 C 1.38647 * 120.09947 * 24.52683 * 19 18 16 21 21 C 1.38253 * 120.01085 * 179.97438 * 20 19 18 22 22 C 1.38297 * 120.20893 * 359.97438 * 21 20 19 23 23 C 1.38200 * 120.20092 * 0.02562 * 22 21 20 24 24 C 1.38788 * 119.98716 * 359.97438 * 23 22 21 25 25 S 1.76198 * 120.10336 * 180.02562 * 24 23 22 26 26 C 1.81400 * 103.00039 * 359.97438 * 25 24 23 27 27 H 1.09005 * 109.46929 * 184.98643 * 1 2 3 28 28 H 1.08997 * 109.47266 * 304.99033 * 1 2 3 29 29 H 1.09001 * 109.46599 * 64.98791 * 1 2 3 30 30 H 1.09004 * 109.47396 * 239.99509 * 2 1 3 31 31 H 1.09001 * 109.47168 * 120.00188 * 2 1 3 32 32 H 0.96998 * 120.00191 * 180.02562 * 8 7 5 33 33 H 1.00904 * 111.00360 * 316.35241 * 13 3 2 34 34 H 1.09011 * 109.46669 * 64.94168 * 14 13 3 35 35 H 1.08999 * 109.47195 * 304.94759 * 14 13 3 36 36 H 1.08994 * 109.47177 * 60.00602 * 15 14 13 37 37 H 1.09004 * 109.47453 * 299.99659 * 15 14 13 38 38 H 0.97003 * 119.99918 * 5.34592 * 18 16 15 39 39 H 1.08009 * 119.99807 * 0.25819 * 20 19 18 40 40 H 1.08005 * 119.89188 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.90167 * 179.97438 * 22 21 20 42 42 H 1.07997 * 120.00667 * 180.02562 * 23 22 21 43 43 H 1.09002 * 109.46826 * 180.02562 * 26 25 24 44 44 H 1.08997 * 109.47177 * 299.99843 * 26 25 24 45 45 H 1.09005 * 109.46734 * 60.00151 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1257 1.4440 -0.0968 5 6 1.4314 2.1904 -1.1580 6 1 0.8230 3.0642 -0.9765 7 6 1.6512 1.7595 -2.4490 8 7 1.1204 2.4126 -3.4598 9 14 2.7030 0.2480 -2.7629 10 1 1.8417 -0.9616 -2.7700 11 1 3.3808 0.3808 -4.0774 12 1 3.7228 0.1233 -1.6905 13 7 1.6599 2.0962 1.2594 14 6 2.5797 1.7261 2.3433 15 6 2.0827 2.3247 3.6606 16 6 3.0267 1.9455 4.7725 17 8 4.0014 1.2638 4.5345 18 7 2.7885 2.3646 6.0311 19 6 3.7226 2.1079 7.0437 20 6 5.0563 1.9046 6.7242 21 6 5.9764 1.6520 7.7247 22 6 5.5712 1.6016 9.0460 23 6 4.2440 1.8030 9.3744 24 6 3.3134 2.0572 8.3766 25 16 1.6206 2.3151 8.7919 26 6 1.6138 2.1499 10.5983 27 1 -0.3633 -1.0238 0.0893 28 1 -0.3634 0.5893 0.8419 29 1 -0.3632 0.4345 -0.9313 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.2747 2.1091 -4.3680 33 1 0.7055 1.8799 1.5054 34 1 3.5754 2.1107 2.1221 35 1 2.6207 0.6403 2.4302 36 1 1.0872 1.9401 3.8818 37 1 2.0418 3.4106 3.5738 38 1 1.9705 2.8440 6.2361 39 1 5.3774 1.9481 5.6938 40 1 7.0148 1.4935 7.4735 41 1 6.2941 1.4035 9.8236 42 1 3.9312 1.7635 10.4073 43 1 0.5999 2.2923 10.9723 44 1 1.9659 1.1557 10.8735 45 1 2.2714 2.9019 11.0344 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571414465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:02 Heat of formation + Delta-G solvation = -25.326022 kcal Electronic energy + Delta-G solvation = -24228.377501 eV Core-core repulsion = 20757.230470 eV Total energy + Delta-G solvation = -3471.147030 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.69537 -39.60079 -38.60275 -35.95955 -34.98047 -33.58416 -32.30318 -31.43886 -30.04251 -29.67599 -28.37147 -25.08897 -24.82510 -24.07942 -22.98719 -21.38452 -21.29131 -19.29417 -18.50496 -18.15825 -17.94988 -17.09767 -16.99888 -16.48137 -16.24868 -15.85278 -15.47102 -15.20129 -15.00647 -14.93544 -14.77629 -14.64811 -14.54158 -14.31500 -13.96744 -13.82074 -13.37828 -13.21971 -13.04089 -12.74491 -12.62571 -12.43232 -12.40484 -12.25911 -12.06340 -11.73012 -11.67793 -11.26371 -11.22291 -11.12616 -10.89335 -10.69545 -10.67134 -9.37245 -9.06724 -8.31540 -8.24435 -6.23475 0.10941 0.28155 0.49687 1.28413 1.34690 1.42495 1.42575 1.50902 1.90916 2.33061 2.72363 3.10616 3.38565 3.72461 3.82489 4.01607 4.10975 4.19069 4.26762 4.28425 4.28615 4.29589 4.36206 4.41656 4.46723 4.49505 4.61009 4.79455 4.83584 4.88624 4.94676 5.02374 5.09362 5.10230 5.16873 5.23514 5.28122 5.39553 5.53613 5.55586 5.72445 5.93725 6.01388 6.26683 6.65927 6.76608 6.82725 6.97980 7.39955 8.92548 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023691 B = 0.002373 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.613759 B =11794.095256 C =12457.269337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.160 4.160 3 C 0.190 3.810 4 H 0.018 0.982 5 C -0.484 4.484 6 H 0.044 0.956 7 C 0.018 3.982 8 N -0.948 5.948 9 Si 0.936 3.064 10 H -0.266 1.266 11 H -0.300 1.300 12 H -0.259 1.259 13 N -0.677 5.677 14 C 0.076 3.924 15 C -0.126 4.126 16 C 0.519 3.481 17 O -0.552 6.552 18 N -0.659 5.659 19 C 0.149 3.851 20 C -0.142 4.142 21 C -0.109 4.109 22 C -0.120 4.120 23 C -0.114 4.114 24 C -0.128 4.128 25 S -0.149 6.149 26 C -0.132 4.132 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.035 0.965 31 H 0.058 0.942 32 H 0.264 0.736 33 H 0.341 0.659 34 H 0.054 0.946 35 H 0.024 0.976 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.423 0.577 39 H 0.129 0.871 40 H 0.143 0.857 41 H 0.156 0.844 42 H 0.154 0.846 43 H 0.125 0.875 44 H 0.094 0.906 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.072 -1.907 33.576 33.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.199 4.199 3 C 0.080 3.920 4 H 0.036 0.964 5 C -0.523 4.523 6 H 0.062 0.938 7 C -0.179 4.179 8 N -0.589 5.589 9 Si 0.764 3.236 10 H -0.192 1.192 11 H -0.228 1.228 12 H -0.184 1.184 13 N -0.309 5.309 14 C -0.054 4.054 15 C -0.166 4.166 16 C 0.309 3.691 17 O -0.430 6.430 18 N -0.304 5.304 19 C 0.049 3.951 20 C -0.164 4.164 21 C -0.130 4.130 22 C -0.140 4.140 23 C -0.138 4.138 24 C -0.243 4.243 25 S 0.092 5.908 26 C -0.300 4.300 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.161 0.839 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.261 0.739 39 H 0.146 0.854 40 H 0.161 0.839 41 H 0.174 0.826 42 H 0.172 0.828 43 H 0.144 0.856 44 H 0.113 0.887 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.974 -1.520 32.384 32.555 hybrid contribution 0.967 -1.443 -0.029 1.737 sum 3.941 -2.963 32.355 32.728 Atomic orbital electron populations 1.21530 0.94457 1.00534 1.02045 1.22433 0.98401 0.99495 0.99535 1.19430 0.94818 0.89328 0.88471 0.96377 1.21057 1.29915 1.11557 0.89781 0.93811 1.25579 0.96836 0.99460 0.96037 1.70017 1.47185 1.42322 0.99365 0.86052 0.79984 0.80880 0.76645 1.19206 1.22769 1.18422 1.60548 1.06140 1.62170 1.01995 1.21586 0.96672 0.97323 0.89839 1.21584 0.99390 1.05037 0.90557 1.21190 0.86394 0.77930 0.83613 1.90671 1.30943 1.38029 1.83332 1.43573 1.22857 1.56801 1.07174 1.17514 0.89543 1.01367 0.86722 1.21434 0.91475 1.02079 1.01373 1.21397 1.00140 0.98709 0.92730 1.21395 0.96040 0.99905 0.96631 1.21354 0.93112 1.00555 0.98790 1.21601 0.98735 1.09347 0.94576 1.85361 1.04269 1.89807 1.11394 1.23797 1.08618 1.06687 0.90901 0.92462 0.91837 0.93957 0.94626 0.92321 0.92727 0.83864 0.92745 0.95760 0.85946 0.85947 0.73857 0.85377 0.83928 0.82611 0.82832 0.85634 0.88732 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 9.37 71.98 0.67 -4.20 16 2 C -0.16 -6.66 5.20 30.59 0.16 -6.50 16 3 C 0.19 8.86 1.92 44.17 0.08 8.95 16 4 H 0.02 0.92 6.99 -2.39 -0.02 0.90 16 5 C -0.48 -27.30 8.02 25.60 0.21 -27.09 16 6 H 0.04 2.74 8.06 -2.91 -0.02 2.72 16 7 C 0.02 1.04 5.39 84.65 0.46 1.49 16 8 N -0.95 -59.28 13.96 21.45 0.30 -58.98 16 9 Si 0.94 46.00 24.32 68.60 1.67 47.67 16 10 H -0.27 -12.41 6.92 99.48 0.69 -11.73 16 11 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 12 H -0.26 -12.25 6.53 99.48 0.65 -11.60 16 13 N -0.68 -26.29 6.25 -495.46 -3.10 -29.39 16 14 C 0.08 2.53 4.80 86.30 0.41 2.94 16 15 C -0.13 -3.00 5.91 29.85 0.18 -2.82 16 16 C 0.52 13.76 7.64 87.66 0.67 14.43 16 17 O -0.55 -18.77 13.13 -3.09 -0.04 -18.81 16 18 N -0.66 -14.47 5.18 -303.00 -1.57 -16.04 16 19 C 0.15 3.49 6.45 38.22 0.25 3.74 16 20 C -0.14 -3.54 8.72 22.37 0.19 -3.35 16 21 C -0.11 -2.06 10.04 22.29 0.22 -1.83 16 22 C -0.12 -1.72 10.04 22.27 0.22 -1.50 16 23 C -0.11 -1.66 9.36 22.39 0.21 -1.45 16 24 C -0.13 -2.39 6.12 22.71 0.14 -2.25 16 25 S -0.15 -2.16 21.27 -56.49 -1.20 -3.36 16 26 C -0.13 -0.81 9.15 113.37 1.04 0.23 16 27 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.06 2.12 6.31 -2.39 -0.02 2.11 16 29 H 0.04 1.88 7.22 -2.39 -0.02 1.86 16 30 H 0.04 1.58 3.43 -2.38 -0.01 1.57 16 31 H 0.06 2.18 6.98 -2.39 -0.02 2.16 16 32 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 33 H 0.34 11.94 6.53 -89.69 -0.59 11.35 16 34 H 0.05 2.03 8.10 -2.38 -0.02 2.01 16 35 H 0.02 0.84 6.91 -2.39 -0.02 0.83 16 36 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.12 2.60 8.14 -2.38 -0.02 2.58 16 38 H 0.42 7.22 7.64 -92.71 -0.71 6.51 16 39 H 0.13 3.78 5.77 -2.91 -0.02 3.77 16 40 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 42 H 0.15 1.27 5.88 -2.91 -0.02 1.25 16 43 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.09 0.45 7.75 -2.39 -0.02 0.44 16 45 H 0.10 0.40 7.75 -2.39 -0.02 0.38 16 Total: -1.00 -73.36 365.08 0.83 -72.53 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -0.35 Total: 25.61 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 5.11 Total: -19.23 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -4.37 Total: -104.40 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.04 Total: -18.81 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.67 Total: 47.67 kcal Atomic # 16 Polarization: -2.16 SS G_CDS: -1.20 Total: -3.36 kcal Total: -73.36 0.83 -72.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571414465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.204 kcal (2) G-P(sol) polarization free energy of solvation -73.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds