Wall clock time and date at job start Tue Mar 31 2020 13:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46446 * 2 1 4 4 H 1.08992 * 109.47349 * 55.00238 * 3 2 1 5 5 C 1.50704 * 109.46536 * 174.99995 * 3 2 1 6 6 H 1.08007 * 119.99971 * 119.99597 * 5 3 2 7 7 C 1.37871 * 120.00255 * 299.99651 * 5 3 2 8 8 N 1.31513 * 120.00039 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00114 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47084 * 89.99915 * 9 7 5 11 11 H 1.48499 * 109.47086 * 209.99984 * 9 7 5 12 12 H 1.48506 * 109.46804 * 330.00174 * 9 7 5 13 13 N 1.46895 * 109.47046 * 294.99571 * 3 2 1 14 14 C 1.46903 * 111.00176 * 159.61198 * 13 3 2 15 15 H 1.09004 * 109.46383 * 39.65120 * 14 13 3 16 16 C 1.52993 * 109.47534 * 279.65441 * 14 13 3 17 17 C 1.50702 * 109.47298 * 159.64513 * 14 13 3 18 18 O 1.21298 * 119.99775 * 0.02562 * 17 14 13 19 19 N 1.34770 * 120.00036 * 179.97438 * 17 14 13 20 20 C 1.40149 * 120.00098 * 185.11029 * 19 17 14 21 21 C 1.38863 * 119.99284 * 214.25094 * 20 19 17 22 22 C 1.38040 * 120.01003 * 179.72572 * 21 20 19 23 23 C 1.38946 * 119.99002 * 0.55280 * 22 21 20 24 24 S 1.76200 * 120.00907 * 179.70375 * 23 22 21 25 25 C 1.81390 * 103.00173 * 0.02562 * 24 23 22 26 26 C 1.38947 * 119.97764 * 359.71968 * 23 22 21 27 27 C 1.38041 * 119.99470 * 0.02562 * 26 23 22 28 28 H 1.08996 * 109.47181 * 305.00410 * 1 2 3 29 29 H 1.09000 * 109.47261 * 65.00880 * 1 2 3 30 30 H 1.08998 * 109.46745 * 185.00192 * 1 2 3 31 31 H 1.08996 * 109.47246 * 239.99793 * 2 1 3 32 32 H 1.09000 * 109.46676 * 119.99433 * 2 1 3 33 33 H 0.97000 * 120.00178 * 179.97438 * 8 7 5 34 34 H 1.00901 * 111.00318 * 283.57377 * 13 3 2 35 35 H 1.09004 * 109.47106 * 295.02139 * 16 14 13 36 36 H 1.08991 * 109.47360 * 175.02175 * 16 14 13 37 37 H 1.09004 * 109.47153 * 55.01586 * 16 14 13 38 38 H 0.97001 * 119.99866 * 5.12436 * 19 17 14 39 39 H 1.08001 * 119.99689 * 0.02562 * 21 20 19 40 40 H 1.08004 * 120.00304 * 180.27465 * 22 21 20 41 41 H 1.09003 * 109.47642 * 300.00247 * 25 24 23 42 42 H 1.09003 * 109.46962 * 60.00323 * 25 24 23 43 43 H 1.09000 * 109.47430 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.00608 * 179.97438 * 26 23 22 45 45 H 1.07999 * 119.99623 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1472 1.8890 -0.6524 7 6 4.1432 0.8786 1.2279 8 7 3.4063 0.3369 2.1729 9 14 6.0050 0.8816 1.3817 10 1 6.4416 2.1145 2.0848 11 1 6.4396 -0.3094 2.1549 12 1 6.6135 0.8419 0.0277 13 7 1.6513 2.0993 -1.2552 14 6 1.6783 3.5613 -1.1149 15 1 2.5423 3.8530 -0.5176 16 6 0.3975 4.0310 -0.4223 17 6 1.7735 4.1953 -2.4788 18 8 1.8143 3.4977 -3.4702 19 7 1.8122 5.5372 -2.5969 20 6 1.7926 6.1298 -3.8668 21 6 2.5001 7.3023 -4.0967 22 6 2.4856 7.8832 -5.3489 23 6 1.7536 7.3007 -6.3762 24 16 1.7284 8.0460 -7.9727 25 6 2.7839 9.5055 -7.7584 26 6 1.0412 6.1306 -6.1442 27 6 1.0605 5.5475 -4.8931 28 1 -0.3633 0.5895 0.8417 29 1 -0.3634 0.4342 -0.9314 30 1 -0.3633 -1.0238 0.0896 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8294 -0.0616 2.9495 34 1 2.2393 1.7982 -2.0180 35 1 -0.4599 3.8181 -1.0609 36 1 0.4562 5.1037 -0.2386 37 1 0.2836 3.5057 0.5260 38 1 1.8539 6.0930 -1.8029 39 1 3.0658 7.7572 -3.2971 40 1 3.0396 8.7927 -5.5288 41 1 2.3605 10.1504 -6.9883 42 1 3.7835 9.1902 -7.4590 43 1 2.8426 10.0529 -8.6992 44 1 0.4717 5.6777 -6.9423 45 1 0.5064 4.6382 -4.7126 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581437101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:33 Heat of formation + Delta-G solvation = -15.494890 kcal Electronic energy + Delta-G solvation = -24618.331205 eV Core-core repulsion = 21147.610484 eV Total energy + Delta-G solvation = -3470.720720 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.50350 -38.60073 -36.24660 -34.72884 -33.16570 -31.50065 -31.36227 -30.08961 -29.12110 -28.57555 -26.07424 -24.34789 -23.09486 -22.79986 -21.78936 -19.81553 -19.42661 -18.09878 -17.56264 -16.89565 -16.46338 -15.61224 -15.26027 -14.88279 -14.76286 -14.51840 -14.43350 -14.16650 -13.80204 -13.68548 -13.30766 -13.04372 -12.93140 -12.78309 -12.21989 -12.13655 -12.10981 -11.59744 -11.58488 -11.52613 -11.18517 -11.13023 -10.86164 -10.68869 -10.66466 -10.50883 -10.18926 -9.71597 -9.60577 -9.42954 -9.15799 -9.08831 -8.93095 -8.41308 -7.42003 -7.35060 -6.04511 -4.18288 1.00226 1.21930 1.29016 2.16227 2.77196 3.08722 3.22739 3.31030 3.34827 3.61721 4.35426 4.62947 4.69655 4.70158 4.71681 4.91273 5.14378 5.17062 5.22079 5.25184 5.36778 5.42757 5.60535 5.79028 5.83005 5.86206 6.03357 6.14435 6.20956 6.33926 6.38226 6.40106 6.48966 6.58867 6.70779 6.86742 7.08494 7.17002 7.34313 7.41697 7.56553 7.73514 8.02753 8.09411 8.23703 8.29833 8.60190 8.93956 9.49992 10.94977 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019078 B = 0.002601 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.326072 B =10760.583038 C =11565.126152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.037 0.963 5 C -0.550 4.550 6 H 0.052 0.948 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.671 5.671 14 C 0.075 3.925 15 H 0.076 0.924 16 C -0.132 4.132 17 C 0.517 3.483 18 O -0.510 6.510 19 N -0.680 5.680 20 C 0.158 3.842 21 C -0.132 4.132 22 C -0.113 4.113 23 C -0.107 4.107 24 S -0.126 6.126 25 C -0.143 4.143 26 C -0.077 4.077 27 C -0.102 4.102 28 H 0.037 0.963 29 H 0.047 0.953 30 H 0.025 0.975 31 H 0.031 0.969 32 H 0.092 0.908 33 H 0.262 0.738 34 H 0.342 0.658 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.411 0.589 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.130 0.870 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.235 17.752 -12.416 22.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.055 0.945 5 C -0.589 4.589 6 H 0.070 0.930 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.304 5.304 14 C -0.039 4.039 15 H 0.094 0.906 16 C -0.190 4.190 17 C 0.306 3.694 18 O -0.383 6.383 19 N -0.326 5.326 20 C 0.061 3.939 21 C -0.154 4.154 22 C -0.137 4.137 23 C -0.220 4.220 24 S 0.115 5.885 25 C -0.312 4.312 26 C -0.101 4.101 27 C -0.124 4.124 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.161 0.839 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.247 0.753 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.124 0.876 44 H 0.148 0.852 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.413 16.763 -13.852 22.410 hybrid contribution 2.887 0.831 1.799 3.502 sum -2.526 17.594 -12.053 21.475 Atomic orbital electron populations 1.21694 0.98861 0.98384 1.00419 1.21489 0.92229 0.98942 1.01842 1.19242 0.92717 0.91356 0.85952 0.94477 1.21880 0.92839 1.38645 1.05535 0.92965 1.24911 0.97897 0.94855 0.95669 1.69870 1.34847 1.37988 1.09396 0.86676 0.86093 0.77578 0.78153 1.20758 1.21076 1.19979 1.60944 1.59370 1.00551 1.09542 1.21334 0.99475 0.92727 0.90378 0.90640 1.21731 0.96430 0.99224 1.01627 1.21438 0.74062 0.80949 0.92971 1.90681 1.46608 1.61541 1.39489 1.43789 1.74297 1.07759 1.06773 1.17837 0.96055 0.93703 0.86331 1.20790 1.00227 0.96978 0.97436 1.20885 1.00144 1.00298 0.92358 1.21571 1.03741 0.99885 0.96788 1.85438 1.63094 1.27981 1.11978 1.23647 1.02205 0.98555 1.06790 1.20634 0.98780 0.93685 0.97019 1.21138 0.98493 1.00769 0.92040 0.94403 0.93395 0.95625 0.95000 0.88995 0.92812 0.83870 0.92296 0.93259 0.90755 0.75303 0.85337 0.85717 0.89803 0.89780 0.87551 0.85226 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.74 37.16 0.36 -2.41 16 2 C -0.11 -2.51 5.45 -26.73 -0.15 -2.66 16 3 C 0.21 5.11 1.82 -68.86 -0.13 4.98 16 4 H 0.04 0.95 6.76 -51.93 -0.35 0.59 16 5 C -0.55 -14.41 8.02 -34.44 -0.28 -14.69 16 6 H 0.05 1.39 7.80 -52.48 -0.41 0.98 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.21 11.29 55.43 0.63 -23.58 16 9 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.67 -13.99 5.41 -102.17 -0.55 -14.54 16 14 C 0.07 1.30 2.87 -68.87 -0.20 1.11 16 15 H 0.08 1.40 7.50 -51.93 -0.39 1.01 16 16 C -0.13 -1.95 9.26 37.15 0.34 -1.60 16 17 C 0.52 8.53 6.91 -10.99 -0.08 8.46 16 18 O -0.51 -10.01 13.50 5.54 0.07 -9.93 16 19 N -0.68 -8.70 5.23 -9.81 -0.05 -8.76 16 20 C 0.16 2.04 6.26 -83.59 -0.52 1.52 16 21 C -0.13 -1.43 9.96 -39.42 -0.39 -1.82 16 22 C -0.11 -1.16 9.36 -39.39 -0.37 -1.53 16 23 C -0.11 -1.21 6.11 -39.06 -0.24 -1.45 16 24 S -0.13 -1.20 22.56 -107.50 -2.43 -3.63 16 25 C -0.14 -0.86 9.15 101.05 0.92 0.06 16 26 C -0.08 -0.95 9.78 -39.39 -0.39 -1.34 16 27 C -0.10 -1.41 8.65 -39.42 -0.34 -1.75 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.95 7.89 -51.93 -0.41 0.54 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.34 7.67 7.42 -39.29 -0.29 7.38 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.56 7.84 -51.93 -0.41 0.15 16 37 H 0.07 1.21 6.98 -51.93 -0.36 0.85 16 38 H 0.41 4.00 8.50 -40.82 -0.35 3.66 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.13 0.97 5.87 -52.48 -0.31 0.66 16 41 H 0.08 0.44 7.74 -51.92 -0.40 0.04 16 42 H 0.08 0.48 7.75 -51.92 -0.40 0.07 16 43 H 0.11 0.47 8.14 -51.92 -0.42 0.05 16 44 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 45 H 0.14 2.14 6.50 -52.49 -0.34 1.80 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -29.54 377.10 -10.02 -39.56 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -6.82 Total: 10.80 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -1.53 Total: -11.36 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.02 Total: -46.88 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.93 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: -1.20 SS G_CDS: -2.43 Total: -3.63 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.54 -10.02 -39.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581437101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.067 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds