Wall clock time and date at job start Tue Mar 31 2020 13:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46840 * 2 1 4 4 H 1.08997 * 109.47297 * 302.42688 * 3 2 1 5 5 N 1.46504 * 109.46963 * 62.42700 * 3 2 1 6 6 C 1.34780 * 119.99710 * 274.99773 * 5 3 2 7 7 C 1.50701 * 119.99867 * 180.02562 * 6 5 3 8 8 O 1.21284 * 120.00318 * 0.02562 * 6 5 3 9 9 C 1.50698 * 109.47217 * 182.42247 * 3 2 1 10 10 O 1.21286 * 120.00179 * 274.45612 * 9 3 2 11 11 N 1.34775 * 119.99764 * 94.44936 * 9 3 2 12 12 C 1.46504 * 120.00198 * 6.80877 * 11 9 3 13 13 C 1.50695 * 109.47240 * 277.55274 * 12 11 9 14 14 H 1.07998 * 120.00388 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99895 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00215 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99674 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46977 * 90.00058 * 17 15 13 19 19 H 1.48504 * 109.46847 * 209.99618 * 17 15 13 20 20 H 1.48496 * 109.47285 * 330.00028 * 17 15 13 21 21 C 1.40033 * 120.00105 * 186.81081 * 11 9 3 22 22 C 1.38847 * 120.04209 * 186.81335 * 21 11 9 23 23 C 1.38122 * 119.95088 * 179.72655 * 22 21 11 24 24 C 1.38475 * 120.04407 * 0.25747 * 23 22 21 25 25 F 1.35095 * 119.95518 * 180.02562 * 24 23 22 26 26 C 1.38476 * 120.08708 * 359.97304 * 24 23 22 27 27 C 1.38103 * 120.05005 * 0.02562 * 26 24 23 28 28 H 1.09001 * 109.47164 * 60.00624 * 1 2 3 29 29 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47719 * 299.99712 * 1 2 3 31 31 H 1.08992 * 109.47498 * 240.00324 * 2 1 3 32 32 H 1.09001 * 109.47164 * 119.99376 * 2 1 3 33 33 H 0.96994 * 120.00169 * 94.99923 * 5 3 2 34 34 H 1.08996 * 109.47450 * 60.00050 * 7 6 5 35 35 H 1.09004 * 109.47033 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.46819 * 299.99916 * 7 6 5 37 37 H 1.09007 * 109.46545 * 37.54626 * 12 11 9 38 38 H 1.09001 * 109.47190 * 157.54303 * 12 11 9 39 39 H 0.96997 * 120.00293 * 180.02562 * 16 15 13 40 40 H 1.07991 * 120.02739 * 0.02562 * 22 21 11 41 41 H 1.07997 * 119.97582 * 180.27821 * 23 22 21 42 42 H 1.08000 * 119.97322 * 180.02562 * 26 24 23 43 43 H 1.07999 * 120.02687 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6415 1.9688 -0.8674 5 7 1.5999 2.1160 1.2244 6 6 0.3789 2.6842 1.2793 7 6 -0.0736 3.3775 2.5386 8 8 -0.3557 2.6375 0.3154 9 6 3.5457 1.4431 -0.0601 10 8 4.1934 1.3469 0.9609 11 7 4.1727 1.5503 -1.2483 12 6 3.3987 1.8156 -2.4636 13 6 2.8237 0.5240 -2.9850 14 1 3.0158 -0.4021 -2.4636 15 6 2.0522 0.5245 -4.1278 16 7 1.8178 1.6521 -4.7625 17 14 1.3400 -1.0768 -4.7745 18 1 0.0025 -1.3033 -4.1702 19 1 1.2091 -0.9994 -6.2517 20 1 2.2420 -2.2005 -4.4155 21 6 5.5638 1.4079 -1.3213 22 6 6.2263 1.6571 -2.5158 23 6 7.5992 1.5216 -2.5842 24 6 8.3141 1.1324 -1.4640 25 9 9.6569 1.0009 -1.5328 26 6 7.6546 0.8788 -0.2731 27 6 6.2820 1.0131 -0.2005 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5137 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.1872 2.1531 1.9954 34 1 0.6084 4.1963 2.7677 35 1 -1.0797 3.7715 2.3949 36 1 -0.0769 2.6656 3.3640 37 1 2.5884 2.5077 -2.2343 38 1 4.0491 2.2553 -3.2198 39 1 1.2748 1.6525 -5.5662 40 1 5.6692 1.9613 -3.3895 41 1 8.1154 1.7197 -3.5119 42 1 8.2140 0.5758 0.5996 43 1 5.7681 0.8157 0.7287 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601129216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:10 Heat of formation + Delta-G solvation = -79.308551 kcal Electronic energy + Delta-G solvation = -28129.996054 eV Core-core repulsion = 24090.294989 eV Total energy + Delta-G solvation = -4039.701064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.52481 -40.74176 -39.38992 -37.87601 -35.46929 -35.01157 -32.77613 -32.27798 -30.78200 -29.73997 -29.31453 -27.48241 -26.39127 -23.76721 -22.68697 -22.06961 -21.38197 -20.23491 -19.34703 -17.45921 -17.34073 -16.90863 -16.72979 -16.16162 -15.75453 -15.55845 -15.25220 -15.06376 -14.69441 -14.49120 -13.99356 -13.71285 -13.68621 -13.26597 -13.14538 -12.78276 -12.63755 -12.49327 -12.33933 -12.32509 -12.02894 -11.93619 -11.51688 -11.44730 -11.18266 -11.09224 -10.85507 -10.76816 -10.48360 -10.31618 -10.05988 -9.61908 -9.25304 -9.11847 -8.76048 -8.71740 -8.65338 -7.34506 -6.32222 -4.41499 1.44288 1.62290 2.78116 2.87197 3.11155 3.18000 3.25809 3.28540 3.71815 4.09840 4.23698 4.66563 4.76108 4.94865 5.02309 5.16258 5.19405 5.27557 5.32213 5.42261 5.54476 5.64514 5.71027 5.77026 5.84931 5.92456 6.07635 6.22347 6.23005 6.38956 6.44580 6.47724 6.59380 6.60022 6.65952 6.77066 6.86911 6.96994 7.04338 7.47981 7.59728 7.71167 7.79116 7.82880 8.38952 8.45968 8.63679 9.26899 10.74624 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009494 B = 0.005460 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.424855 B = 5127.205888 C = 7310.930072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.123 4.123 3 C 0.134 3.866 4 H 0.128 0.872 5 N -0.718 5.718 6 C 0.507 3.493 7 C -0.172 4.172 8 O -0.533 6.533 9 C 0.520 3.480 10 O -0.544 6.544 11 N -0.527 5.527 12 C 0.223 3.777 13 C -0.545 4.545 14 H 0.066 0.934 15 C 0.074 3.926 16 N -0.883 5.883 17 Si 0.894 3.106 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.164 3.836 22 C -0.121 4.121 23 C -0.131 4.131 24 C 0.052 3.948 25 F -0.151 7.151 26 C -0.135 4.135 27 C -0.146 4.146 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.404 0.596 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.269 0.731 40 H 0.147 0.853 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.569 1.206 10.491 10.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.162 4.162 3 C 0.027 3.973 4 H 0.146 0.854 5 N -0.372 5.372 6 C 0.294 3.706 7 C -0.232 4.232 8 O -0.409 6.409 9 C 0.310 3.690 10 O -0.425 6.425 11 N -0.246 5.246 12 C 0.104 3.896 13 C -0.583 4.583 14 H 0.084 0.916 15 C -0.131 4.131 16 N -0.520 5.520 17 Si 0.721 3.279 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.196 1.196 21 C 0.067 3.933 22 C -0.142 4.142 23 C -0.151 4.151 24 C 0.032 3.968 25 F -0.130 7.130 26 C -0.155 4.155 27 C -0.166 4.166 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.239 0.761 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.164 0.836 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 2.202 1.237 10.117 10.427 hybrid contribution 0.209 -0.859 -0.343 0.948 sum 2.410 0.379 9.774 10.074 Atomic orbital electron populations 1.21727 0.94461 1.00360 1.02781 1.21847 0.97276 0.93754 1.03339 1.20965 0.89850 0.96518 0.90000 0.85417 1.45928 1.17648 1.57228 1.16435 1.20693 0.81246 0.78458 0.90218 1.21903 1.03819 1.01535 0.95912 1.90786 1.53516 1.58749 1.37844 1.20722 0.90433 0.75279 0.82592 1.90308 1.66522 1.50786 1.34842 1.46042 1.04680 1.63487 1.10364 1.19884 0.91264 0.98253 0.80151 1.21283 1.32966 0.93198 1.10868 0.91558 1.24868 0.95507 0.96703 0.96022 1.69891 1.37750 1.25757 1.18611 0.86529 0.79808 0.83251 0.78276 1.20026 1.20921 1.19641 1.18088 0.83312 0.97352 0.94504 1.20966 0.93307 1.01957 0.97930 1.20860 0.94060 1.02438 0.97698 1.17701 0.76832 1.06558 0.95685 1.91429 1.30332 1.94153 1.97119 1.21031 0.95026 1.02897 0.96503 1.22352 0.93010 1.00003 1.01223 0.91276 0.93716 0.93391 0.88549 0.92438 0.76095 0.89591 0.89066 0.89629 0.93518 0.92885 0.92160 0.83574 0.84983 0.85292 0.80252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.47 37.16 0.31 -1.99 16 2 C -0.12 -2.14 5.54 -26.73 -0.15 -2.28 16 3 C 0.13 2.37 1.94 -69.08 -0.13 2.24 16 4 H 0.13 2.65 5.23 -51.93 -0.27 2.38 16 5 N -0.72 -10.47 4.98 -54.93 -0.27 -10.75 16 6 C 0.51 7.37 6.39 -10.98 -0.07 7.30 16 7 C -0.17 -1.61 10.32 36.01 0.37 -1.24 16 8 O -0.53 -10.03 14.21 5.55 0.08 -9.95 16 9 C 0.52 9.69 6.64 -10.99 -0.07 9.62 16 10 O -0.54 -10.02 12.72 5.55 0.07 -9.95 16 11 N -0.53 -10.42 2.71 -114.72 -0.31 -10.73 16 12 C 0.22 4.90 4.58 -5.19 -0.02 4.87 16 13 C -0.55 -12.99 7.88 -34.44 -0.27 -13.26 16 14 H 0.07 1.60 6.56 -52.49 -0.34 1.25 16 15 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 16 N -0.88 -23.14 13.29 55.43 0.74 -22.40 16 17 Si 0.89 19.78 29.54 -169.99 -5.02 14.76 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 C 0.16 3.09 6.49 -83.66 -0.54 2.54 16 22 C -0.12 -2.14 9.29 -39.40 -0.37 -2.51 16 23 C -0.13 -2.08 10.02 -39.54 -0.40 -2.47 16 24 C 0.05 0.84 7.30 -39.41 -0.29 0.55 16 25 F -0.15 -2.37 17.26 2.25 0.04 -2.33 16 26 C -0.14 -2.12 10.02 -39.54 -0.40 -2.52 16 27 C -0.15 -2.56 8.98 -39.40 -0.35 -2.91 16 28 H 0.07 1.35 7.69 -51.93 -0.40 0.95 16 29 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.05 0.77 5.71 -51.93 -0.30 0.48 16 31 H 0.10 1.85 5.75 -51.93 -0.30 1.55 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.40 5.09 7.92 -40.82 -0.32 4.77 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 1.09 6.37 -51.93 -0.33 0.76 16 38 H 0.05 1.20 5.65 -51.93 -0.29 0.90 16 39 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 40 H 0.15 2.63 5.89 -52.49 -0.31 2.32 16 41 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 43 H 0.18 3.22 4.72 -55.18 -0.26 2.96 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -27.45 351.93 -7.07 -34.52 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -5.22 Total: 11.86 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -2.47 Total: -0.33 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.15 Total: -43.88 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: 0.15 Total: -19.90 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.45 -7.07 -34.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601129216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.788 kcal (2) G-P(sol) polarization free energy of solvation -27.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds