Wall clock time and date at job start Tue Mar 31 2020 13:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47117 * 2 1 4 4 H 1.09004 * 109.47399 * 306.44839 * 3 2 1 5 5 C 1.50702 * 109.47373 * 186.45223 * 3 2 1 6 6 H 1.07995 * 120.00595 * 244.87917 * 5 3 2 7 7 C 1.37879 * 119.99811 * 64.87519 * 5 3 2 8 8 N 1.31516 * 120.00054 * 193.25496 * 7 5 3 9 9 Si 1.86796 * 119.99999 * 13.25677 * 7 5 3 10 10 H 1.48501 * 109.46929 * 94.98928 * 9 7 5 11 11 H 1.48504 * 109.47065 * 214.98283 * 9 7 5 12 12 H 1.48495 * 109.47384 * 334.98420 * 9 7 5 13 13 N 1.46900 * 109.47339 * 66.45127 * 3 2 1 14 14 C 1.46896 * 111.00132 * 207.53251 * 13 3 2 15 15 H 1.08997 * 109.47127 * 327.58077 * 14 13 3 16 16 C 1.53005 * 109.46881 * 87.58345 * 14 13 3 17 17 C 1.50693 * 109.47188 * 207.57684 * 14 13 3 18 18 O 1.21291 * 120.00374 * 0.02562 * 17 14 13 19 19 N 1.34777 * 120.00290 * 180.02562 * 17 14 13 20 20 C 1.39922 * 120.00446 * 185.01051 * 19 17 14 21 21 C 1.38965 * 120.03317 * 213.32559 * 20 19 17 22 22 C 1.38158 * 120.09062 * 180.02562 * 21 20 19 23 23 C 1.38153 * 120.14970 * 359.70251 * 22 21 20 24 24 C 1.39002 * 120.05834 * 0.55227 * 23 22 21 25 25 S 1.76205 * 120.04621 * 179.74393 * 24 23 22 26 26 C 1.81398 * 102.99896 * 359.72688 * 25 24 23 27 27 C 1.38696 * 120.02807 * 33.30870 * 20 19 17 28 28 H 1.09000 * 109.46902 * 304.23577 * 1 2 3 29 29 H 1.08996 * 109.46799 * 64.23725 * 1 2 3 30 30 H 1.09003 * 109.46834 * 184.23465 * 1 2 3 31 31 H 1.09008 * 109.47222 * 239.99834 * 2 1 3 32 32 H 1.09005 * 109.47115 * 120.00194 * 2 1 3 33 33 H 0.96998 * 120.00318 * 180.02562 * 8 7 5 34 34 H 1.00903 * 110.99645 * 331.49380 * 13 3 2 35 35 H 1.09001 * 109.47332 * 175.23576 * 16 14 13 36 36 H 1.09007 * 109.46583 * 295.23379 * 16 14 13 37 37 H 1.08999 * 109.47333 * 55.22937 * 16 14 13 38 38 H 0.97004 * 119.99977 * 5.01284 * 19 17 14 39 39 H 1.07999 * 119.95597 * 359.97438 * 21 20 19 40 40 H 1.07994 * 119.92638 * 180.02562 * 22 21 20 41 41 H 1.08002 * 119.97330 * 180.28064 * 23 22 21 42 42 H 1.08998 * 109.47202 * 300.00384 * 26 25 24 43 43 H 1.09002 * 109.47114 * 59.99731 * 26 25 24 44 44 H 1.08999 * 109.47246 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.07532 * 359.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5855 1.9886 -0.8267 5 6 3.5385 1.4455 -0.1597 6 1 4.1660 1.8117 0.6394 7 6 4.1085 0.9808 -1.3260 8 7 5.3999 0.7370 -1.3751 9 14 3.0464 0.6974 -2.8362 10 1 3.0953 1.8985 -3.7082 11 1 3.5554 -0.4793 -3.5856 12 1 1.6443 0.4477 -2.4156 13 7 1.6815 2.0886 1.2696 14 6 1.5400 3.5409 1.0997 15 1 2.2340 3.8863 0.3335 16 6 0.1069 3.8673 0.6747 17 6 1.8469 4.2314 2.4035 18 8 2.1538 3.5781 3.3783 19 7 1.7803 5.5750 2.4865 20 6 2.1660 6.2231 3.6651 21 6 1.5213 7.3889 4.0606 22 6 1.9014 8.0302 5.2238 23 6 2.9192 7.5120 6.0010 24 6 3.5719 6.3491 5.6085 25 16 4.8746 5.6922 6.5966 26 6 4.9789 6.8715 7.9709 27 6 3.1918 5.7025 4.4398 28 1 -0.3633 0.5782 0.8496 29 1 -0.3633 0.4467 -0.9255 30 1 -0.3633 -1.0249 0.0759 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.8010 0.4104 -2.1957 34 1 0.8406 1.6859 1.6555 35 1 -0.0216 4.9489 0.6307 36 1 -0.0872 3.4380 -0.3083 37 1 -0.5914 3.4476 1.3988 38 1 1.4651 6.0927 1.7292 39 1 0.7225 7.7947 3.4575 40 1 1.3983 8.9358 5.5289 41 1 3.2111 8.0131 6.9121 42 1 5.2077 7.8636 7.5818 43 1 4.0257 6.8994 8.4989 44 1 5.7655 6.5601 8.6581 45 1 3.6939 4.7962 4.1348 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572972018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:37 Heat of formation + Delta-G solvation = -1.538362 kcal Electronic energy + Delta-G solvation = -24865.982693 eV Core-core repulsion = 21395.867173 eV Total energy + Delta-G solvation = -3470.115520 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.40065 -38.51177 -36.70051 -34.62389 -33.30361 -31.91042 -31.06990 -30.27973 -29.09709 -28.40888 -26.64838 -24.38592 -23.11829 -22.66829 -21.92437 -19.87652 -19.82773 -18.38128 -16.87578 -16.61832 -16.42956 -16.05906 -15.24758 -15.02413 -14.91165 -14.37164 -14.18332 -14.08211 -13.97536 -13.59749 -13.44828 -13.21703 -12.94695 -12.74094 -12.70997 -12.30542 -12.11468 -12.08059 -11.81136 -11.66770 -11.64214 -11.15558 -10.89938 -10.61077 -10.52931 -10.28781 -10.24687 -10.08466 -9.65505 -9.58889 -9.26782 -9.20438 -8.49204 -8.16619 -7.45756 -7.39648 -6.05001 -3.99285 1.10214 1.31328 1.42680 2.33496 2.92204 3.13929 3.24850 3.34960 3.36568 3.70080 4.41562 4.73853 4.83534 4.84199 4.86954 4.96983 4.98775 5.06975 5.19717 5.29084 5.39444 5.43514 5.45464 5.49612 5.71672 5.78050 5.81510 5.85946 5.97063 6.06548 6.16548 6.18877 6.27695 6.31825 6.39967 6.49441 6.60525 6.70027 6.88611 6.98035 7.18855 7.49416 7.75679 7.90017 8.19482 8.46157 8.74415 9.13445 9.59853 11.08337 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.003067 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.474540 B = 9125.885769 C = 9885.159683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.130 4.130 3 C 0.197 3.803 4 H -0.001 1.001 5 C -0.503 4.503 6 H 0.080 0.920 7 C 0.071 3.929 8 N -0.893 5.893 9 Si 0.858 3.142 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.252 1.252 13 N -0.652 5.652 14 C 0.077 3.923 15 H 0.115 0.885 16 C -0.178 4.178 17 C 0.518 3.482 18 O -0.490 6.490 19 N -0.684 5.684 20 C 0.179 3.821 21 C -0.158 4.158 22 C -0.083 4.083 23 C -0.159 4.159 24 C -0.065 4.065 25 S -0.105 6.105 26 C -0.148 4.148 27 C -0.102 4.102 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.262 0.738 34 H 0.328 0.672 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.409 0.591 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.600 15.640 11.471 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.169 4.169 3 C 0.089 3.911 4 H 0.017 0.983 5 C -0.542 4.542 6 H 0.098 0.902 7 C -0.130 4.130 8 N -0.531 5.531 9 Si 0.685 3.315 10 H -0.210 1.210 11 H -0.213 1.213 12 H -0.177 1.177 13 N -0.283 5.283 14 C -0.038 4.038 15 H 0.133 0.867 16 C -0.238 4.238 17 C 0.305 3.695 18 O -0.361 6.361 19 N -0.331 5.331 20 C 0.082 3.918 21 C -0.181 4.181 22 C -0.103 4.103 23 C -0.184 4.184 24 C -0.178 4.178 25 S 0.137 5.863 26 C -0.317 4.317 27 C -0.128 4.128 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.147 0.853 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.245 0.755 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.125 0.875 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.790 14.012 12.171 20.128 hybrid contribution -2.201 1.294 -1.667 3.049 sum -9.991 15.306 10.505 21.081 Atomic orbital electron populations 1.21932 0.98564 1.00479 1.00390 1.22139 0.92479 0.99987 1.02268 1.19576 0.96847 0.89654 0.85041 0.98312 1.21034 0.89216 1.41834 1.02084 0.90170 1.24933 0.94707 0.94877 0.98528 1.69966 1.11056 1.44767 1.27290 0.87294 0.82331 0.77905 0.83939 1.20954 1.21348 1.17657 1.60119 1.39371 0.99062 1.29749 1.21393 0.96768 0.92217 0.93406 0.86694 1.22533 0.96907 1.01706 1.02648 1.21293 0.76168 0.80629 0.91398 1.90699 1.43425 1.64330 1.37630 1.43810 1.66786 1.07776 1.14682 1.17620 0.93152 0.92882 0.88166 1.20888 1.01352 0.97283 0.98608 1.20746 0.96434 0.99175 0.93928 1.21046 0.99389 0.96621 1.01317 1.21578 0.99769 0.97953 0.98510 1.85865 1.41500 1.35824 1.23101 1.23680 1.06206 1.02065 0.99744 1.20838 0.96467 1.01337 0.94176 0.93502 0.93741 0.93648 0.91939 0.91645 0.92788 0.85274 0.92325 0.91207 0.92212 0.75513 0.85612 0.85603 0.86072 0.89867 0.89873 0.87501 0.83707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.82 37.16 0.36 -2.24 16 2 C -0.13 -2.73 4.70 -26.73 -0.13 -2.86 16 3 C 0.20 4.42 1.36 -68.87 -0.09 4.33 16 4 H 0.00 -0.01 6.02 -51.93 -0.31 -0.33 16 5 C -0.50 -13.98 9.09 -34.44 -0.31 -14.29 16 6 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 7 C 0.07 2.02 5.35 -17.82 -0.10 1.92 16 8 N -0.89 -27.20 13.96 55.43 0.77 -26.43 16 9 Si 0.86 20.49 25.72 -169.99 -4.37 16.12 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.25 -5.55 5.40 56.52 0.31 -5.25 16 13 N -0.65 -13.22 5.55 -102.17 -0.57 -13.79 16 14 C 0.08 1.30 2.80 -68.87 -0.19 1.10 16 15 H 0.12 2.07 7.70 -51.93 -0.40 1.68 16 16 C -0.18 -2.25 9.12 37.16 0.34 -1.91 16 17 C 0.52 8.88 6.97 -10.99 -0.08 8.80 16 18 O -0.49 -10.36 14.10 5.55 0.08 -10.28 16 19 N -0.68 -9.11 5.25 -9.88 -0.05 -9.16 16 20 C 0.18 2.49 6.28 -83.73 -0.53 1.96 16 21 C -0.16 -1.72 9.96 -39.34 -0.39 -2.11 16 22 C -0.08 -0.82 10.03 -39.64 -0.40 -1.22 16 23 C -0.16 -1.76 9.36 -39.33 -0.37 -2.13 16 24 C -0.06 -0.89 6.11 -39.06 -0.24 -1.13 16 25 S -0.11 -1.35 22.56 -107.50 -2.43 -3.77 16 26 C -0.15 -1.16 9.15 101.05 0.92 -0.24 16 27 C -0.10 -1.64 8.40 -39.18 -0.33 -1.97 16 28 H 0.05 0.71 6.41 -51.93 -0.33 0.37 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.39 4.86 -51.92 -0.25 1.13 16 32 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.33 6.08 6.15 -39.29 -0.24 5.84 16 35 H 0.06 0.56 7.33 -51.93 -0.38 0.18 16 36 H 0.07 0.90 7.71 -51.92 -0.40 0.50 16 37 H 0.06 0.73 8.04 -51.93 -0.42 0.31 16 38 H 0.41 3.99 8.03 -40.82 -0.33 3.66 16 39 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.12 1.04 5.87 -52.49 -0.31 0.73 16 42 H 0.08 0.56 7.76 -51.93 -0.40 0.16 16 43 H 0.08 0.58 7.73 -51.92 -0.40 0.18 16 44 H 0.11 0.67 8.14 -51.92 -0.42 0.25 16 45 H 0.15 2.77 6.40 -52.49 -0.34 2.43 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -33.66 370.30 -9.21 -42.87 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -6.70 Total: 10.85 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -1.52 Total: -11.98 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.15 Total: -49.38 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.37 Total: 16.12 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -2.43 Total: -3.77 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.66 -9.21 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572972018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.331 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds