Wall clock time and date at job start Tue Mar 31 2020 14:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.37013 * 2 1 4 4 C 1.53740 * 110.32625 * 122.53854 * 2 1 3 5 5 N 1.46540 * 105.19677 * 119.07882 * 4 2 1 6 6 C 1.34779 * 124.97870 * 179.89563 * 5 4 2 7 7 O 1.21585 * 120.00208 * 184.43640 * 6 5 4 8 8 N 1.34776 * 120.00184 * 4.43770 * 6 5 4 9 9 C 1.39223 * 120.00214 * 172.53911 * 8 6 5 10 10 C 1.39488 * 119.83613 * 146.02270 * 9 8 6 11 11 C 1.36368 * 120.16943 * 180.23265 * 10 9 8 12 12 C 1.40864 * 119.82735 * 359.50146 * 11 10 9 13 13 C 1.41156 * 120.16405 * 180.25080 * 12 11 10 14 14 H 1.07998 * 120.00449 * 211.28037 * 13 12 11 15 15 C 1.39903 * 119.99806 * 31.27943 * 13 12 11 16 16 N 1.30879 * 119.99765 * 8.02051 * 15 13 12 17 17 Si 1.86797 * 119.99748 * 188.02564 * 15 13 12 18 18 H 1.48500 * 109.47340 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47220 * 120.00073 * 17 15 13 20 20 H 1.48507 * 109.46837 * 239.99859 * 17 15 13 21 21 C 1.40867 * 119.67629 * 0.49243 * 12 11 10 22 22 C 1.36370 * 119.82853 * 359.75881 * 21 12 11 23 23 C 1.39834 * 110.04477 * 359.63221 * 5 4 2 24 24 C 1.39628 * 129.34288 * 180.21929 * 23 5 4 25 25 C 1.37846 * 120.28576 * 180.02562 * 24 23 5 26 26 C 1.38302 * 120.22224 * 359.97345 * 25 24 23 27 27 C 1.38221 * 119.82417 * 0.02562 * 26 25 24 28 28 C 1.38182 * 120.15742 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.47132 * 180.90269 * 1 2 3 30 30 H 1.09001 * 109.46993 * 300.89793 * 1 2 3 31 31 H 1.08995 * 109.47199 * 60.89874 * 1 2 3 32 32 H 1.09000 * 110.40277 * 0.09593 * 4 2 1 33 33 H 1.08991 * 110.19628 * 237.95657 * 4 2 1 34 34 H 0.97008 * 119.99842 * 352.53996 * 8 6 5 35 35 H 1.08010 * 119.91224 * 359.95197 * 10 9 8 36 36 H 1.08000 * 120.08028 * 179.71706 * 11 10 9 37 37 H 0.97001 * 119.99831 * 180.02562 * 16 15 13 38 38 H 1.08004 * 120.09079 * 179.77911 * 21 12 11 39 39 H 1.07994 * 119.92298 * 179.97438 * 22 21 12 40 40 H 1.08001 * 119.85668 * 0.02562 * 24 23 5 41 41 H 1.07995 * 119.88574 * 180.02562 * 25 24 23 42 42 H 1.07995 * 120.08429 * 179.97438 * 26 25 24 43 43 H 1.08003 * 119.92175 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0640 -0.7754 1.2154 5 7 2.8419 -1.8827 0.6530 6 6 3.4920 -2.8158 1.3763 7 8 4.1779 -3.6496 0.8170 8 7 3.3819 -2.8249 2.7195 9 6 3.9231 -3.8755 3.4554 10 6 4.4575 -3.6335 4.7209 11 6 4.9936 -4.6567 5.4456 12 6 4.9974 -5.9626 4.9174 13 6 5.5458 -7.0279 5.6636 14 1 6.0118 -7.8593 5.1557 15 6 5.4856 -7.0067 7.0612 16 7 4.7870 -6.0839 7.6721 17 14 6.4025 -8.2955 8.0550 18 1 7.1112 -9.2195 7.1335 19 1 7.3884 -7.6275 8.9420 20 1 5.4361 -9.0644 8.8797 21 6 4.4559 -6.1992 3.6387 22 6 3.9278 -5.1651 2.9236 23 6 2.8061 -1.8327 -0.7440 24 6 3.4003 -2.6860 -1.6758 25 6 3.2418 -2.4592 -3.0262 26 6 2.4921 -1.3844 -3.4683 27 6 1.9008 -0.5353 -2.5519 28 6 2.0578 -0.7581 -1.1972 29 1 -0.3633 -1.0275 0.0162 30 1 -0.3633 0.5277 0.8818 31 1 -0.3633 0.4998 -0.8979 32 1 1.2380 -1.1594 1.8140 33 1 2.7036 -0.1329 1.8203 34 1 2.9254 -2.0992 3.1736 35 1 4.4507 -2.6322 5.1259 36 1 5.4111 -4.4669 6.4233 37 1 4.7456 -6.0690 8.6412 38 1 4.4585 -7.1972 3.2257 39 1 3.5126 -5.3447 1.9430 40 1 3.9866 -3.5274 -1.3371 41 1 3.7039 -3.1236 -3.7413 42 1 2.3698 -1.2086 -4.5268 43 1 1.3147 0.3043 -2.8954 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573280689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:25 Heat of formation + Delta-G solvation = 27.883438 kcal Electronic energy + Delta-G solvation = -25889.441147 eV Core-core repulsion = 22285.157501 eV Total energy + Delta-G solvation = -3604.283646 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.31443 -39.28482 -37.40489 -36.51068 -34.57743 -33.51571 -32.92570 -30.11810 -29.88580 -29.53805 -28.65907 -26.84600 -25.00879 -23.16910 -22.84079 -21.48616 -20.84672 -20.72222 -19.60311 -18.05470 -17.31022 -16.74892 -16.35191 -15.99880 -15.62256 -15.22014 -15.07447 -14.44504 -14.08910 -13.94898 -13.76618 -13.49624 -13.13456 -13.02082 -12.73086 -12.70490 -12.34741 -12.18853 -12.00238 -11.81004 -11.71391 -11.52305 -11.38614 -11.17301 -10.94206 -10.80357 -10.57499 -10.26637 -10.12398 -9.82698 -9.55253 -9.28504 -8.86754 -8.82919 -7.78601 -7.58161 -6.93159 -6.71055 -4.33138 1.29772 1.39486 2.50069 2.69418 3.05545 3.07874 3.08965 3.14154 3.47279 3.82922 3.95176 4.03044 4.20834 4.41117 4.65774 4.73053 4.91208 5.01843 5.05207 5.14706 5.29923 5.37344 5.46122 5.52802 5.55571 5.65478 5.69132 5.92391 5.96986 6.09660 6.17889 6.35749 6.40118 6.45783 6.56076 6.70006 6.81520 6.98892 7.06389 7.14014 7.20744 7.30579 7.59310 7.76862 7.87263 8.03337 8.24656 8.28781 8.59277 8.79361 8.88984 8.98228 10.23701 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.028937 B = 0.002559 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.370680 B =10937.430235 C =11692.358726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.052 4.052 3 H 0.095 0.905 4 C 0.098 3.902 5 N -0.571 5.571 6 C 0.704 3.296 7 O -0.555 6.555 8 N -0.656 5.656 9 C 0.015 3.985 10 C -0.115 4.115 11 C -0.142 4.142 12 C 0.105 3.895 13 C -0.459 4.459 14 H 0.078 0.922 15 C 0.072 3.928 16 N -0.806 5.806 17 Si 0.912 3.088 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.275 1.275 21 C -0.207 4.207 22 C -0.080 4.080 23 C 0.180 3.820 24 C -0.136 4.136 25 C -0.091 4.091 26 C -0.154 4.154 27 C -0.076 4.076 28 C -0.146 4.146 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.393 0.607 35 H 0.091 0.909 36 H 0.124 0.876 37 H 0.278 0.722 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.142 0.858 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.981 13.463 -12.991 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.071 4.071 3 H 0.113 0.887 4 C -0.024 4.024 5 N -0.297 5.297 6 C 0.407 3.593 7 O -0.431 6.431 8 N -0.302 5.302 9 C -0.078 4.078 10 C -0.136 4.136 11 C -0.162 4.162 12 C 0.103 3.897 13 C -0.490 4.490 14 H 0.096 0.904 15 C -0.144 4.144 16 N -0.433 5.433 17 Si 0.737 3.263 18 H -0.185 1.185 19 H -0.198 1.198 20 H -0.200 1.200 21 C -0.227 4.227 22 C -0.100 4.100 23 C 0.083 3.917 24 C -0.157 4.157 25 C -0.110 4.110 26 C -0.173 4.173 27 C -0.095 4.095 28 C -0.149 4.149 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.227 0.773 35 H 0.109 0.891 36 H 0.142 0.858 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.160 0.840 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.501 12.815 -12.958 19.708 hybrid contribution 0.086 -0.121 0.887 0.900 sum -7.415 12.694 -12.071 19.022 Atomic orbital electron populations 1.21818 0.93055 1.02569 1.02262 1.20606 0.96721 0.99114 0.90654 0.88734 1.22256 0.95546 0.87804 0.96798 1.45101 1.51701 1.28560 1.04349 1.15671 0.80319 0.81085 0.82189 1.90903 1.42350 1.39711 1.70087 1.42139 1.58823 1.25570 1.03627 1.16990 1.11010 0.86082 0.93701 1.20215 1.01136 0.98106 0.94137 1.20948 1.03139 0.91626 1.00506 1.17688 0.88710 0.92618 0.90721 1.19567 1.33257 1.05283 0.90868 0.90422 1.25891 0.93650 0.96395 0.98486 1.69804 1.31635 1.31238 1.10617 0.86198 0.79767 0.80746 0.79608 1.18498 1.19849 1.20029 1.20733 1.06921 0.97014 0.98013 1.20240 1.00221 0.91123 0.98408 1.18168 0.96105 0.95200 0.82226 1.21049 1.02121 1.00883 0.91697 1.20928 0.97948 0.97365 0.94727 1.20942 1.00657 0.96540 0.99179 1.20252 0.99340 0.99286 0.90576 1.19913 1.02893 0.97870 0.94267 0.92188 0.91901 0.91900 0.89897 0.90148 0.77325 0.89112 0.85839 0.91086 0.88536 0.88136 0.84027 0.85703 0.85977 0.86153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.04 37.16 0.34 -0.67 16 2 C -0.05 -0.47 3.63 -91.14 -0.33 -0.80 16 3 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 4 C 0.10 1.02 5.98 -3.64 -0.02 1.00 16 5 N -0.57 -8.58 3.13 -118.25 -0.37 -8.95 16 6 C 0.70 13.27 8.10 -86.92 -0.70 12.56 16 7 O -0.56 -12.44 12.33 5.29 0.07 -12.38 16 8 N -0.66 -11.99 5.26 -14.10 -0.07 -12.06 16 9 C 0.01 0.33 6.27 -83.57 -0.52 -0.20 16 10 C -0.12 -2.63 9.89 -39.79 -0.39 -3.03 16 11 C -0.14 -3.64 8.58 -39.26 -0.34 -3.98 16 12 C 0.11 2.82 5.53 -106.80 -0.59 2.23 16 13 C -0.46 -12.23 9.04 -37.85 -0.34 -12.57 16 14 H 0.08 2.00 7.86 -52.49 -0.41 1.59 16 15 C 0.07 1.79 5.28 -17.33 -0.09 1.70 16 16 N -0.81 -20.66 10.86 55.55 0.60 -20.05 16 17 Si 0.91 18.78 29.57 -169.99 -5.03 13.76 16 18 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 C -0.21 -5.26 9.74 -39.26 -0.38 -5.65 16 22 C -0.08 -1.93 8.57 -39.79 -0.34 -2.27 16 23 C 0.18 2.65 6.62 -83.57 -0.55 2.09 16 24 C -0.14 -2.04 9.46 -39.21 -0.37 -2.41 16 25 C -0.09 -1.07 10.02 -39.70 -0.40 -1.47 16 26 C -0.15 -1.55 10.06 -39.56 -0.40 -1.95 16 27 C -0.08 -0.76 10.03 -39.61 -0.40 -1.16 16 28 C -0.15 -1.68 5.55 -104.27 -0.58 -2.26 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.76 7.71 -51.93 -0.40 0.36 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.39 5.73 7.77 -40.82 -0.32 5.41 16 35 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 36 H 0.12 3.24 6.31 -52.49 -0.33 2.91 16 37 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 38 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 39 H 0.10 2.42 6.51 -52.49 -0.34 2.08 16 40 H 0.14 2.44 6.29 -52.49 -0.33 2.11 16 41 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 355.61 15.07 5.36 5.36 Total: -1.00 -30.86 355.61 -11.36 -42.22 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -5.49 Total: 10.93 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -6.42 Total: -18.82 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.16 Total: -41.07 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.07 Total: -12.38 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.86 -11.36 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573280689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.100 kcal (2) G-P(sol) polarization free energy of solvation -30.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds