Wall clock time and date at job start Tue Mar 31 2020 14:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 110.36640 * 2 1 4 4 C 1.53730 * 110.41953 * 237.64334 * 2 1 3 5 5 N 1.46538 * 105.28371 * 241.05779 * 4 2 1 6 6 C 1.34773 * 124.98309 * 180.02562 * 5 4 2 7 7 O 1.21591 * 120.00314 * 175.00564 * 6 5 4 8 8 N 1.34778 * 120.00156 * 355.01493 * 6 5 4 9 9 C 1.39230 * 120.00204 * 187.63369 * 8 6 5 10 10 C 1.39484 * 119.83516 * 33.14245 * 9 8 6 11 11 C 1.36373 * 120.16378 * 179.72150 * 10 9 8 12 12 C 1.40862 * 119.82845 * 0.52895 * 11 10 9 13 13 C 1.41155 * 120.16070 * 179.76520 * 12 11 10 14 14 H 1.08004 * 120.00219 * 210.48279 * 13 12 11 15 15 C 1.39899 * 120.00147 * 30.47977 * 13 12 11 16 16 N 1.30876 * 119.99671 * 11.20232 * 15 13 12 17 17 Si 1.86799 * 120.00183 * 191.19859 * 15 13 12 18 18 H 1.48498 * 109.46829 * 60.00376 * 17 15 13 19 19 H 1.48506 * 109.47093 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47156 * 300.00127 * 17 15 13 21 21 C 1.40862 * 119.67788 * 359.74597 * 12 11 10 22 22 C 1.36373 * 119.82928 * 359.97438 * 21 12 11 23 23 C 1.40045 * 109.92764 * 0.07767 * 5 4 2 24 24 C 1.39622 * 129.30933 * 179.97438 * 23 5 4 25 25 C 1.37842 * 120.28608 * 179.97438 * 24 23 5 26 26 C 1.38304 * 120.22126 * 0.02562 * 25 24 23 27 27 C 1.38221 * 119.82877 * 359.97438 * 26 25 24 28 28 C 1.38193 * 120.14949 * 0.02562 * 27 26 25 29 29 H 1.09007 * 109.47257 * 182.35521 * 1 2 3 30 30 H 1.09000 * 109.47709 * 302.36056 * 1 2 3 31 31 H 1.09003 * 109.47303 * 62.36153 * 1 2 3 32 32 H 1.09003 * 110.29582 * 0.03002 * 4 2 1 33 33 H 1.08997 * 110.30195 * 122.07887 * 4 2 1 34 34 H 0.97006 * 119.99548 * 7.62272 * 8 6 5 35 35 H 1.07996 * 119.91281 * 359.97438 * 10 9 8 36 36 H 1.08000 * 120.08222 * 180.26901 * 11 10 9 37 37 H 0.97000 * 120.00229 * 179.97438 * 16 15 13 38 38 H 1.08002 * 120.09062 * 180.02562 * 21 12 11 39 39 H 1.07997 * 119.92066 * 180.02562 * 22 21 12 40 40 H 1.07996 * 119.85824 * 359.94244 * 24 23 5 41 41 H 1.07999 * 119.88882 * 179.97438 * 25 24 23 42 42 H 1.07995 * 120.08287 * 180.02562 * 26 25 24 43 43 H 1.07998 * 119.92816 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0663 -0.7710 -1.2170 5 7 2.8421 -1.8820 -0.6592 6 6 3.4912 -2.8129 -1.3861 7 8 4.1836 -3.6440 -0.8308 8 7 3.3732 -2.8225 -2.7287 9 6 3.9107 -3.8732 -3.4673 10 6 3.9357 -5.1593 -2.9278 11 6 4.4555 -6.1943 -3.6477 12 6 4.9781 -5.9600 -4.9346 13 6 5.5223 -7.0253 -5.6838 14 1 6.3227 -6.8391 -6.3847 15 6 5.0251 -8.3225 -5.5185 16 7 3.9215 -8.5190 -4.8430 17 14 5.9361 -9.7739 -6.2621 18 1 7.3072 -9.8404 -5.6956 19 1 5.2083 -11.0294 -5.9468 20 1 6.0168 -9.6056 -7.7352 21 6 4.9547 -4.6575 -5.4704 22 6 4.4264 -3.6334 -4.7410 23 6 2.8077 -1.8331 0.7400 24 6 3.4035 -2.6873 1.6699 25 6 3.2469 -2.4624 3.0207 26 6 2.4974 -1.3884 3.4653 27 6 1.9044 -0.5383 2.5508 28 6 2.0587 -0.7600 1.1956 29 1 -0.3634 -1.0269 0.0422 30 1 -0.3634 0.5500 0.8680 31 1 -0.3634 0.4767 -0.9104 32 1 1.2401 -1.1511 -1.8179 33 1 2.7070 -0.1277 -1.8200 34 1 2.9135 -2.0974 -3.1803 35 1 3.5387 -5.3364 -1.9393 36 1 4.4702 -7.1904 -3.2304 37 1 3.5764 -9.4183 -4.7287 38 1 5.3532 -4.4703 -6.4566 39 1 4.4073 -2.6342 -5.1504 40 1 3.9893 -3.5283 1.3293 41 1 3.7103 -3.1274 3.7344 42 1 2.3764 -1.2140 4.5242 43 1 1.3191 0.3011 2.8962 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573280688.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:20 Heat of formation + Delta-G solvation = 11.699186 kcal Electronic energy + Delta-G solvation = -25960.723141 eV Core-core repulsion = 22355.737693 eV Total energy + Delta-G solvation = -3604.985448 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.42443 -40.67476 -39.09630 -37.52557 -36.30786 -34.82943 -34.36944 -31.52700 -31.30207 -30.78988 -30.21865 -27.74796 -26.71421 -24.31730 -23.84465 -23.21643 -22.52035 -21.66808 -20.97121 -19.42603 -19.21175 -18.13963 -17.44106 -17.34194 -16.91956 -16.59794 -16.22060 -15.81028 -15.54836 -15.22439 -14.98783 -14.70382 -14.49277 -14.19745 -13.99217 -13.94618 -13.67452 -13.56106 -13.35858 -13.11895 -12.96335 -12.86194 -12.78788 -12.47662 -12.42510 -12.08760 -11.76650 -11.64183 -11.52815 -11.27315 -11.24045 -11.04397 -10.78476 -9.74862 -9.50352 -8.97046 -8.69432 -8.55871 -6.31075 0.33606 0.43553 0.82318 1.09815 1.35494 1.37874 1.49340 1.50770 2.01417 2.21500 2.75978 2.82909 2.87609 3.43338 3.53134 3.69385 4.02132 4.10566 4.14596 4.30047 4.37717 4.39725 4.43723 4.52326 4.58612 4.63827 4.71611 4.87219 4.94354 4.98123 5.07999 5.10856 5.15393 5.25018 5.30022 5.37251 5.38972 5.51698 5.52152 5.62720 5.64567 5.77337 5.98759 6.07933 6.08149 6.13523 6.31031 6.65054 6.80247 6.92099 6.97749 7.40528 8.37267 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.023178 B = 0.002711 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.776302 B =10325.089804 C =11060.226316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.045 4.045 3 H 0.122 0.878 4 C 0.086 3.914 5 N -0.570 5.570 6 C 0.699 3.301 7 O -0.603 6.603 8 N -0.647 5.647 9 C 0.028 3.972 10 C -0.103 4.103 11 C -0.168 4.168 12 C 0.074 3.926 13 C -0.496 4.496 14 H 0.082 0.918 15 C 0.028 3.972 16 N -0.837 5.837 17 Si 0.986 3.014 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.255 1.255 21 C -0.214 4.214 22 C -0.099 4.099 23 C 0.136 3.864 24 C -0.170 4.170 25 C -0.100 4.100 26 C -0.142 4.142 27 C -0.072 4.072 28 C -0.137 4.137 29 H 0.039 0.961 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.415 0.585 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.285 0.715 38 H 0.116 0.884 39 H 0.138 0.862 40 H 0.100 0.900 41 H 0.138 0.862 42 H 0.158 0.842 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.529 19.102 10.802 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.063 4.063 3 H 0.140 0.860 4 C -0.034 4.034 5 N -0.296 5.296 6 C 0.402 3.598 7 O -0.482 6.482 8 N -0.294 5.294 9 C -0.065 4.065 10 C -0.123 4.123 11 C -0.188 4.188 12 C 0.072 3.928 13 C -0.526 4.526 14 H 0.100 0.900 15 C -0.185 4.185 16 N -0.463 5.463 17 Si 0.806 3.194 18 H -0.187 1.187 19 H -0.195 1.195 20 H -0.179 1.179 21 C -0.234 4.234 22 C -0.119 4.119 23 C 0.040 3.960 24 C -0.191 4.191 25 C -0.118 4.118 26 C -0.161 4.161 27 C -0.090 4.090 28 C -0.140 4.140 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.252 0.748 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.134 0.866 39 H 0.156 0.844 40 H 0.119 0.881 41 H 0.156 0.844 42 H 0.175 0.825 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.195 18.274 11.097 22.897 hybrid contribution 0.401 -1.214 -0.533 1.385 sum -7.795 17.060 10.564 21.526 Atomic orbital electron populations 1.21806 0.91478 1.01880 1.04087 1.20721 0.97791 0.99576 0.88247 0.86022 1.22698 0.95892 0.86771 0.98082 1.45099 1.51340 1.28539 1.04639 1.15868 0.80326 0.81332 0.82261 1.90891 1.44117 1.41962 1.71189 1.41847 1.58863 1.25194 1.03524 1.17038 1.09335 0.86088 0.94066 1.20404 1.01234 0.92468 0.98238 1.20822 1.05524 0.97316 0.95136 1.17996 0.90433 0.93379 0.91032 1.19771 1.18306 0.92756 1.21801 0.90028 1.26812 0.94493 1.02978 0.94233 1.69895 1.18067 1.24745 1.33639 0.85196 0.78784 0.75797 0.79576 1.18702 1.19547 1.17859 1.20886 1.08822 0.93375 1.00324 1.20353 0.98987 0.99155 0.93415 1.18576 0.98347 0.97076 0.81960 1.20994 1.03555 1.00811 0.93770 1.21146 0.98560 0.98633 0.93478 1.21389 0.98580 0.94948 1.01165 1.20755 0.98651 0.99924 0.89701 1.20328 1.01255 0.96581 0.95865 0.94148 0.90243 0.89934 0.88766 0.88046 0.74762 0.89654 0.88807 0.90422 0.86620 0.84447 0.88142 0.84425 0.82470 0.82210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.05 71.98 0.65 -0.78 16 2 C -0.05 -0.64 3.62 -11.13 -0.04 -0.68 16 3 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 4 C 0.09 1.58 5.98 86.62 0.52 2.10 16 5 N -0.57 -17.36 3.13 -646.12 -2.03 -19.38 16 6 C 0.70 27.59 8.11 179.06 1.45 29.04 16 7 O -0.60 -29.72 12.30 -4.00 -0.05 -29.77 16 8 N -0.65 -23.46 5.26 -316.78 -1.67 -25.12 16 9 C 0.03 1.29 6.28 38.57 0.24 1.54 16 10 C -0.10 -5.51 8.57 22.13 0.19 -5.32 16 11 C -0.17 -9.67 8.59 22.48 0.19 -9.47 16 12 C 0.07 4.14 5.53 -21.28 -0.12 4.03 16 13 C -0.50 -27.41 9.04 23.39 0.21 -27.20 16 14 H 0.08 4.25 7.87 -2.91 -0.02 4.23 16 15 C 0.03 1.47 5.23 85.24 0.45 1.92 16 16 N -0.84 -46.20 10.98 21.82 0.24 -45.96 16 17 Si 0.99 39.72 29.57 68.60 2.03 41.74 16 18 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 19 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 20 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 21 C -0.21 -10.36 9.74 22.48 0.22 -10.14 16 22 C -0.10 -4.20 9.89 22.14 0.22 -3.99 16 23 C 0.14 4.11 6.63 38.24 0.25 4.36 16 24 C -0.17 -5.58 9.46 22.51 0.21 -5.36 16 25 C -0.10 -2.41 10.02 22.19 0.22 -2.19 16 26 C -0.14 -2.51 10.06 22.28 0.22 -2.29 16 27 C -0.07 -1.19 10.04 22.25 0.22 -0.96 16 28 C -0.14 -2.87 5.55 -19.63 -0.11 -2.98 16 29 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 1.49 7.70 -2.39 -0.02 1.47 16 33 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.41 11.06 7.77 -92.70 -0.72 10.34 16 35 H 0.09 4.75 6.45 -2.91 -0.02 4.73 16 36 H 0.09 5.75 6.36 -2.91 -0.02 5.73 16 37 H 0.29 14.40 8.30 -92.71 -0.77 13.63 16 38 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 39 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 40 H 0.10 4.05 6.31 -2.91 -0.02 4.03 16 41 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 42 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 43 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -75.53 355.71 4.06 -71.48 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: 0.32 Total: 35.39 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 5.21 Total: -28.37 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -3.45 Total: -90.46 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.05 Total: -29.77 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.74 kcal Total: -75.53 4.06 -71.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573280688.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.175 kcal (2) G-P(sol) polarization free energy of solvation -75.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds