Wall clock time and date at job start Tue Mar 31 2020 13:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 O 1.42898 * 109.47319 * 300.00438 * 4 2 1 6 6 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 7 7 H 1.09002 * 109.47103 * 179.97438 * 6 2 1 8 8 N 1.46901 * 109.47859 * 59.99693 * 6 2 1 9 9 C 1.46892 * 111.00310 * 154.99802 * 8 6 2 10 10 C 1.53007 * 109.47139 * 180.02562 * 9 8 6 11 11 H 1.09004 * 109.46770 * 55.00284 * 10 9 8 12 12 C 1.47200 * 109.46950 * 295.00498 * 10 9 8 13 13 N 5.85804 * 70.62887 * 264.25120 * 2 1 3 14 14 C 1.52998 * 109.47382 * 175.00119 * 10 9 8 15 15 C 1.50690 * 109.47184 * 185.00181 * 14 10 9 16 16 H 1.08001 * 120.00175 * 0.02562 * 15 14 10 17 17 C 1.37882 * 120.00166 * 180.02562 * 15 14 10 18 18 N 1.31511 * 119.99667 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00301 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47327 * 89.99809 * 19 17 15 21 21 H 1.48494 * 109.47166 * 210.00060 * 19 17 15 22 22 H 1.48502 * 109.46757 * 329.99641 * 19 17 15 23 23 C 1.50708 * 109.47025 * 299.99528 * 6 2 1 24 24 C 1.33378 * 125.20381 * 260.00066 * 23 6 2 25 25 C 1.38428 * 114.91928 * 179.97438 * 24 23 6 26 26 C 1.33387 * 114.92062 * 0.02562 * 25 24 23 27 27 S 1.75882 * 109.59295 * 359.75750 * 26 25 24 28 28 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 33 33 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 34 34 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 36 36 H 0.96701 * 113.99881 * 180.02562 * 5 4 2 37 37 H 1.00905 * 110.99808 * 278.96155 * 8 6 2 38 38 H 1.08993 * 109.47420 * 300.00286 * 9 8 6 39 39 H 1.09005 * 109.46967 * 60.00654 * 9 8 6 40 40 H 1.09004 * 109.46833 * 305.00803 * 14 10 9 41 41 H 1.08998 * 109.46802 * 64.99807 * 14 10 9 42 42 H 0.97005 * 119.99935 * 180.02562 * 18 17 15 43 43 H 1.07997 * 122.54540 * 0.02562 * 24 23 6 44 44 H 1.08003 * 122.53874 * 180.02562 * 25 24 23 45 45 H 1.08005 * 125.20073 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 8 1.5637 -0.0477 2.4160 6 6 2.0401 -0.7211 -1.2492 7 1 3.1301 -0.7207 -1.2494 8 7 1.5504 -0.0287 -2.4487 9 6 2.4341 -0.2744 -3.5961 10 6 1.8931 0.4618 -4.8234 11 1 1.7702 1.5190 -4.5881 12 6 0.5916 -0.1105 -5.2046 13 7 -0.4130 -0.5536 -5.4986 14 6 2.8773 0.3089 -5.9848 15 6 2.4062 1.1341 -7.1544 16 1 1.4960 1.7103 -7.0770 17 6 3.1371 1.1535 -8.3234 18 7 4.2456 0.4522 -8.4175 19 14 2.5535 2.1769 -9.7730 20 1 3.1321 3.5414 -9.6806 21 1 2.9930 1.5376 -11.0392 22 1 1.0712 2.2653 -9.7517 23 6 1.5378 -2.1420 -1.2493 24 6 2.2471 -3.2083 -0.8766 25 6 1.5741 -4.4150 -0.9606 26 6 0.3183 -4.3286 -1.4020 27 16 -0.0756 -2.6470 -1.7345 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2492 36 1 1.8493 -0.4510 3.2472 37 1 0.6010 -0.2977 -2.6593 38 1 3.4360 0.0888 -3.3674 39 1 2.4735 -1.3442 -3.8018 40 1 3.8639 0.6513 -5.6724 41 1 2.9327 -0.7393 -6.2785 42 1 4.7600 0.4661 -9.2398 43 1 3.2689 -3.1357 -0.5343 44 1 2.0311 -5.3552 -0.6892 45 1 -0.3548 -5.1632 -1.5318 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592432329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:41 Heat of formation + Delta-G solvation = -25.708070 kcal Electronic energy + Delta-G solvation = -25319.953691 eV Core-core repulsion = 21848.790094 eV Total energy + Delta-G solvation = -3471.163597 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.53805 -38.57714 -38.16690 -36.83313 -35.69941 -34.70238 -32.86024 -30.78091 -28.41593 -28.13529 -27.09654 -26.01321 -24.37153 -23.57295 -23.44426 -20.23068 -19.88371 -18.57086 -18.36442 -18.21835 -18.14333 -16.84174 -16.56613 -16.13724 -15.93458 -15.63689 -15.26552 -14.92103 -14.70042 -14.47787 -14.14807 -14.04689 -13.91869 -13.59556 -13.52446 -13.50026 -13.35086 -13.08341 -13.01198 -12.73300 -12.71518 -12.70098 -12.48151 -12.35368 -12.09080 -11.82996 -11.67528 -11.57134 -11.42463 -11.31768 -11.12355 -10.75814 -10.54077 -9.63011 -9.52898 -9.32204 -8.18984 -6.26788 0.06085 0.66311 1.08697 1.40350 1.42126 1.51160 1.84032 1.95298 1.97047 2.41712 2.92160 3.16224 3.25902 3.59541 3.70421 3.97132 4.08112 4.14249 4.22730 4.28118 4.40774 4.46695 4.59686 4.63259 4.67986 4.69914 4.74477 4.87654 4.95223 4.96836 5.00058 5.15490 5.16260 5.19035 5.32948 5.36015 5.47845 5.49272 5.56025 5.63424 5.66776 5.79869 5.94901 6.17412 6.21587 6.76039 6.87952 7.00754 7.41643 8.91877 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.003393 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.895312 B = 8249.589914 C = 8991.748413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.042 4.042 3 C -0.123 4.123 4 C 0.090 3.910 5 O -0.584 6.584 6 C 0.168 3.832 7 H 0.114 0.886 8 N -0.673 5.673 9 C 0.078 3.922 10 C 0.018 3.982 11 H 0.125 0.875 12 C 0.245 3.755 13 N -0.500 5.500 14 C 0.041 3.959 15 C -0.539 4.539 16 H 0.053 0.947 17 C 0.013 3.987 18 N -0.922 5.922 19 Si 0.947 3.053 20 H -0.266 1.266 21 H -0.285 1.285 22 H -0.277 1.277 23 C -0.207 4.207 24 C -0.134 4.134 25 C -0.136 4.136 26 C -0.225 4.225 27 S 0.060 5.940 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.393 0.607 37 H 0.333 0.667 38 H 0.114 0.886 39 H 0.029 0.971 40 H 0.039 0.961 41 H -0.002 1.002 42 H 0.264 0.736 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.987 -6.331 23.554 24.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.043 4.043 3 C -0.181 4.181 4 C 0.012 3.988 5 O -0.391 6.391 6 C 0.056 3.944 7 H 0.132 0.868 8 N -0.302 5.302 9 C -0.052 4.052 10 C -0.004 4.004 11 H 0.142 0.858 12 C -0.071 4.071 13 N -0.177 5.177 14 C 0.002 3.998 15 C -0.577 4.577 16 H 0.071 0.929 17 C -0.186 4.186 18 N -0.562 5.562 19 Si 0.773 3.227 20 H -0.191 1.191 21 H -0.210 1.210 22 H -0.202 1.202 23 C -0.326 4.326 24 C -0.164 4.164 25 C -0.166 4.166 26 C -0.361 4.361 27 S 0.323 5.677 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.243 0.757 37 H 0.152 0.848 38 H 0.133 0.867 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.017 0.983 42 H 0.073 0.927 43 H 0.179 0.821 44 H 0.180 0.820 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.642 -5.307 22.163 23.079 hybrid contribution 1.110 -1.637 -0.589 2.064 sum -2.532 -6.944 21.574 22.805 Atomic orbital electron populations 1.21915 0.95111 1.01582 1.01479 1.20398 0.95871 0.96356 0.91646 1.21607 1.00682 0.94125 1.01649 1.22134 0.97656 0.94283 0.84739 1.86423 1.77931 1.57931 1.16847 1.20251 1.00338 0.83452 0.90328 0.86808 1.60692 1.05534 1.60299 1.03712 1.22006 0.98055 0.97616 0.87501 1.19256 0.84127 1.00916 0.96089 0.85764 1.29731 0.94403 0.91879 0.91064 1.81047 1.14157 1.11555 1.10954 1.18959 0.94149 0.95978 0.90699 1.21543 1.08648 1.28390 0.99088 0.92899 1.25683 0.95105 0.96654 1.01170 1.70028 1.16085 1.42021 1.28091 0.85714 0.78378 0.79509 0.79097 1.19110 1.21030 1.20218 1.25615 0.96926 1.01315 1.08761 1.20419 1.02225 0.90908 1.02888 1.20489 0.93820 1.00153 1.02139 1.25944 1.01712 0.99217 1.09198 1.84752 1.14280 1.02359 1.66284 0.92316 0.93348 0.92767 0.92332 0.92054 0.93036 0.92246 0.93636 0.75737 0.84849 0.86743 0.95261 0.94287 0.98331 0.92729 0.82079 0.82039 0.80662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 7.49 71.98 0.54 -2.66 16 2 C -0.04 -0.80 0.45 -52.18 -0.02 -0.83 16 3 C -0.12 -2.47 8.17 71.98 0.59 -1.88 16 4 C 0.09 1.41 5.60 71.98 0.40 1.81 16 5 O -0.58 -9.34 12.31 -148.98 -1.83 -11.17 16 6 C 0.17 3.41 1.72 44.17 0.08 3.49 16 7 H 0.11 2.00 7.78 -2.39 -0.02 1.98 16 8 N -0.67 -16.76 4.99 -495.45 -2.47 -19.23 16 9 C 0.08 2.19 4.91 86.31 0.42 2.61 16 10 C 0.02 0.64 2.42 -12.60 -0.03 0.61 16 11 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 12 C 0.25 9.97 12.98 89.44 1.16 11.13 16 13 N -0.50 -21.97 18.54 20.01 0.37 -21.60 16 14 C 0.04 1.88 4.42 29.84 0.13 2.01 16 15 C -0.54 -28.56 8.60 25.60 0.22 -28.34 16 16 H 0.05 2.79 7.59 -2.91 -0.02 2.77 16 17 C 0.01 0.71 5.46 84.66 0.46 1.17 16 18 N -0.92 -52.82 13.29 21.45 0.28 -52.54 16 19 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 C -0.21 -4.35 3.72 24.59 0.09 -4.26 16 24 C -0.13 -2.39 9.26 21.21 0.20 -2.19 16 25 C -0.14 -2.39 10.18 21.22 0.22 -2.17 16 26 C -0.23 -4.53 11.23 66.72 0.75 -3.78 16 27 S 0.06 1.44 19.59 -56.49 -1.11 0.33 16 28 H 0.06 1.34 7.68 -2.39 -0.02 1.32 16 29 H 0.05 1.18 7.21 -2.39 -0.02 1.17 16 30 H 0.05 1.23 5.41 -2.47 -0.01 1.21 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.37 7.60 -2.39 -0.02 1.36 16 33 H 0.05 1.08 7.68 -2.39 -0.02 1.06 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.05 0.73 6.69 -2.39 -0.02 0.71 16 36 H 0.39 2.78 9.12 -74.06 -0.68 2.11 16 37 H 0.33 9.34 5.65 -89.69 -0.51 8.84 16 38 H 0.11 2.77 8.05 -2.39 -0.02 2.75 16 39 H 0.03 0.88 8.00 -2.38 -0.02 0.86 16 40 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 42 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 43 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 44 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 45 H 0.18 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -65.27 377.84 2.29 -62.97 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -0.18 Total: 18.90 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 5.20 Total: -23.27 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -1.82 Total: -93.36 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -1.83 Total: -11.17 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -1.11 Total: 0.33 kcal Total: -65.27 2.29 -62.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592432329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.265 kcal (2) G-P(sol) polarization free energy of solvation -65.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds