Wall clock time and date at job start Tue Mar 31 2020 14:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 110.36640 * 2 1 4 4 C 1.53730 * 110.41953 * 237.64334 * 2 1 3 5 5 N 1.46538 * 105.28371 * 241.05779 * 4 2 1 6 6 C 1.34773 * 124.98309 * 180.02562 * 5 4 2 7 7 O 1.21591 * 120.00314 * 175.00564 * 6 5 4 8 8 N 1.34778 * 120.00156 * 355.01493 * 6 5 4 9 9 C 1.39230 * 120.00204 * 187.63369 * 8 6 5 10 10 C 1.39484 * 119.83516 * 33.14245 * 9 8 6 11 11 C 1.36373 * 120.16378 * 179.72150 * 10 9 8 12 12 C 1.40862 * 119.82845 * 0.52895 * 11 10 9 13 13 C 1.41155 * 120.16070 * 179.76520 * 12 11 10 14 14 H 1.08004 * 120.00219 * 210.48279 * 13 12 11 15 15 C 1.39899 * 120.00147 * 30.47977 * 13 12 11 16 16 N 1.30876 * 119.99671 * 11.20232 * 15 13 12 17 17 Si 1.86799 * 120.00183 * 191.19859 * 15 13 12 18 18 H 1.48498 * 109.46829 * 60.00376 * 17 15 13 19 19 H 1.48506 * 109.47093 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47156 * 300.00127 * 17 15 13 21 21 C 1.40862 * 119.67788 * 359.74597 * 12 11 10 22 22 C 1.36373 * 119.82928 * 359.97438 * 21 12 11 23 23 C 1.40045 * 109.92764 * 0.07767 * 5 4 2 24 24 C 1.39622 * 129.30933 * 179.97438 * 23 5 4 25 25 C 1.37842 * 120.28608 * 179.97438 * 24 23 5 26 26 C 1.38304 * 120.22126 * 0.02562 * 25 24 23 27 27 C 1.38221 * 119.82877 * 359.97438 * 26 25 24 28 28 C 1.38193 * 120.14949 * 0.02562 * 27 26 25 29 29 H 1.09007 * 109.47257 * 182.35521 * 1 2 3 30 30 H 1.09000 * 109.47709 * 302.36056 * 1 2 3 31 31 H 1.09003 * 109.47303 * 62.36153 * 1 2 3 32 32 H 1.09003 * 110.29582 * 0.03002 * 4 2 1 33 33 H 1.08997 * 110.30195 * 122.07887 * 4 2 1 34 34 H 0.97006 * 119.99548 * 7.62272 * 8 6 5 35 35 H 1.07996 * 119.91281 * 359.97438 * 10 9 8 36 36 H 1.08000 * 120.08222 * 180.26901 * 11 10 9 37 37 H 0.97000 * 120.00229 * 179.97438 * 16 15 13 38 38 H 1.08002 * 120.09062 * 180.02562 * 21 12 11 39 39 H 1.07997 * 119.92066 * 180.02562 * 22 21 12 40 40 H 1.07996 * 119.85824 * 359.94244 * 24 23 5 41 41 H 1.07999 * 119.88882 * 179.97438 * 25 24 23 42 42 H 1.07995 * 120.08287 * 180.02562 * 26 25 24 43 43 H 1.07998 * 119.92816 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0663 -0.7710 -1.2170 5 7 2.8421 -1.8820 -0.6592 6 6 3.4912 -2.8129 -1.3861 7 8 4.1836 -3.6440 -0.8308 8 7 3.3732 -2.8225 -2.7287 9 6 3.9107 -3.8732 -3.4673 10 6 3.9357 -5.1593 -2.9278 11 6 4.4555 -6.1943 -3.6477 12 6 4.9781 -5.9600 -4.9346 13 6 5.5223 -7.0253 -5.6838 14 1 6.3227 -6.8391 -6.3847 15 6 5.0251 -8.3225 -5.5185 16 7 3.9215 -8.5190 -4.8430 17 14 5.9361 -9.7739 -6.2621 18 1 7.3072 -9.8404 -5.6956 19 1 5.2083 -11.0294 -5.9468 20 1 6.0168 -9.6056 -7.7352 21 6 4.9547 -4.6575 -5.4704 22 6 4.4264 -3.6334 -4.7410 23 6 2.8077 -1.8331 0.7400 24 6 3.4035 -2.6873 1.6699 25 6 3.2469 -2.4624 3.0207 26 6 2.4974 -1.3884 3.4653 27 6 1.9044 -0.5383 2.5508 28 6 2.0587 -0.7600 1.1956 29 1 -0.3634 -1.0269 0.0422 30 1 -0.3634 0.5500 0.8680 31 1 -0.3634 0.4767 -0.9104 32 1 1.2401 -1.1511 -1.8179 33 1 2.7070 -0.1277 -1.8200 34 1 2.9135 -2.0974 -3.1803 35 1 3.5387 -5.3364 -1.9393 36 1 4.4702 -7.1904 -3.2304 37 1 3.5764 -9.4183 -4.7287 38 1 5.3532 -4.4703 -6.4566 39 1 4.4073 -2.6342 -5.1504 40 1 3.9893 -3.5283 1.3293 41 1 3.7103 -3.1274 3.7344 42 1 2.3764 -1.2140 4.5242 43 1 1.3191 0.3011 2.8962 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573280688.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:21 Heat of formation + Delta-G solvation = 28.061033 kcal Electronic energy + Delta-G solvation = -25960.013638 eV Core-core repulsion = 22355.737693 eV Total energy + Delta-G solvation = -3604.275945 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.28382 -39.27009 -37.39032 -36.49232 -34.57089 -33.49127 -32.92304 -30.09478 -29.86020 -29.51895 -28.69245 -26.83413 -24.99714 -23.14996 -22.81255 -21.41274 -20.90286 -20.78332 -19.51482 -18.04629 -17.30149 -16.72804 -16.33584 -16.02437 -15.58972 -15.29362 -14.97155 -14.41221 -14.06959 -13.95207 -13.75436 -13.48351 -13.12363 -13.03708 -12.69626 -12.69541 -12.33484 -12.16785 -11.93216 -11.82850 -11.71756 -11.44633 -11.37272 -11.15006 -11.10234 -10.80470 -10.71044 -10.23047 -9.97912 -9.73063 -9.52144 -9.21661 -8.98041 -8.82451 -7.77048 -7.55473 -6.94144 -6.69022 -4.31808 1.31307 1.41091 2.52047 2.72387 3.03996 3.08532 3.10851 3.13726 3.49181 3.84466 3.95846 4.04375 4.21652 4.41930 4.66756 4.73815 4.92361 5.02842 5.06748 5.15569 5.30805 5.38537 5.47104 5.53445 5.57259 5.66507 5.70263 5.93485 5.98680 6.09424 6.15012 6.34140 6.41269 6.47607 6.57831 6.72999 6.82972 7.01769 7.07364 7.12993 7.24311 7.29449 7.59651 7.73066 7.92901 8.04995 8.22108 8.31105 8.61976 8.81232 8.89232 8.99726 10.24645 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.023178 B = 0.002711 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.776302 B =10325.089804 C =11060.226316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.052 4.052 3 H 0.094 0.906 4 C 0.099 3.901 5 N -0.572 5.572 6 C 0.704 3.296 7 O -0.553 6.553 8 N -0.656 5.656 9 C 0.014 3.986 10 C -0.089 4.089 11 C -0.144 4.144 12 C 0.106 3.894 13 C -0.462 4.462 14 H 0.077 0.923 15 C 0.073 3.927 16 N -0.800 5.800 17 Si 0.911 3.089 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.209 4.209 22 C -0.107 4.107 23 C 0.180 3.820 24 C -0.136 4.136 25 C -0.091 4.091 26 C -0.154 4.154 27 C -0.076 4.076 28 C -0.145 4.145 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.392 0.608 35 H 0.101 0.899 36 H 0.120 0.880 37 H 0.280 0.720 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.142 0.858 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.173 15.521 10.578 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.071 4.071 3 H 0.112 0.888 4 C -0.024 4.024 5 N -0.298 5.298 6 C 0.407 3.593 7 O -0.428 6.428 8 N -0.302 5.302 9 C -0.078 4.078 10 C -0.109 4.109 11 C -0.164 4.164 12 C 0.104 3.896 13 C -0.492 4.492 14 H 0.095 0.905 15 C -0.144 4.144 16 N -0.426 5.426 17 Si 0.736 3.264 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.229 4.229 22 C -0.127 4.127 23 C 0.083 3.917 24 C -0.157 4.157 25 C -0.110 4.110 26 C -0.173 4.173 27 C -0.095 4.095 28 C -0.149 4.149 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.226 0.774 35 H 0.119 0.881 36 H 0.137 0.863 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.160 0.840 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.789 14.609 10.854 19.425 hybrid contribution 0.063 -0.295 -0.670 0.735 sum -6.726 14.314 10.184 18.811 Atomic orbital electron populations 1.21814 0.93052 1.02614 1.02215 1.20597 0.96703 0.99095 0.90669 0.88780 1.22244 0.95557 0.87768 0.96833 1.45147 1.51843 1.28474 1.04326 1.15666 0.80371 0.81082 0.82149 1.90913 1.41903 1.39717 1.70279 1.42123 1.58761 1.25573 1.03716 1.16994 1.10993 0.86167 0.93676 1.20420 1.00550 0.91059 0.98846 1.20965 1.03323 0.97890 0.94196 1.17665 0.89368 0.91649 0.90949 1.19483 1.17350 0.91593 1.20746 0.90485 1.25893 0.94042 1.00400 0.94062 1.69804 1.16610 1.23876 1.32354 0.86321 0.80424 0.79563 0.80100 1.18889 1.20379 1.19084 1.20589 1.09058 0.93903 0.99357 1.19989 1.00912 0.97539 0.94286 1.18208 0.96099 0.95211 0.82183 1.21050 1.02070 1.00835 0.91724 1.20931 0.97952 0.97366 0.94718 1.20944 1.00629 0.96534 0.99187 1.20252 0.99357 0.99292 0.90574 1.19903 1.02868 0.97888 0.94252 0.92163 0.91907 0.91913 0.89961 0.90204 0.77426 0.88071 0.86254 0.90870 0.88442 0.89140 0.84020 0.85687 0.85975 0.86153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.05 37.15 0.34 -0.68 16 2 C -0.05 -0.47 3.62 -91.14 -0.33 -0.80 16 3 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 4 C 0.10 1.03 5.98 -3.64 -0.02 1.01 16 5 N -0.57 -8.70 3.13 -118.19 -0.37 -9.07 16 6 C 0.70 13.45 8.11 -86.92 -0.70 12.75 16 7 O -0.55 -12.65 12.30 5.29 0.07 -12.58 16 8 N -0.66 -12.02 5.26 -14.10 -0.07 -12.10 16 9 C 0.01 0.32 6.28 -83.57 -0.52 -0.21 16 10 C -0.09 -2.23 8.57 -39.79 -0.34 -2.57 16 11 C -0.14 -3.87 8.59 -39.26 -0.34 -4.21 16 12 C 0.11 2.85 5.53 -106.81 -0.59 2.26 16 13 C -0.46 -12.29 9.04 -37.85 -0.34 -12.63 16 14 H 0.08 1.95 7.87 -52.48 -0.41 1.54 16 15 C 0.07 1.85 5.23 -17.34 -0.09 1.76 16 16 N -0.80 -21.03 10.98 55.55 0.61 -20.43 16 17 Si 0.91 18.94 29.57 -169.99 -5.03 13.91 16 18 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 20 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 21 C -0.21 -5.05 9.74 -39.26 -0.38 -5.44 16 22 C -0.11 -2.34 9.89 -39.79 -0.39 -2.73 16 23 C 0.18 2.69 6.63 -83.47 -0.55 2.13 16 24 C -0.14 -2.08 9.46 -39.21 -0.37 -2.45 16 25 C -0.09 -1.10 10.02 -39.70 -0.40 -1.50 16 26 C -0.15 -1.58 10.06 -39.56 -0.40 -1.98 16 27 C -0.08 -0.77 10.04 -39.60 -0.40 -1.17 16 28 C -0.15 -1.70 5.55 -104.27 -0.58 -2.28 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.76 7.70 -51.93 -0.40 0.36 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.39 5.64 7.77 -40.82 -0.32 5.33 16 35 H 0.10 2.58 6.45 -52.49 -0.34 2.24 16 36 H 0.12 3.34 6.36 -52.49 -0.33 3.01 16 37 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 38 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 39 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.14 2.50 6.31 -52.49 -0.33 2.17 16 41 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -31.19 355.71 -11.35 -42.54 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -5.50 Total: 11.10 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -6.42 Total: -18.74 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.16 Total: -41.59 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.07 Total: -12.58 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.19 -11.35 -42.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573280688.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.602 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds