Wall clock time and date at job start Tue Mar 31 2020 13:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46446 * 2 1 4 4 H 1.08992 * 109.47349 * 55.00238 * 3 2 1 5 5 C 1.50704 * 109.46536 * 174.99995 * 3 2 1 6 6 H 1.08007 * 119.99971 * 119.99597 * 5 3 2 7 7 C 1.37871 * 120.00255 * 299.99651 * 5 3 2 8 8 N 1.31513 * 120.00039 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00114 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47084 * 89.99915 * 9 7 5 11 11 H 1.48499 * 109.47086 * 209.99984 * 9 7 5 12 12 H 1.48506 * 109.46804 * 330.00174 * 9 7 5 13 13 N 1.46895 * 109.47046 * 294.99571 * 3 2 1 14 14 C 1.46903 * 111.00176 * 159.61198 * 13 3 2 15 15 H 1.09004 * 109.46383 * 39.65120 * 14 13 3 16 16 C 1.52993 * 109.47534 * 279.65441 * 14 13 3 17 17 C 1.50702 * 109.47298 * 159.64513 * 14 13 3 18 18 O 1.21298 * 119.99775 * 0.02562 * 17 14 13 19 19 N 1.34770 * 120.00036 * 179.97438 * 17 14 13 20 20 C 1.40149 * 120.00098 * 185.11029 * 19 17 14 21 21 C 1.38863 * 119.99284 * 214.25094 * 20 19 17 22 22 C 1.38040 * 120.01003 * 179.72572 * 21 20 19 23 23 C 1.38946 * 119.99002 * 0.55280 * 22 21 20 24 24 S 1.76200 * 120.00907 * 179.70375 * 23 22 21 25 25 C 1.81390 * 103.00173 * 0.02562 * 24 23 22 26 26 C 1.38947 * 119.97764 * 359.71968 * 23 22 21 27 27 C 1.38041 * 119.99470 * 0.02562 * 26 23 22 28 28 H 1.08996 * 109.47181 * 305.00410 * 1 2 3 29 29 H 1.09000 * 109.47261 * 65.00880 * 1 2 3 30 30 H 1.08998 * 109.46745 * 185.00192 * 1 2 3 31 31 H 1.08996 * 109.47246 * 239.99793 * 2 1 3 32 32 H 1.09000 * 109.46676 * 119.99433 * 2 1 3 33 33 H 0.97000 * 120.00178 * 179.97438 * 8 7 5 34 34 H 1.00901 * 111.00318 * 283.57377 * 13 3 2 35 35 H 1.09004 * 109.47106 * 295.02139 * 16 14 13 36 36 H 1.08991 * 109.47360 * 175.02175 * 16 14 13 37 37 H 1.09004 * 109.47153 * 55.01586 * 16 14 13 38 38 H 0.97001 * 119.99866 * 5.12436 * 19 17 14 39 39 H 1.08001 * 119.99689 * 0.02562 * 21 20 19 40 40 H 1.08004 * 120.00304 * 180.27465 * 22 21 20 41 41 H 1.09003 * 109.47642 * 300.00247 * 25 24 23 42 42 H 1.09003 * 109.46962 * 60.00323 * 25 24 23 43 43 H 1.09000 * 109.47430 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.00608 * 179.97438 * 26 23 22 45 45 H 1.07999 * 119.99623 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1472 1.8890 -0.6524 7 6 4.1432 0.8786 1.2279 8 7 3.4063 0.3369 2.1729 9 14 6.0050 0.8816 1.3817 10 1 6.4416 2.1145 2.0848 11 1 6.4396 -0.3094 2.1549 12 1 6.6135 0.8419 0.0277 13 7 1.6513 2.0993 -1.2552 14 6 1.6783 3.5613 -1.1149 15 1 2.5423 3.8530 -0.5176 16 6 0.3975 4.0310 -0.4223 17 6 1.7735 4.1953 -2.4788 18 8 1.8143 3.4977 -3.4702 19 7 1.8122 5.5372 -2.5969 20 6 1.7926 6.1298 -3.8668 21 6 2.5001 7.3023 -4.0967 22 6 2.4856 7.8832 -5.3489 23 6 1.7536 7.3007 -6.3762 24 16 1.7284 8.0460 -7.9727 25 6 2.7839 9.5055 -7.7584 26 6 1.0412 6.1306 -6.1442 27 6 1.0605 5.5475 -4.8931 28 1 -0.3633 0.5895 0.8417 29 1 -0.3634 0.4342 -0.9314 30 1 -0.3633 -1.0238 0.0896 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8294 -0.0616 2.9495 34 1 2.2393 1.7982 -2.0180 35 1 -0.4599 3.8181 -1.0609 36 1 0.4562 5.1037 -0.2386 37 1 0.2836 3.5057 0.5260 38 1 1.8539 6.0930 -1.8029 39 1 3.0658 7.7572 -3.2971 40 1 3.0396 8.7927 -5.5288 41 1 2.3605 10.1504 -6.9883 42 1 3.7835 9.1902 -7.4590 43 1 2.8426 10.0529 -8.6992 44 1 0.4717 5.6777 -6.9423 45 1 0.5064 4.6382 -4.7126 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581437101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:32 Heat of formation + Delta-G solvation = -32.869826 kcal Electronic energy + Delta-G solvation = -24619.084639 eV Core-core repulsion = 21147.610484 eV Total energy + Delta-G solvation = -3471.474154 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.66920 -39.69257 -37.92526 -35.88835 -34.88403 -33.33396 -32.23363 -31.22450 -30.16777 -29.49699 -27.91253 -25.69985 -24.55943 -23.87583 -23.01442 -21.36185 -20.96040 -19.09183 -18.72929 -18.41888 -17.97290 -16.81872 -16.63874 -16.49239 -15.74054 -15.65087 -15.51209 -15.32902 -14.89098 -14.70174 -14.58615 -14.44300 -13.91388 -13.82673 -13.62297 -13.51777 -13.19854 -13.12099 -13.01011 -12.90946 -12.81623 -12.52841 -12.50103 -12.39407 -12.06797 -11.70432 -11.50716 -11.48035 -11.20649 -11.07907 -10.73521 -10.44525 -10.04214 -9.90903 -9.13012 -8.22310 -8.05972 -6.28039 0.05585 0.32685 0.59167 1.36140 1.39873 1.48111 1.50968 1.52014 1.95986 2.39513 2.68260 3.13688 3.59530 3.64824 3.84475 3.91530 4.24636 4.29460 4.29854 4.30718 4.41866 4.43483 4.49891 4.62656 4.76125 4.81021 4.86450 4.92169 4.95785 4.98319 5.00698 5.19098 5.23396 5.27582 5.32609 5.40895 5.43816 5.51261 5.61861 5.76703 5.88892 6.07663 6.17652 6.28339 6.41220 6.75199 6.95476 7.08991 7.43242 8.90005 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019078 B = 0.002601 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.326072 B =10760.583038 C =11565.126152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.105 4.105 3 C 0.225 3.775 4 H 0.020 0.980 5 C -0.562 4.562 6 H 0.042 0.958 7 C 0.026 3.974 8 N -0.905 5.905 9 Si 0.945 3.055 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.278 1.278 13 N -0.669 5.669 14 C 0.073 3.927 15 H 0.066 0.934 16 C -0.124 4.124 17 C 0.522 3.478 18 O -0.548 6.548 19 N -0.660 5.660 20 C 0.134 3.866 21 C -0.123 4.123 22 C -0.111 4.111 23 C -0.109 4.109 24 S -0.152 6.152 25 C -0.136 4.136 26 C -0.092 4.092 27 C -0.120 4.120 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.020 0.980 32 H 0.066 0.934 33 H 0.263 0.737 34 H 0.331 0.669 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.427 0.573 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.125 0.875 44 H 0.132 0.868 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 20.549 -12.845 24.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.144 4.144 3 C 0.116 3.884 4 H 0.038 0.962 5 C -0.601 4.601 6 H 0.060 0.940 7 C -0.174 4.174 8 N -0.544 5.544 9 Si 0.772 3.228 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.203 1.203 13 N -0.300 5.300 14 C -0.041 4.041 15 H 0.084 0.916 16 C -0.182 4.182 17 C 0.310 3.690 18 O -0.424 6.424 19 N -0.307 5.307 20 C 0.038 3.962 21 C -0.145 4.145 22 C -0.135 4.135 23 C -0.222 4.222 24 S 0.089 5.911 25 C -0.304 4.304 26 C -0.115 4.115 27 C -0.142 4.142 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.149 0.851 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.266 0.734 39 H 0.175 0.825 40 H 0.174 0.826 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.143 0.857 44 H 0.150 0.850 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.635 19.618 -14.277 24.702 hybrid contribution 2.647 0.082 1.823 3.214 sum -1.989 19.700 -12.454 23.391 Atomic orbital electron populations 1.21542 0.96236 0.99595 1.00678 1.21383 0.94573 0.98485 0.99918 1.19003 0.91367 0.91473 0.86528 0.96186 1.22122 0.94195 1.38529 1.05304 0.93970 1.25568 1.01704 0.94673 0.95503 1.69976 1.36247 1.38450 1.09720 0.85763 0.81485 0.77801 0.77798 1.19847 1.20801 1.20308 1.60881 1.58567 1.02831 1.07748 1.21408 1.00520 0.90786 0.91366 0.91618 1.21690 0.94812 1.01461 1.00234 1.21140 0.73936 0.82075 0.91820 1.90672 1.48724 1.62727 1.40272 1.43466 1.72998 1.06491 1.07782 1.17991 0.97445 0.94885 0.85912 1.21095 0.99165 0.95680 0.98518 1.21277 0.99564 1.01008 0.91650 1.21792 1.02981 0.99375 0.98006 1.85581 1.64322 1.30117 1.11085 1.23787 1.01569 0.96640 1.08390 1.20720 0.99592 0.94566 0.96655 1.21047 0.99409 1.00487 0.93239 0.94286 0.92901 0.93899 0.96074 0.91608 0.92757 0.85135 0.92293 0.89328 0.92384 0.73420 0.82500 0.82638 0.88439 0.88925 0.85695 0.84999 0.86415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 9.74 71.98 0.70 -4.29 16 2 C -0.10 -5.07 5.45 30.60 0.17 -4.90 16 3 C 0.22 10.94 1.82 44.17 0.08 11.02 16 4 H 0.02 1.05 6.76 -2.39 -0.02 1.04 16 5 C -0.56 -30.07 8.02 25.60 0.21 -29.86 16 6 H 0.04 2.29 7.80 -2.91 -0.02 2.27 16 7 C 0.03 1.41 5.29 84.65 0.45 1.86 16 8 N -0.91 -50.29 11.29 21.44 0.24 -50.05 16 9 Si 0.95 42.84 29.54 68.60 2.03 44.87 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 13 N -0.67 -28.59 5.41 -477.16 -2.58 -31.17 16 14 C 0.07 2.56 2.87 44.17 0.13 2.68 16 15 H 0.07 2.45 7.50 -2.38 -0.02 2.44 16 16 C -0.12 -3.56 9.26 71.98 0.67 -2.89 16 17 C 0.52 17.31 6.91 87.66 0.61 17.91 16 18 O -0.55 -22.18 13.50 -3.08 -0.04 -22.23 16 19 N -0.66 -16.22 5.23 -303.33 -1.59 -17.80 16 20 C 0.13 3.35 6.26 38.11 0.24 3.58 16 21 C -0.12 -2.33 9.96 22.37 0.22 -2.10 16 22 C -0.11 -1.95 9.36 22.39 0.21 -1.74 16 23 C -0.11 -2.29 6.11 22.61 0.14 -2.16 16 24 S -0.15 -2.64 22.56 -56.49 -1.27 -3.91 16 25 C -0.14 -1.15 9.15 113.37 1.04 -0.12 16 26 C -0.09 -2.27 9.78 22.39 0.22 -2.05 16 27 C -0.12 -3.37 8.65 22.37 0.19 -3.18 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 2.07 7.89 -2.39 -0.02 2.05 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 3.53 5.95 -2.39 -0.01 3.52 16 33 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 34 H 0.33 15.39 7.42 -89.69 -0.67 14.72 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 1.81 7.84 -2.39 -0.02 1.79 16 37 H 0.06 1.87 6.98 -2.39 -0.02 1.86 16 38 H 0.43 7.40 8.50 -92.71 -0.79 6.61 16 39 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.16 1.73 5.87 -2.91 -0.02 1.71 16 41 H 0.10 0.61 7.74 -2.39 -0.02 0.59 16 42 H 0.09 0.68 7.75 -2.39 -0.02 0.66 16 43 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.13 3.04 8.06 -2.91 -0.02 3.01 16 45 H 0.12 3.81 6.50 -2.91 -0.02 3.79 16 Total: -1.00 -65.56 377.10 1.60 -63.97 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: -0.45 Total: 32.56 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 5.26 Total: -16.24 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -3.93 Total: -99.02 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.04 Total: -22.23 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: -2.64 SS G_CDS: -1.27 Total: -3.91 kcal Total: -65.56 1.60 -63.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581437101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.097 kcal (2) G-P(sol) polarization free energy of solvation -65.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds