Wall clock time and date at job start Tue Mar 31 2020 13:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46920 * 2 1 4 4 H 1.08999 * 109.47101 * 304.86157 * 3 2 1 5 5 N 1.46496 * 109.47330 * 64.86544 * 3 2 1 6 6 C 1.34773 * 120.00228 * 274.99795 * 5 3 2 7 7 C 1.50698 * 119.99892 * 179.97438 * 6 5 3 8 8 O 1.21278 * 119.99790 * 0.02562 * 6 5 3 9 9 C 1.50707 * 109.46698 * 184.86918 * 3 2 1 10 10 O 1.21278 * 119.99408 * 254.17850 * 9 3 2 11 11 N 1.34768 * 120.00005 * 74.18084 * 9 3 2 12 12 C 1.37123 * 120.00361 * 5.18320 * 11 9 3 13 13 H 1.08004 * 120.00027 * 230.30317 * 12 11 9 14 14 C 1.38880 * 120.00040 * 50.29546 * 12 11 9 15 15 N 1.31429 * 120.00224 * 197.30128 * 14 12 11 16 16 Si 1.86800 * 120.00228 * 17.30058 * 14 12 11 17 17 H 1.48507 * 109.46900 * 93.28833 * 16 14 12 18 18 H 1.48494 * 109.47262 * 213.29236 * 16 14 12 19 19 H 1.48503 * 109.46849 * 333.29272 * 16 14 12 20 20 C 1.39841 * 119.99826 * 185.18163 * 11 9 3 21 21 C 1.38983 * 120.04956 * 95.25561 * 20 11 9 22 22 C 1.38042 * 119.94194 * 179.72357 * 21 20 11 23 23 C 1.38542 * 120.05316 * 0.54678 * 22 21 20 24 24 F 1.35101 * 119.94499 * 179.74795 * 23 22 21 25 25 C 1.38498 * 120.10763 * 359.72526 * 23 22 21 26 26 C 1.38082 * 120.04713 * 359.97438 * 25 23 22 27 27 C 1.50703 * 120.02314 * 179.97438 * 26 25 23 28 28 H 1.09007 * 109.46863 * 60.00041 * 1 2 3 29 29 H 1.09002 * 109.47144 * 299.99917 * 1 2 3 30 30 H 1.09000 * 109.47168 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46807 * 119.99894 * 2 1 3 32 32 H 1.09001 * 109.46695 * 239.99796 * 2 1 3 33 33 H 0.97005 * 119.99418 * 94.99380 * 5 3 2 34 34 H 1.08997 * 109.47237 * 89.99948 * 7 6 5 35 35 H 1.08999 * 109.47449 * 210.00123 * 7 6 5 36 36 H 1.09000 * 109.47478 * 330.00315 * 7 6 5 37 37 H 0.97000 * 120.00208 * 180.02562 * 15 14 12 38 38 H 1.07997 * 120.02610 * 359.97438 * 21 20 11 39 39 H 1.08002 * 119.97539 * 180.27781 * 22 21 20 40 40 H 1.07999 * 119.97612 * 180.02562 * 25 23 22 41 41 H 1.08997 * 109.47716 * 273.31350 * 27 26 25 42 42 H 1.09005 * 109.46977 * 33.31700 * 27 26 25 43 43 H 1.09000 * 109.47043 * 153.31054 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6073 1.9809 -0.8432 5 7 1.6497 2.0985 1.2504 6 6 0.4322 2.6655 1.3624 7 6 0.0305 3.3398 2.6489 8 8 -0.3405 2.6323 0.4282 9 6 3.5422 1.4442 -0.1206 10 8 4.2278 1.7025 0.8459 11 7 4.1237 1.1587 -1.3024 12 6 3.3507 0.9712 -2.4194 13 1 3.4945 0.0955 -3.0349 14 6 2.3827 1.9074 -2.7590 15 7 1.4269 1.5879 -3.6027 16 14 2.4390 3.6206 -2.0168 17 1 3.1823 4.5297 -2.9259 18 1 1.0550 4.1266 -1.8337 19 1 3.1248 3.5676 -0.7007 20 6 5.5154 1.0535 -1.3896 21 6 6.1267 -0.1909 -1.2938 22 6 7.5003 -0.2928 -1.3859 23 6 8.2701 0.8455 -1.5623 24 9 9.6146 0.7438 -1.6470 25 6 7.6636 2.0873 -1.6524 26 6 6.2895 2.1935 -1.5670 27 6 5.6302 3.5451 -1.6646 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 2.2676 2.1247 1.9977 34 1 0.3157 4.3911 2.6125 35 1 -1.0487 3.2604 2.7792 36 1 0.5341 2.8555 3.4856 37 1 0.7510 2.2418 -3.8402 38 1 5.5273 -1.0779 -1.1515 39 1 7.9756 -1.2601 -1.3160 40 1 8.2657 2.9732 -1.7903 41 1 5.5960 4.0049 -0.6769 42 1 6.2017 4.1802 -2.3414 43 1 4.6159 3.4279 -2.0461 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602392504.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:49 Heat of formation + Delta-G solvation = -66.990108 kcal Electronic energy + Delta-G solvation = -29060.820740 eV Core-core repulsion = 25021.653843 eV Total energy + Delta-G solvation = -4039.166897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.59895 -40.47124 -39.27665 -37.84591 -35.06865 -34.75710 -32.49023 -32.26575 -32.02787 -29.50990 -29.26016 -27.12953 -26.18511 -24.75613 -22.44315 -21.77666 -21.19616 -20.30395 -19.49614 -18.07636 -17.07402 -16.79620 -16.54668 -16.12639 -15.78004 -15.33424 -15.31332 -15.09108 -14.21091 -13.97074 -13.80004 -13.59223 -13.46263 -13.30705 -13.12802 -12.91754 -12.81326 -12.75317 -12.45361 -12.24068 -12.12974 -11.86694 -11.61166 -11.36708 -11.18337 -11.00984 -10.96288 -10.72808 -10.42943 -10.09815 -9.87599 -9.48621 -9.39138 -8.93981 -8.59983 -8.53703 -8.08548 -7.97388 -6.67673 -4.46895 1.51826 1.58673 2.91194 2.97188 3.07877 3.16650 3.38388 3.49538 3.90131 3.93778 4.22248 4.55367 4.68150 5.06820 5.09495 5.11833 5.32237 5.43920 5.44515 5.47909 5.64573 5.70610 5.74769 5.88538 5.88742 5.99236 6.01201 6.12107 6.17874 6.28817 6.41253 6.43714 6.49696 6.55623 6.57297 6.69306 6.96667 6.99465 7.02898 7.09795 7.45749 7.64513 7.93175 8.24896 8.58161 8.68123 8.95466 9.37001 10.39404 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016901 B = 0.005024 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.327862 B = 5571.978710 C = 5796.385800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 C 0.132 3.868 4 H 0.117 0.883 5 N -0.714 5.714 6 C 0.502 3.498 7 C -0.170 4.170 8 O -0.538 6.538 9 C 0.500 3.500 10 O -0.578 6.578 11 N -0.434 5.434 12 C -0.360 4.360 13 H 0.108 0.892 14 C 0.080 3.920 15 N -0.835 5.835 16 Si 0.849 3.151 17 H -0.276 1.276 18 H -0.273 1.273 19 H -0.253 1.253 20 C 0.164 3.836 21 C -0.085 4.085 22 C -0.153 4.153 23 C 0.083 3.917 24 F -0.148 7.148 25 C -0.150 4.150 26 C -0.050 4.050 27 C -0.119 4.119 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.405 0.595 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.282 0.718 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.543 0.339 7.354 8.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C 0.025 3.975 4 H 0.134 0.866 5 N -0.368 5.368 6 C 0.288 3.712 7 C -0.230 4.230 8 O -0.416 6.416 9 C 0.290 3.710 10 O -0.460 6.460 11 N -0.153 5.153 12 C -0.485 4.485 13 H 0.126 0.874 14 C -0.130 4.130 15 N -0.468 5.468 16 Si 0.676 3.324 17 H -0.203 1.203 18 H -0.199 1.199 19 H -0.178 1.178 20 C 0.074 3.926 21 C -0.105 4.105 22 C -0.172 4.172 23 C 0.064 3.936 24 F -0.127 7.127 25 C -0.169 4.169 26 C -0.052 4.052 27 C -0.176 4.176 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.241 0.759 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.172 0.471 7.017 7.715 hybrid contribution 0.536 0.996 0.375 1.191 sum 3.707 1.467 7.393 8.399 Atomic orbital electron populations 1.21742 0.94938 1.00047 1.02661 1.21666 0.96720 0.94179 1.02875 1.20968 0.92332 0.96171 0.88025 0.86590 1.45996 1.16725 1.57256 1.16787 1.20710 0.81625 0.78573 0.90270 1.21861 1.03908 1.01940 0.95278 1.90758 1.51330 1.58752 1.40727 1.20496 0.89752 0.78329 0.82409 1.90546 1.65061 1.52387 1.38026 1.41127 1.01302 1.65130 1.07756 1.18940 1.15611 1.08989 1.04957 0.87433 1.25509 0.95031 0.97526 0.94924 1.69615 1.10866 1.35332 1.30955 0.87538 0.78493 0.85524 0.80803 1.20283 1.19884 1.17815 1.17856 0.85398 0.91926 0.97437 1.21136 0.93428 0.97587 0.98333 1.20874 0.93847 0.97529 1.04989 1.17581 0.76609 0.94620 1.04827 1.91445 1.30049 1.97059 1.94103 1.20774 0.94449 0.96307 1.05411 1.19918 0.92220 0.95873 0.97153 1.21033 1.01367 0.93106 1.02051 0.91593 0.93424 0.93880 0.92841 0.88612 0.75918 0.89235 0.89062 0.90309 0.90689 0.84911 0.85021 0.85116 0.90931 0.91506 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 8.51 37.16 0.32 -2.26 16 2 C -0.12 -2.27 5.51 -26.73 -0.15 -2.42 16 3 C 0.13 2.83 0.94 -69.08 -0.06 2.76 16 4 H 0.12 2.79 2.27 -51.93 -0.12 2.67 16 5 N -0.71 -13.15 4.97 -54.93 -0.27 -13.42 16 6 C 0.50 8.83 6.50 -10.99 -0.07 8.76 16 7 C -0.17 -2.00 10.30 36.00 0.37 -1.63 16 8 O -0.54 -11.60 14.24 5.56 0.08 -11.52 16 9 C 0.50 11.25 4.24 -10.99 -0.05 11.21 16 10 O -0.58 -13.45 15.84 5.56 0.09 -13.36 16 11 N -0.43 -9.78 1.38 -58.97 -0.08 -9.86 16 12 C -0.36 -8.77 8.04 -14.95 -0.12 -8.89 16 13 H 0.11 2.76 8.06 -52.48 -0.42 2.34 16 14 C 0.08 2.03 4.16 -17.49 -0.07 1.96 16 15 N -0.84 -21.98 13.96 55.49 0.77 -21.21 16 16 Si 0.85 20.31 20.70 -169.99 -3.52 16.79 16 17 H -0.28 -6.43 7.03 56.52 0.40 -6.04 16 18 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.25 -6.00 4.87 56.52 0.28 -5.72 16 20 C 0.16 3.41 4.40 -83.67 -0.37 3.05 16 21 C -0.09 -1.54 9.97 -39.38 -0.39 -1.94 16 22 C -0.15 -2.43 10.02 -39.54 -0.40 -2.83 16 23 C 0.08 1.36 7.30 -39.37 -0.29 1.07 16 24 F -0.15 -2.31 17.27 2.25 0.04 -2.27 16 25 C -0.15 -2.53 9.69 -39.54 -0.38 -2.91 16 26 C -0.05 -0.98 5.90 -104.42 -0.62 -1.59 16 27 C -0.12 -2.30 9.14 36.01 0.33 -1.97 16 28 H 0.06 1.42 7.84 -51.93 -0.41 1.01 16 29 H 0.05 0.87 5.65 -51.93 -0.29 0.57 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 2.01 6.97 -51.93 -0.36 1.65 16 33 H 0.40 6.71 7.72 -40.82 -0.31 6.39 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 39 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 43 H 0.07 1.59 1.90 -51.93 -0.10 1.49 16 LS Contribution 341.79 15.07 5.15 5.15 Total: -1.00 -29.11 341.79 -5.20 -34.31 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -5.51 Total: 13.02 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -1.95 Total: 2.37 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.42 Total: -44.49 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: 0.17 Total: -24.88 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -3.52 Total: 16.79 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.11 -5.20 -34.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602392504.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.683 kcal (2) G-P(sol) polarization free energy of solvation -29.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds