Wall clock time and date at job start Tue Mar 31 2020 13:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46915 * 2 1 4 4 H 1.09003 * 109.84013 * 55.83502 * 3 2 1 5 5 C 1.52026 * 109.60383 * 176.51852 * 3 2 1 6 6 C 1.39124 * 123.59057 * 288.28418 * 5 3 2 7 7 C 1.32933 * 115.65301 * 179.57619 * 6 5 3 8 8 S 1.75717 * 109.58712 * 0.10556 * 7 6 5 9 9 C 1.34649 * 122.60382 * 108.21685 * 5 3 2 10 10 C 1.51392 * 125.09753 * 0.47187 * 9 5 3 11 11 C 1.53194 * 109.06907 * 341.81795 * 10 9 5 12 12 N 1.46973 * 109.79983 * 294.99774 * 3 2 1 13 13 C 1.34782 * 120.86738 * 105.54566 * 12 3 2 14 14 O 1.21280 * 120.00045 * 359.72911 * 13 12 3 15 15 C 1.50697 * 119.99745 * 179.71779 * 13 12 3 16 16 N 1.46903 * 109.46959 * 179.97438 * 15 13 12 17 17 C 1.46901 * 110.99880 * 180.02562 * 16 15 13 18 18 H 1.09002 * 109.47401 * 325.00504 * 17 16 15 19 19 C 1.53000 * 109.46769 * 85.00797 * 17 16 15 20 20 C 1.50699 * 109.47121 * 205.00533 * 17 16 15 21 21 H 1.07999 * 120.00019 * 0.02562 * 20 17 16 22 22 C 1.37877 * 120.00129 * 180.02562 * 20 17 16 23 23 N 1.31519 * 119.99723 * 359.97438 * 22 20 17 24 24 Si 1.86803 * 119.99900 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47112 * 60.00201 * 24 22 20 26 26 H 1.48503 * 109.47000 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46939 * 299.99464 * 24 22 20 28 28 H 1.09001 * 109.47040 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47201 * 300.00060 * 1 2 3 30 30 H 1.09001 * 109.46945 * 60.00257 * 1 2 3 31 31 H 1.09003 * 109.47532 * 240.00164 * 2 1 3 32 32 H 1.08998 * 109.47446 * 119.99831 * 2 1 3 33 33 H 1.08001 * 122.17996 * 359.56363 * 6 5 3 34 34 H 1.07993 * 125.20813 * 180.12770 * 7 6 5 35 35 H 1.09008 * 109.53542 * 221.94594 * 10 9 5 36 36 H 1.08998 * 109.60750 * 101.73699 * 10 9 5 37 37 H 1.08993 * 109.62156 * 285.80794 * 11 10 9 38 38 H 1.09006 * 109.61423 * 165.26449 * 11 10 9 39 39 H 1.09003 * 109.46596 * 60.01017 * 15 13 12 40 40 H 1.08991 * 109.47759 * 300.00852 * 15 13 12 41 41 H 1.00904 * 110.99521 * 56.05363 * 16 15 13 42 42 H 1.09004 * 109.46724 * 180.02562 * 19 17 16 43 43 H 1.09001 * 109.47194 * 299.99524 * 19 17 16 44 44 H 1.08992 * 109.47399 * 59.99697 * 19 17 16 45 45 H 0.97003 * 119.99231 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6204 1.9833 0.8484 5 6 3.5577 1.4470 0.0870 6 6 4.2638 1.1080 1.2368 7 6 5.5882 1.1575 1.1344 8 16 6.0352 1.6593 -0.4892 9 6 4.3431 1.7819 -0.9542 10 6 3.8448 2.2008 -2.3210 11 6 2.3871 1.7574 -2.4799 12 7 1.6549 2.1067 -1.2533 13 6 0.6604 3.0161 -1.2768 14 8 0.0671 3.2924 -0.2558 15 6 0.2860 3.6899 -2.5717 16 7 -0.8174 4.6300 -2.3334 17 6 -1.2104 5.3065 -3.5767 18 1 -0.3277 5.4744 -4.1937 19 6 -2.2074 4.4321 -4.3398 20 6 -1.8521 6.6297 -3.2474 21 1 -1.9570 6.9375 -2.2175 22 6 -2.3052 7.4474 -4.2608 23 7 -2.1769 7.0727 -5.5150 24 14 -3.1012 9.0873 -3.8525 25 1 -2.1338 9.9363 -3.1120 26 1 -3.4984 9.7712 -5.1094 27 1 -4.3036 8.8581 -3.0118 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7682 0.8234 2.1532 34 1 6.2832 0.9245 1.9275 35 1 4.4552 1.7297 -3.0917 36 1 3.9087 3.2846 -2.4173 37 1 2.3474 0.6793 -2.6355 38 1 1.9396 2.2695 -3.3318 39 1 -0.0281 2.9375 -3.2951 40 1 1.1476 4.2316 -2.9619 41 1 -0.5741 5.2993 -1.6185 42 1 -2.4987 4.9339 -5.2625 43 1 -1.7433 3.4751 -4.5780 44 1 -3.0901 4.2643 -3.7228 45 1 -2.4961 7.6479 -6.2279 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602864488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:36 Heat of formation + Delta-G solvation = -1.755483 kcal Electronic energy + Delta-G solvation = -25390.030863 eV Core-core repulsion = 21919.905928 eV Total energy + Delta-G solvation = -3470.124935 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.53002 -38.33673 -35.86888 -35.47997 -33.99875 -32.46853 -31.48995 -29.50285 -28.82270 -26.41484 -25.48121 -24.71176 -23.89651 -22.60634 -21.54171 -19.85463 -19.22956 -18.24504 -17.46412 -16.77190 -16.42286 -15.97034 -15.53862 -15.09947 -14.80867 -14.49462 -14.33827 -13.78090 -13.64326 -13.45768 -13.39841 -13.15193 -13.12674 -12.53181 -12.41746 -12.08162 -11.91014 -11.82202 -11.56501 -11.49234 -11.38831 -11.21763 -10.99086 -10.90384 -10.76746 -10.75756 -10.37016 -10.14579 -10.05130 -9.37297 -8.85068 -8.79737 -8.68322 -8.51159 -8.46995 -7.29666 -6.03425 -4.09240 0.77369 1.38834 1.76333 2.43862 2.93275 2.95928 3.33043 3.36637 3.40865 4.38771 4.41103 4.43995 4.71544 4.86016 4.89736 4.94928 5.03851 5.11375 5.15631 5.27057 5.36799 5.39144 5.45571 5.47436 5.54410 5.65622 5.79804 5.83726 5.86954 5.88169 5.89150 6.02539 6.04138 6.26578 6.32910 6.57947 6.82583 7.09787 7.18031 7.40035 7.51991 7.78698 7.86999 8.25453 8.36323 8.45187 8.65392 9.00730 9.56726 11.03063 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019208 B = 0.002894 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.402017 B = 9672.480658 C =10213.211495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.207 3.793 4 H 0.108 0.892 5 C -0.115 4.115 6 C -0.119 4.119 7 C -0.216 4.216 8 S 0.089 5.911 9 C -0.165 4.165 10 C -0.067 4.067 11 C 0.112 3.888 12 N -0.616 5.616 13 C 0.520 3.480 14 O -0.519 6.519 15 C 0.046 3.954 16 N -0.672 5.672 17 C 0.213 3.787 18 H 0.001 0.999 19 C -0.125 4.125 20 C -0.518 4.518 21 H 0.061 0.939 22 C 0.063 3.937 23 N -0.892 5.892 24 Si 0.898 3.102 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.139 0.861 34 H 0.164 0.836 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.341 0.659 42 H 0.082 0.918 43 H 0.003 0.997 44 H 0.033 0.967 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.538 -16.098 8.032 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C 0.101 3.899 4 H 0.126 0.874 5 C -0.128 4.128 6 C -0.150 4.150 7 C -0.351 4.351 8 S 0.355 5.645 9 C -0.283 4.283 10 C -0.107 4.107 11 C -0.013 4.013 12 N -0.351 5.351 13 C 0.309 3.691 14 O -0.392 6.392 15 C -0.087 4.087 16 N -0.305 5.305 17 C 0.106 3.894 18 H 0.019 0.981 19 C -0.183 4.183 20 C -0.557 4.557 21 H 0.079 0.921 22 C -0.139 4.139 23 N -0.530 5.530 24 Si 0.726 3.274 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.201 1.201 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.157 0.843 34 H 0.182 0.818 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.065 0.935 41 H 0.159 0.841 42 H 0.100 0.900 43 H 0.022 0.978 44 H 0.052 0.948 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.079 -16.083 7.617 24.666 hybrid contribution -0.714 1.167 0.762 1.566 sum 16.365 -14.916 8.380 23.676 Atomic orbital electron populations 1.21703 0.94642 1.01182 1.02945 1.21796 0.96825 0.95106 1.02338 1.19900 0.87717 0.93774 0.88524 0.87396 1.19757 0.96430 1.03703 0.92873 1.19919 0.93155 1.02827 0.99088 1.25314 0.99159 1.10276 1.00371 1.84182 1.06254 1.67443 1.06582 1.24672 0.95194 1.08220 1.00167 1.20717 0.96512 1.02250 0.91254 1.21704 0.90451 1.01311 0.87790 1.48193 1.35873 1.42566 1.08490 1.21048 0.78124 0.78082 0.91822 1.90669 1.51192 1.62169 1.35196 1.21836 0.95362 0.98044 0.93482 1.60515 1.35007 1.22499 1.12498 1.19140 0.93810 0.91463 0.84963 0.98098 1.21734 0.98905 0.95797 1.01911 1.21225 1.39610 1.01636 0.93226 0.92094 1.24903 0.95778 0.98317 0.94926 1.69885 1.47062 1.37338 0.98743 0.86558 0.79899 0.83428 0.77526 1.20299 1.21313 1.20118 0.92917 0.92289 0.92397 0.91759 0.91049 0.84297 0.81844 0.89315 0.89496 0.90574 0.88290 0.88975 0.93490 0.84080 0.89969 0.97832 0.94774 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.71 37.16 0.36 -1.33 16 2 C -0.12 -1.23 5.50 -26.73 -0.15 -1.38 16 3 C 0.21 2.46 2.51 -68.17 -0.17 2.29 16 4 H 0.11 1.50 7.16 -51.93 -0.37 1.13 16 5 C -0.11 -1.26 5.14 -104.91 -0.54 -1.80 16 6 C -0.12 -1.14 9.96 -41.09 -0.41 -1.55 16 7 C -0.22 -1.87 11.20 28.90 0.32 -1.54 16 8 S 0.09 0.81 23.31 -107.50 -2.51 -1.69 16 9 C -0.17 -1.72 6.39 -35.24 -0.23 -1.95 16 10 C -0.07 -0.62 6.43 -27.44 -0.18 -0.79 16 11 C 0.11 1.10 6.18 -3.63 -0.02 1.08 16 12 N -0.62 -7.90 2.18 -165.75 -0.36 -8.26 16 13 C 0.52 8.66 7.01 -10.98 -0.08 8.59 16 14 O -0.52 -10.43 15.70 5.56 0.09 -10.35 16 15 C 0.05 0.80 4.32 -4.98 -0.02 0.78 16 16 N -0.67 -14.95 5.93 -109.22 -0.65 -15.60 16 17 C 0.21 5.38 2.60 -68.86 -0.18 5.21 16 18 H 0.00 0.04 7.80 -51.93 -0.41 -0.37 16 19 C -0.13 -3.09 9.19 37.16 0.34 -2.75 16 20 C -0.52 -14.39 8.59 -34.44 -0.30 -14.68 16 21 H 0.06 1.69 7.62 -52.49 -0.40 1.29 16 22 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 23 N -0.89 -25.27 11.32 55.43 0.63 -24.64 16 24 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.78 7.22 -51.93 -0.37 0.41 16 31 H 0.06 0.62 7.27 -51.93 -0.38 0.24 16 32 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 33 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.09 0.63 8.14 -51.92 -0.42 0.20 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.64 7.30 -51.93 -0.38 0.26 16 38 H 0.10 0.93 5.96 -51.93 -0.31 0.62 16 39 H 0.09 1.52 7.03 -51.93 -0.37 1.16 16 40 H 0.05 0.78 7.83 -51.93 -0.41 0.37 16 41 H 0.34 7.83 7.92 -39.29 -0.31 7.52 16 42 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 43 H 0.00 0.06 7.45 -51.93 -0.39 -0.33 16 44 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -31.06 369.22 -10.51 -41.57 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.92 Total: 5.16 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -1.33 Total: -8.18 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.38 Total: -48.50 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.51 Total: -1.69 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.06 -10.51 -41.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.815 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds