Wall clock time and date at job start Tue Mar 31 2020 13:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47303 * 2 1 4 4 H 1.09013 * 109.46805 * 55.12382 * 3 2 1 5 5 C 1.50692 * 109.47683 * 175.12431 * 3 2 1 6 6 H 1.07999 * 120.00110 * 120.00209 * 5 3 2 7 7 C 1.37887 * 119.99895 * 300.00662 * 5 3 2 8 8 N 1.31507 * 119.99886 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99759 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46897 * 60.00192 * 9 7 5 11 11 H 1.48497 * 109.47038 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47613 * 299.99747 * 9 7 5 13 13 N 1.46899 * 109.47486 * 295.13310 * 3 2 1 14 14 C 1.46898 * 111.00379 * 158.40621 * 13 3 2 15 15 H 1.09000 * 109.47401 * 37.37811 * 14 13 3 16 16 C 1.53001 * 109.46505 * 277.37832 * 14 13 3 17 17 C 1.50700 * 109.47028 * 157.38413 * 14 13 3 18 18 O 1.21287 * 120.00402 * 359.97438 * 17 14 13 19 19 N 1.34775 * 119.99673 * 179.97438 * 17 14 13 20 20 C 1.39932 * 120.00032 * 184.95150 * 19 17 14 21 21 C 1.38963 * 120.03349 * 213.26528 * 20 19 17 22 22 C 1.38149 * 120.08906 * 179.97438 * 21 20 19 23 23 C 1.38146 * 120.15487 * 359.78729 * 22 21 20 24 24 C 1.39007 * 120.05770 * 0.46548 * 23 22 21 25 25 S 1.76199 * 120.04712 * 179.78854 * 24 23 22 26 26 C 1.81402 * 103.00012 * 359.72603 * 25 24 23 27 27 C 1.38695 * 120.02704 * 33.23902 * 20 19 17 28 28 H 1.08997 * 109.47058 * 305.91258 * 1 2 3 29 29 H 1.09002 * 109.47093 * 65.90656 * 1 2 3 30 30 H 1.09001 * 109.46780 * 185.90889 * 1 2 3 31 31 H 1.09000 * 109.47126 * 240.00791 * 2 1 3 32 32 H 1.08999 * 109.47079 * 120.00027 * 2 1 3 33 33 H 0.97000 * 120.00148 * 180.02562 * 8 7 5 34 34 H 1.00903 * 110.99924 * 34.44259 * 13 3 2 35 35 H 1.08997 * 109.47362 * 295.09831 * 16 14 13 36 36 H 1.08994 * 109.47211 * 55.10501 * 16 14 13 37 37 H 1.09008 * 109.46968 * 175.10422 * 16 14 13 38 38 H 0.97003 * 120.00593 * 4.94959 * 19 17 14 39 39 H 1.08007 * 119.95186 * 359.97438 * 21 20 19 40 40 H 1.08010 * 119.92501 * 180.02562 * 22 21 20 41 41 H 1.08004 * 119.97425 * 180.23027 * 23 22 21 42 42 H 1.09000 * 109.46998 * 180.02562 * 26 25 24 43 43 H 1.09004 * 109.46867 * 300.00030 * 26 25 24 44 44 H 1.08997 * 109.47004 * 59.99644 * 26 25 24 45 45 H 1.08006 * 120.07787 * 0.04930 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6071 1.9810 0.8432 5 6 3.5421 1.4443 0.1208 6 1 4.1458 1.8895 -0.6563 7 6 4.1458 0.8775 1.2233 8 7 3.4107 0.3358 2.1696 9 14 6.0078 0.8791 1.3726 10 1 6.5032 2.2791 1.3724 11 1 6.4033 0.2149 2.6404 12 1 6.5973 0.1453 0.2240 13 7 1.6487 2.1003 -1.2538 14 6 1.6487 3.5617 -1.1040 15 1 2.4796 3.8615 -0.4654 16 6 0.3304 4.0091 -0.4693 17 6 1.7981 4.2055 -2.4583 18 8 1.8956 3.5150 -3.4507 19 7 1.8235 5.5486 -2.5668 20 6 1.8577 6.1479 -3.8308 21 6 2.5421 7.3432 -4.0155 22 6 2.5771 7.9356 -5.2631 23 6 1.9361 7.3403 -6.3322 24 6 1.2452 6.1473 -6.1534 25 16 0.4231 5.3912 -7.5161 26 6 0.7633 6.5340 -8.8832 27 6 1.2091 5.5492 -4.9006 28 1 -0.3633 0.6028 0.8323 29 1 -0.3633 0.4195 -0.9382 30 1 -0.3633 -1.0222 0.1058 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 3.8353 -0.0626 2.9454 34 1 0.7498 1.7692 -1.5706 35 1 -0.4933 3.7872 -1.1478 36 1 0.1806 3.4773 0.4702 37 1 0.3648 5.0817 -0.2782 38 1 1.8179 6.0999 -1.7687 39 1 3.0472 7.8096 -3.1826 40 1 3.1101 8.8644 -5.4037 41 1 1.9684 7.8041 -7.3071 42 1 0.2944 6.1610 -9.7938 43 1 0.3594 7.5176 -8.6435 44 1 1.8402 6.6102 -9.0335 45 1 0.6763 4.6204 -4.7595 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572972017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:30 Heat of formation + Delta-G solvation = -9.720268 kcal Electronic energy + Delta-G solvation = -24782.338051 eV Core-core repulsion = 21311.867737 eV Total energy + Delta-G solvation = -3470.470314 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.39958 -38.49230 -36.45133 -34.62243 -33.23257 -31.57895 -31.10523 -30.26787 -28.98368 -28.28377 -26.16203 -24.33972 -23.18387 -22.83957 -21.87125 -19.81142 -19.62810 -18.35678 -16.70625 -16.47162 -16.20323 -16.06773 -15.44961 -14.81384 -14.64624 -14.48130 -14.24205 -14.09026 -13.89260 -13.54827 -13.44588 -13.00683 -12.82852 -12.76949 -12.59240 -12.17898 -11.92912 -11.87525 -11.70880 -11.67298 -11.18458 -10.95273 -10.85321 -10.65875 -10.56956 -10.30905 -9.98269 -9.92808 -9.68153 -9.64168 -9.24459 -9.08333 -8.37318 -8.18876 -7.52301 -7.26341 -5.99181 -4.03543 1.07408 1.27670 1.35626 2.25678 2.92842 3.15757 3.33288 3.37670 3.42392 3.68190 4.43533 4.72505 4.77150 4.78278 4.91850 4.98294 5.06839 5.15702 5.29794 5.34451 5.42102 5.43498 5.45008 5.59885 5.74631 5.93220 6.12132 6.14967 6.17868 6.18749 6.24918 6.27264 6.35301 6.38570 6.43378 6.85056 6.94940 7.06453 7.14473 7.40658 7.55622 7.76480 7.89457 8.20979 8.34834 8.47388 8.71525 9.04589 9.61794 11.05923 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.002909 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.958732 B = 9624.027079 C =10251.378150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.222 3.778 4 H 0.005 0.995 5 C -0.498 4.498 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.663 5.663 14 C 0.078 3.922 15 H 0.113 0.887 16 C -0.177 4.177 17 C 0.517 3.483 18 O -0.495 6.495 19 N -0.683 5.683 20 C 0.180 3.820 21 C -0.157 4.157 22 C -0.081 4.081 23 C -0.159 4.159 24 C -0.065 4.065 25 S -0.112 6.112 26 C -0.146 4.146 27 C -0.104 4.104 28 H 0.042 0.958 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.100 0.900 33 H 0.260 0.740 34 H 0.325 0.675 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.410 0.590 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.902 16.232 -13.218 22.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.115 3.885 4 H 0.022 0.978 5 C -0.537 4.537 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.295 5.295 14 C -0.036 4.036 15 H 0.131 0.869 16 C -0.237 4.237 17 C 0.305 3.695 18 O -0.365 6.365 19 N -0.330 5.330 20 C 0.083 3.917 21 C -0.180 4.180 22 C -0.101 4.101 23 C -0.184 4.184 24 C -0.179 4.179 25 S 0.130 5.870 26 C -0.315 4.315 27 C -0.130 4.130 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.144 0.856 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.246 0.754 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.139 0.861 42 H 0.125 0.875 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.866 14.451 -14.143 21.354 hybrid contribution 1.061 1.581 1.167 2.233 sum -5.805 16.032 -12.976 21.426 Atomic orbital electron populations 1.21887 0.99571 0.99829 0.99507 1.21739 0.91251 1.00054 1.03237 1.19203 0.95393 0.90120 0.83803 0.97758 1.21186 0.91177 1.36824 1.04473 0.92135 1.24935 0.98120 0.95493 0.95765 1.69854 1.34871 1.39102 1.09664 0.86616 0.85788 0.78153 0.77170 1.20455 1.21442 1.20239 1.60345 1.33993 1.00119 1.35003 1.21347 0.98862 0.92253 0.91173 0.86880 1.22485 0.97612 1.01440 1.02127 1.21446 0.74641 0.80547 0.92875 1.90686 1.45013 1.61933 1.38906 1.43846 1.74721 1.07885 1.06570 1.17641 0.95080 0.93039 0.85926 1.20943 1.01568 0.97061 0.98390 1.20768 0.98217 0.99285 0.91871 1.21041 1.01831 0.95926 0.99585 1.21537 1.01611 0.97743 0.96966 1.85692 1.66464 1.33626 1.01168 1.23672 1.05769 1.02301 0.99769 1.20738 1.00659 1.01211 0.90409 0.93928 0.94512 0.94322 0.93823 0.88177 0.92978 0.85584 0.92671 0.90816 0.92505 0.75409 0.85430 0.85527 0.86070 0.87515 0.89858 0.89769 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.61 37.16 0.36 -2.51 16 2 C -0.12 -2.90 5.39 -26.73 -0.14 -3.05 16 3 C 0.22 5.32 1.87 -68.87 -0.13 5.19 16 4 H 0.00 0.12 6.92 -51.92 -0.36 -0.24 16 5 C -0.50 -13.50 8.30 -34.44 -0.29 -13.79 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.57 5.29 -17.82 -0.09 1.47 16 8 N -0.90 -24.87 11.29 55.43 0.63 -24.24 16 9 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 N -0.66 -14.10 5.52 -102.17 -0.56 -14.66 16 14 C 0.08 1.39 2.82 -68.87 -0.19 1.19 16 15 H 0.11 2.13 7.52 -51.93 -0.39 1.74 16 16 C -0.18 -2.51 9.04 37.16 0.34 -2.17 16 17 C 0.52 8.97 6.97 -10.99 -0.08 8.90 16 18 O -0.49 -10.44 14.10 5.55 0.08 -10.37 16 19 N -0.68 -9.19 5.23 -9.88 -0.05 -9.24 16 20 C 0.18 2.48 6.28 -83.72 -0.53 1.95 16 21 C -0.16 -1.75 9.96 -39.35 -0.39 -2.14 16 22 C -0.08 -0.81 10.03 -39.65 -0.40 -1.21 16 23 C -0.16 -1.72 9.36 -39.33 -0.37 -2.09 16 24 C -0.07 -0.85 6.11 -39.06 -0.24 -1.09 16 25 S -0.11 -1.30 22.56 -107.50 -2.43 -3.73 16 26 C -0.15 -1.04 9.15 101.05 0.92 -0.12 16 27 C -0.10 -1.57 8.40 -39.18 -0.33 -1.90 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.04 0.64 6.64 -51.93 -0.34 0.30 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.10 2.61 5.96 -51.93 -0.31 2.30 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.33 6.54 6.37 -39.29 -0.25 6.29 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 1.13 7.15 -51.93 -0.37 0.76 16 37 H 0.06 0.63 7.83 -51.92 -0.41 0.22 16 38 H 0.41 4.14 8.49 -40.82 -0.35 3.79 16 39 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 40 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 41 H 0.12 1.01 5.87 -52.48 -0.31 0.70 16 42 H 0.11 0.59 8.14 -51.92 -0.42 0.17 16 43 H 0.08 0.50 7.76 -51.92 -0.40 0.10 16 44 H 0.08 0.55 7.73 -51.93 -0.40 0.15 16 45 H 0.14 2.42 6.40 -52.48 -0.34 2.08 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -31.43 375.73 -9.98 -41.42 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -6.73 Total: 10.18 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -1.56 Total: -11.37 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.01 Total: -48.14 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.30 SS G_CDS: -2.43 Total: -3.73 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.43 -9.98 -41.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572972017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.696 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds