Wall clock time and date at job start Tue Mar 31 2020 13:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47002 * 2 1 4 4 H 1.08997 * 109.46919 * 304.62848 * 3 2 1 5 5 C 1.50700 * 109.46650 * 184.62864 * 3 2 1 6 6 H 1.08002 * 119.99827 * 239.99457 * 5 3 2 7 7 C 1.37879 * 120.00162 * 60.00260 * 5 3 2 8 8 N 1.31517 * 119.99744 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99984 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47021 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46903 * 119.99864 * 9 7 5 12 12 H 1.48500 * 109.47029 * 239.99748 * 9 7 5 13 13 N 1.46898 * 109.47275 * 64.63037 * 3 2 1 14 14 C 1.46895 * 111.00032 * 210.05439 * 13 3 2 15 15 H 1.09001 * 109.47010 * 32.78635 * 14 13 3 16 16 C 1.52998 * 109.47346 * 272.78543 * 14 13 3 17 17 C 1.50705 * 109.47257 * 152.78150 * 14 13 3 18 18 O 1.21283 * 119.99808 * 0.02562 * 17 14 13 19 19 N 1.34774 * 119.99936 * 179.97438 * 17 14 13 20 20 C 1.39928 * 120.00010 * 185.12322 * 19 17 14 21 21 C 1.38963 * 120.02711 * 212.93321 * 20 19 17 22 22 C 1.38156 * 120.08525 * 179.97438 * 21 20 19 23 23 C 1.38153 * 120.15252 * 359.69769 * 22 21 20 24 24 C 1.39004 * 120.05723 * 0.55571 * 23 22 21 25 25 S 1.76196 * 120.04518 * 179.74328 * 24 23 22 26 26 C 1.81402 * 103.00203 * 359.72383 * 25 24 23 27 27 C 1.38694 * 120.02911 * 32.90739 * 20 19 17 28 28 H 1.09001 * 109.47192 * 184.64956 * 1 2 3 29 29 H 1.08994 * 109.47665 * 304.65691 * 1 2 3 30 30 H 1.09004 * 109.46876 * 64.65438 * 1 2 3 31 31 H 1.08992 * 109.47320 * 239.99725 * 2 1 3 32 32 H 1.09001 * 109.46606 * 119.99815 * 2 1 3 33 33 H 0.96998 * 119.99346 * 180.02562 * 8 7 5 34 34 H 1.00900 * 111.00218 * 86.09560 * 13 3 2 35 35 H 1.08994 * 109.47627 * 180.02562 * 16 14 13 36 36 H 1.09001 * 109.47141 * 300.00012 * 16 14 13 37 37 H 1.09002 * 109.47040 * 59.99690 * 16 14 13 38 38 H 0.97007 * 120.00149 * 5.13107 * 19 17 14 39 39 H 1.08002 * 119.96177 * 359.97438 * 21 20 19 40 40 H 1.08004 * 119.92435 * 180.02562 * 22 21 20 41 41 H 1.08003 * 119.97082 * 180.27571 * 23 22 21 42 42 H 1.08998 * 109.46995 * 300.00286 * 26 25 24 43 43 H 1.08996 * 109.46655 * 59.99900 * 26 25 24 44 44 H 1.08997 * 109.47330 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.07609 * 0.04792 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6105 1.9797 -0.8456 5 6 3.5426 1.4440 -0.1147 6 1 4.1432 1.8903 0.6642 7 6 4.1507 0.8757 -1.2139 8 7 3.4194 0.3319 -2.1621 9 14 6.0133 0.8782 -1.3563 10 1 6.5997 1.5468 -0.1671 11 1 6.5058 -0.5207 -1.4315 12 1 6.4149 1.6110 -2.5839 13 7 1.6437 2.1020 1.2514 14 6 1.4495 3.5438 1.0480 15 1 1.0718 3.7210 0.0410 16 6 2.7850 4.2686 1.2267 17 6 0.4568 4.0640 2.0556 18 8 -0.0395 3.3082 2.8638 19 7 0.1215 5.3694 2.0592 20 6 -0.7164 5.8738 3.0599 21 6 -1.5962 6.9104 2.7731 22 6 -2.4244 7.4090 3.7601 23 6 -2.3856 6.8751 5.0337 24 6 -1.5041 5.8416 5.3288 25 16 -1.4500 5.1654 6.9550 26 6 -2.6950 6.1403 7.8439 27 6 -0.6698 5.3392 4.3388 28 1 -0.3633 -1.0243 0.0833 29 1 -0.3634 0.5843 0.8452 30 1 -0.3633 0.4399 -0.9288 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.8472 -0.0682 -2.9352 34 1 2.3180 1.9274 1.9814 35 1 2.6409 5.3384 1.0763 36 1 3.1627 4.0913 2.2337 37 1 3.5030 3.8923 0.4979 38 1 0.4609 5.9593 1.3679 39 1 -1.6328 7.3269 1.7773 40 1 -3.1076 8.2144 3.5342 41 1 -3.0375 7.2641 5.8019 42 1 -2.4172 7.1940 7.8188 43 1 -3.6667 6.0094 7.3678 44 1 -2.7495 5.8031 8.8790 45 1 0.0135 4.5337 4.5642 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572972020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:54 Heat of formation + Delta-G solvation = -11.879691 kcal Electronic energy + Delta-G solvation = -24777.511392 eV Core-core repulsion = 21306.947438 eV Total energy + Delta-G solvation = -3470.563954 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.41136 -38.49012 -36.33757 -34.63838 -33.20252 -31.50749 -31.11996 -30.29760 -28.99808 -28.18651 -26.19387 -24.11041 -23.17543 -22.74533 -21.90070 -19.85989 -19.57879 -18.37239 -16.91100 -16.48184 -16.34353 -16.07797 -15.42096 -14.82629 -14.56086 -14.46100 -14.20080 -14.08856 -13.79421 -13.49941 -13.31297 -12.96299 -12.81325 -12.73307 -12.49835 -11.98802 -11.90210 -11.83517 -11.69198 -11.39710 -11.14321 -10.95357 -10.86606 -10.68490 -10.58250 -10.32000 -10.16973 -9.78297 -9.68772 -9.53542 -9.27423 -8.99106 -8.42085 -8.20078 -7.53370 -7.32625 -6.04912 -4.17683 1.05719 1.26164 1.34742 2.24945 2.90674 3.14718 3.22383 3.31910 3.34055 3.66393 4.34751 4.71023 4.76557 4.77314 4.90768 5.00354 5.04610 5.16935 5.29852 5.33784 5.40672 5.42669 5.54465 5.66958 5.73501 6.04709 6.11655 6.22717 6.23397 6.27593 6.36870 6.43834 6.58447 6.69622 6.77147 6.93505 7.07795 7.25202 7.39474 7.49389 7.59231 7.75063 8.05044 8.06728 8.26550 8.43786 8.59185 8.94616 9.49851 10.95401 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020624 B = 0.002669 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.293811 B =10489.219469 C =10642.499030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C 0.218 3.782 4 H 0.032 0.968 5 C -0.545 4.545 6 H 0.058 0.942 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.666 5.666 14 C 0.082 3.918 15 H 0.099 0.901 16 C -0.176 4.176 17 C 0.514 3.486 18 O -0.495 6.495 19 N -0.683 5.683 20 C 0.180 3.820 21 C -0.158 4.158 22 C -0.081 4.081 23 C -0.160 4.160 24 C -0.065 4.065 25 S -0.111 6.111 26 C -0.147 4.147 27 C -0.104 4.104 28 H 0.024 0.976 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.090 0.910 32 H 0.032 0.968 33 H 0.261 0.739 34 H 0.338 0.662 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.410 0.590 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.296 15.835 12.060 22.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 C 0.111 3.889 4 H 0.049 0.951 5 C -0.584 4.584 6 H 0.076 0.924 7 C -0.135 4.135 8 N -0.521 5.521 9 Si 0.716 3.284 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.295 5.295 14 C -0.033 4.033 15 H 0.116 0.884 16 C -0.235 4.235 17 C 0.302 3.698 18 O -0.366 6.366 19 N -0.330 5.330 20 C 0.083 3.917 21 C -0.181 4.181 22 C -0.101 4.101 23 C -0.184 4.184 24 C -0.178 4.178 25 S 0.131 5.869 26 C -0.315 4.315 27 C -0.130 4.130 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.108 0.892 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.156 0.844 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.246 0.754 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.139 0.861 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.125 0.875 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.606 14.023 12.935 21.828 hybrid contribution 1.309 1.613 -1.217 2.408 sum -9.297 15.636 11.719 21.639 Atomic orbital electron populations 1.21729 0.98995 0.98668 1.00390 1.21487 0.92155 0.98999 1.01696 1.19245 0.93010 0.91449 0.85245 0.95056 1.21907 0.92431 1.38306 1.05717 0.92372 1.24939 0.97895 0.94913 0.95752 1.69894 1.34792 1.37911 1.09490 0.86615 0.86073 0.77851 0.77899 1.19866 1.20960 1.21103 1.60509 1.52913 1.04848 1.11265 1.21332 0.92844 0.92252 0.96853 0.88359 1.22550 0.98381 0.99251 1.03361 1.21620 0.82145 0.80212 0.85868 1.90679 1.51487 1.55631 1.38844 1.43867 1.49259 1.10980 1.28908 1.17648 0.91723 0.94452 0.87899 1.20930 0.97242 0.99823 1.00069 1.20766 0.98037 0.99059 0.92274 1.21044 1.00961 0.98409 0.98010 1.21546 0.99924 0.99155 0.97216 1.85719 1.50463 1.48136 1.02548 1.23673 1.01041 1.03199 1.03623 1.20755 1.00611 1.01522 0.90132 0.95644 0.92787 0.94783 0.89165 0.94938 0.92884 0.84426 0.93406 0.92783 0.88906 0.75410 0.85477 0.85542 0.86073 0.89851 0.89785 0.87508 0.84000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.85 37.16 0.37 -2.65 16 2 C -0.10 -2.51 5.45 -26.73 -0.15 -2.66 16 3 C 0.22 5.15 2.00 -68.86 -0.14 5.01 16 4 H 0.03 0.81 7.31 -51.93 -0.38 0.43 16 5 C -0.54 -13.72 7.20 -34.44 -0.25 -13.97 16 6 H 0.06 1.44 6.94 -52.49 -0.36 1.08 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.06 11.29 55.43 0.63 -23.43 16 9 Si 0.89 20.32 29.54 -169.99 -5.02 15.29 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 13 N -0.67 -13.79 4.91 -102.17 -0.50 -14.30 16 14 C 0.08 1.41 3.00 -68.87 -0.21 1.21 16 15 H 0.10 1.69 7.34 -51.93 -0.38 1.31 16 16 C -0.18 -2.71 8.77 37.16 0.33 -2.38 16 17 C 0.51 8.58 6.97 -10.98 -0.08 8.51 16 18 O -0.50 -10.06 14.08 5.55 0.08 -9.98 16 19 N -0.68 -8.88 5.20 -9.88 -0.05 -8.94 16 20 C 0.18 2.41 6.29 -83.72 -0.53 1.88 16 21 C -0.16 -1.69 9.96 -39.34 -0.39 -2.08 16 22 C -0.08 -0.79 10.03 -39.64 -0.40 -1.18 16 23 C -0.16 -1.68 9.36 -39.33 -0.37 -2.05 16 24 C -0.07 -0.84 6.11 -39.06 -0.24 -1.08 16 25 S -0.11 -1.28 22.56 -107.50 -2.43 -3.71 16 26 C -0.15 -1.03 9.15 101.05 0.92 -0.10 16 27 C -0.10 -1.55 8.40 -39.18 -0.33 -1.88 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 1.18 7.62 -51.93 -0.40 0.78 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 2.39 5.96 -51.93 -0.31 2.08 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 34 H 0.34 7.13 8.00 -39.29 -0.31 6.81 16 35 H 0.05 0.58 7.68 -51.93 -0.40 0.18 16 36 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 37 H 0.09 1.65 6.29 -51.93 -0.33 1.32 16 38 H 0.41 4.01 8.40 -40.82 -0.34 3.67 16 39 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 40 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 41 H 0.12 0.98 5.87 -52.48 -0.31 0.67 16 42 H 0.08 0.50 7.76 -51.93 -0.40 0.09 16 43 H 0.08 0.54 7.73 -51.93 -0.40 0.13 16 44 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.14 2.42 6.38 -52.49 -0.33 2.09 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -29.82 375.10 -9.94 -39.76 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -6.75 Total: 11.41 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -1.54 Total: -11.75 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.07 Total: -46.67 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: -1.28 SS G_CDS: -2.43 Total: -3.71 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.82 -9.94 -39.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572972020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.876 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds