Wall clock time and date at job start Tue Mar 31 2020 13:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46898 * 2 1 4 4 H 1.09002 * 109.46994 * 54.45703 * 3 2 1 5 5 N 1.46501 * 109.46956 * 294.46030 * 3 2 1 6 6 C 1.34781 * 119.99942 * 85.00138 * 5 3 2 7 7 C 1.50700 * 119.99660 * 179.72227 * 6 5 3 8 8 O 1.21277 * 119.99896 * 0.02562 * 6 5 3 9 9 C 1.50697 * 109.46968 * 174.46177 * 3 2 1 10 10 O 1.21282 * 120.00053 * 92.40474 * 9 3 2 11 11 N 1.34775 * 119.99804 * 272.40438 * 9 3 2 12 12 C 1.37124 * 120.00134 * 184.86442 * 11 9 3 13 13 H 1.07996 * 120.00242 * 167.52846 * 12 11 9 14 14 C 1.38887 * 119.99836 * 347.52839 * 12 11 9 15 15 N 1.31425 * 120.00082 * 92.94112 * 14 12 11 16 16 Si 1.86797 * 119.99690 * 272.93773 * 14 12 11 17 17 H 1.48493 * 109.47532 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46881 * 119.99861 * 16 14 12 19 19 H 1.48496 * 109.47240 * 239.99769 * 16 14 12 20 20 C 1.39843 * 120.00076 * 4.86386 * 11 9 3 21 21 C 1.38971 * 120.05088 * 94.30343 * 20 11 9 22 22 C 1.38048 * 119.94606 * 179.97438 * 21 20 11 23 23 C 1.38542 * 120.05190 * 0.02562 * 22 21 20 24 24 F 1.35099 * 119.94465 * 180.02562 * 23 22 21 25 25 C 1.38495 * 120.10628 * 0.02562 * 23 22 21 26 26 C 1.38093 * 120.05227 * 359.74508 * 25 23 22 27 27 C 1.50700 * 120.02854 * 180.27473 * 26 25 23 28 28 H 1.09000 * 109.47396 * 66.88375 * 1 2 3 29 29 H 1.09005 * 109.46608 * 186.88266 * 1 2 3 30 30 H 1.08998 * 109.47109 * 306.87742 * 1 2 3 31 31 H 1.09002 * 109.47055 * 239.99778 * 2 1 3 32 32 H 1.08997 * 109.47160 * 120.00084 * 2 1 3 33 33 H 0.96997 * 119.99808 * 264.99813 * 5 3 2 34 34 H 1.09001 * 109.47159 * 180.27154 * 7 6 5 35 35 H 1.08999 * 109.47614 * 300.27715 * 7 6 5 36 36 H 1.09004 * 109.47396 * 60.27628 * 7 6 5 37 37 H 0.96996 * 119.99911 * 184.91637 * 15 14 12 38 38 H 1.07998 * 120.02807 * 0.02562 * 21 20 11 39 39 H 1.07999 * 119.97300 * 179.97438 * 22 21 20 40 40 H 1.07992 * 119.97805 * 180.02562 * 25 23 22 41 41 H 1.08994 * 109.46992 * 270.22905 * 27 26 25 42 42 H 1.09004 * 109.46728 * 30.23411 * 27 26 25 43 43 H 1.09004 * 109.46631 * 150.22904 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5979 1.9842 0.8362 5 7 1.6635 2.0935 -1.2573 6 6 0.4473 2.6600 -1.3850 7 6 0.0624 3.3351 -2.6762 8 8 -0.3353 2.6312 -0.4589 9 6 3.5407 1.4448 0.1371 10 8 4.2402 1.4559 -0.8536 11 7 4.1056 1.4343 1.3607 12 6 5.4670 1.5370 1.4884 13 1 5.9056 1.7309 2.4560 14 6 6.2819 1.3916 0.3731 15 7 6.6485 2.4494 -0.3153 16 14 6.8569 -0.3074 -0.1483 17 1 6.3091 -1.3237 0.7856 18 1 6.3774 -0.5915 -1.5248 19 1 8.3408 -0.3580 -0.1207 20 6 3.3033 1.3188 2.5003 21 6 3.0727 0.0703 3.0654 22 6 2.2808 -0.0412 4.1907 23 6 1.7156 1.0902 4.7562 24 9 0.9414 0.9786 5.8577 25 6 1.9431 2.3354 4.1941 26 6 2.7384 2.4525 3.0713 27 6 2.9905 3.8084 2.4638 28 1 -0.3634 0.4035 -0.9451 29 1 -0.3633 -1.0203 0.1232 30 1 -0.3633 0.6167 0.8220 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.2896 2.1169 -1.9977 34 1 -0.9479 3.7351 -2.5900 35 1 0.7586 4.1480 -2.8828 36 1 0.0980 2.6106 -3.4898 37 1 7.1577 2.3428 -1.1339 38 1 3.5135 -0.8120 2.6252 39 1 2.1010 -1.0113 4.6300 40 1 1.5018 3.2160 4.6369 41 1 2.2213 4.0229 1.7221 42 1 2.9634 4.5675 3.2456 43 1 3.9695 3.8153 1.9845 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602392506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:52 Heat of formation + Delta-G solvation = -82.635437 kcal Electronic energy + Delta-G solvation = -29117.605852 eV Core-core repulsion = 25077.760523 eV Total energy + Delta-G solvation = -4039.845329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -49.85540 -41.73270 -40.50099 -39.20664 -36.53779 -35.68718 -34.56076 -33.73493 -33.45482 -30.55476 -30.38213 -28.47969 -27.99167 -26.10118 -23.81336 -23.20027 -22.51516 -21.64530 -21.06487 -19.26163 -18.71997 -18.10205 -17.66718 -17.53759 -16.92074 -16.68853 -16.56775 -16.53991 -15.73259 -15.40554 -15.26291 -15.01526 -14.74608 -14.55361 -14.38244 -14.35162 -14.22530 -14.05461 -13.83431 -13.33613 -13.29386 -13.06757 -12.90644 -12.79070 -12.70268 -12.66995 -12.57116 -12.42971 -12.11322 -12.01832 -11.90244 -10.90279 -10.83202 -10.32780 -10.12030 -9.90908 -9.77055 -9.24384 -8.97798 -5.48111 0.09795 0.23695 1.25658 1.47068 1.51767 1.69324 2.02453 2.12506 2.41405 2.53747 2.61732 3.08065 3.24612 3.72396 3.77783 3.86083 3.96728 4.05925 4.08597 4.17098 4.38970 4.45185 4.51670 4.59264 4.63238 4.66839 4.69622 4.78756 4.87281 4.91403 4.97509 5.03964 5.10405 5.12001 5.18953 5.28573 5.30904 5.37399 5.47808 5.61920 5.82629 6.08431 6.64129 6.72725 7.15055 7.29773 7.54350 8.06435 8.21766 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008583 B = 0.007722 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3261.292024 B = 3625.032745 C = 5579.519558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.125 4.125 3 C 0.150 3.850 4 H 0.084 0.916 5 N -0.708 5.708 6 C 0.503 3.497 7 C -0.163 4.163 8 O -0.582 6.582 9 C 0.399 3.601 10 O -0.597 6.597 11 N -0.368 5.368 12 C -0.546 4.546 13 H 0.084 0.916 14 C 0.226 3.774 15 N -0.701 5.701 16 Si 0.827 3.173 17 H -0.269 1.269 18 H -0.289 1.289 19 H -0.276 1.276 20 C 0.118 3.882 21 C -0.093 4.093 22 C -0.140 4.140 23 C 0.091 3.909 24 F -0.140 7.140 25 C -0.143 4.143 26 C -0.067 4.067 27 C -0.107 4.107 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.409 0.591 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.285 0.715 38 H 0.133 0.867 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.705 -0.542 1.166 10.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.164 4.164 3 C 0.041 3.959 4 H 0.102 0.898 5 N -0.361 5.361 6 C 0.292 3.708 7 C -0.222 4.222 8 O -0.462 6.462 9 C 0.193 3.807 10 O -0.484 6.484 11 N -0.082 5.082 12 C -0.656 4.656 13 H 0.101 0.899 14 C -0.009 4.009 15 N -0.320 5.320 16 Si 0.647 3.353 17 H -0.194 1.194 18 H -0.216 1.216 19 H -0.202 1.202 20 C 0.027 3.973 21 C -0.113 4.113 22 C -0.159 4.159 23 C 0.071 3.929 24 F -0.118 7.118 25 C -0.162 4.162 26 C -0.069 4.069 27 C -0.163 4.163 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.246 0.754 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.151 0.849 39 H 0.182 0.818 40 H 0.175 0.825 41 H 0.080 0.920 42 H 0.109 0.891 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.780 -0.297 1.314 10.864 hybrid contribution 1.079 -0.904 -0.530 1.504 sum -9.702 -1.201 0.785 9.807 Atomic orbital electron populations 1.21629 0.93386 1.01320 1.01765 1.21856 0.97675 0.94462 1.02396 1.20513 0.91709 0.95114 0.88557 0.89831 1.45940 1.17056 1.57147 1.15938 1.21556 0.80435 0.77487 0.91349 1.21912 1.04722 1.02286 0.93317 1.90674 1.51486 1.60820 1.43229 1.20146 0.89517 0.87679 0.83358 1.90434 1.63014 1.58213 1.36773 1.40839 1.04695 1.60435 1.02238 1.17775 0.79970 1.72340 0.95564 0.89883 1.24998 0.88500 0.96623 0.90734 1.70788 1.17087 1.35391 1.08766 0.87724 0.77738 0.91532 0.78326 1.19357 1.21560 1.20196 1.18022 0.94890 0.93474 0.90889 1.21309 0.97351 0.96984 0.95635 1.21152 0.99028 0.99126 0.96616 1.17674 0.94755 0.94640 0.85794 1.91478 1.72743 1.96927 1.50677 1.21029 1.00872 0.97557 0.96743 1.20116 0.96256 0.95673 0.94849 1.20684 1.01912 0.92813 1.00904 0.93409 0.91558 0.93269 0.92039 0.91089 0.75400 0.88223 0.88058 0.87409 0.90274 0.84920 0.81843 0.82505 0.91951 0.89139 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.78 8.39 71.98 0.60 -3.18 16 2 C -0.12 -4.31 5.56 30.60 0.17 -4.14 16 3 C 0.15 5.81 1.97 44.24 0.09 5.90 16 4 H 0.08 3.40 5.42 -2.39 -0.01 3.39 16 5 N -0.71 -24.12 5.02 -446.09 -2.24 -26.36 16 6 C 0.50 15.32 6.59 87.66 0.58 15.90 16 7 C -0.16 -3.17 10.32 71.24 0.74 -2.44 16 8 O -0.58 -21.24 14.11 -3.02 -0.04 -21.28 16 9 C 0.40 18.66 6.70 87.66 0.59 19.25 16 10 O -0.60 -31.26 12.41 -3.03 -0.04 -31.30 16 11 N -0.37 -17.32 1.71 -458.88 -0.79 -18.11 16 12 C -0.55 -28.90 9.08 84.02 0.76 -28.14 16 13 H 0.08 4.60 8.06 -2.91 -0.02 4.58 16 14 C 0.23 11.97 2.98 84.91 0.25 12.23 16 15 N -0.70 -37.31 13.30 21.65 0.29 -37.02 16 16 Si 0.83 40.09 28.78 68.60 1.97 42.07 16 17 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 C 0.12 4.71 3.63 38.21 0.14 4.85 16 21 C -0.09 -3.21 8.48 22.40 0.19 -3.02 16 22 C -0.14 -3.96 10.02 22.30 0.22 -3.73 16 23 C 0.09 2.61 7.30 22.40 0.16 2.77 16 24 F -0.14 -3.80 17.26 44.97 0.78 -3.03 16 25 C -0.14 -4.27 9.67 22.30 0.22 -4.05 16 26 C -0.07 -2.41 4.98 -19.73 -0.10 -2.51 16 27 C -0.11 -3.77 9.56 71.24 0.68 -3.09 16 28 H 0.05 1.47 6.26 -2.39 -0.01 1.45 16 29 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.05 1.63 7.48 -2.39 -0.02 1.62 16 31 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.07 2.43 6.42 -2.39 -0.02 2.41 16 33 H 0.41 13.77 7.81 -92.71 -0.72 13.05 16 34 H 0.10 1.76 8.12 -2.39 -0.02 1.74 16 35 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.29 14.05 8.32 -92.71 -0.77 13.28 16 38 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 39 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 40 H 0.16 3.83 8.06 -2.91 -0.02 3.80 16 41 H 0.06 2.21 7.84 -2.39 -0.02 2.19 16 42 H 0.09 2.59 8.09 -2.39 -0.02 2.57 16 43 H 0.06 2.43 7.14 -2.39 -0.02 2.41 16 Total: -1.00 -64.72 356.84 5.54 -59.17 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.32 Total: 29.26 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 5.29 Total: 6.59 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -2.74 Total: -81.49 kcal Atomic # 8 Polarization: -52.50 SS G_CDS: -0.08 Total: -52.58 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.78 Total: -3.03 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.97 Total: 42.07 kcal Total: -64.72 5.54 -59.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602392506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.461 kcal (2) G-P(sol) polarization free energy of solvation -64.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds