Wall clock time and date at job start Tue Mar 31 2020 13:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46906 * 2 1 4 4 H 1.08995 * 109.83818 * 176.78499 * 3 2 1 5 5 C 1.52034 * 109.75189 * 56.20021 * 3 2 1 6 6 C 1.39124 * 123.59446 * 49.04300 * 5 3 2 7 7 C 1.32919 * 115.65092 * 179.53635 * 6 5 3 8 8 S 1.75715 * 109.59282 * 0.11021 * 7 6 5 9 9 C 1.34643 * 122.59749 * 228.92948 * 5 3 2 10 10 C 1.51398 * 125.09988 * 0.52310 * 9 5 3 11 11 C 1.53192 * 109.06372 * 341.76554 * 10 9 5 12 12 N 1.46969 * 109.79900 * 297.62908 * 3 2 1 13 13 C 1.34776 * 120.86909 * 344.65495 * 12 3 2 14 14 O 1.21289 * 119.99933 * 4.46180 * 13 12 3 15 15 C 1.50694 * 120.00279 * 184.45938 * 13 12 3 16 16 N 1.46903 * 109.47427 * 180.02562 * 15 13 12 17 17 C 1.46894 * 110.99973 * 179.97438 * 16 15 13 18 18 H 1.08995 * 109.47593 * 35.00006 * 17 16 15 19 19 C 1.53004 * 109.47043 * 274.99679 * 17 16 15 20 20 C 1.50699 * 109.46983 * 155.00009 * 17 16 15 21 21 H 1.07998 * 120.00312 * 5.41476 * 20 17 16 22 22 C 1.37883 * 119.99929 * 185.41613 * 20 17 16 23 23 N 1.31520 * 119.99862 * 196.54154 * 22 20 17 24 24 Si 1.86795 * 119.99872 * 16.54211 * 22 20 17 25 25 H 1.48503 * 109.46859 * 180.02562 * 24 22 20 26 26 H 1.48498 * 109.47244 * 299.99378 * 24 22 20 27 27 H 1.48497 * 109.47622 * 60.00026 * 24 22 20 28 28 H 1.09000 * 109.46585 * 174.48574 * 1 2 3 29 29 H 1.08997 * 109.46883 * 294.47968 * 1 2 3 30 30 H 1.08997 * 109.47192 * 54.48962 * 1 2 3 31 31 H 1.09004 * 109.47279 * 240.00380 * 2 1 3 32 32 H 1.08999 * 109.47449 * 119.99991 * 2 1 3 33 33 H 1.08000 * 122.17563 * 359.52328 * 6 5 3 34 34 H 1.08004 * 125.20453 * 180.12256 * 7 6 5 35 35 H 1.09003 * 109.53769 * 221.88999 * 10 9 5 36 36 H 1.09001 * 109.53547 * 101.64143 * 10 9 5 37 37 H 1.08999 * 109.62598 * 285.83704 * 11 10 9 38 38 H 1.09000 * 109.61436 * 165.28434 * 11 10 9 39 39 H 1.08996 * 109.47263 * 60.00019 * 15 13 12 40 40 H 1.09007 * 109.47156 * 300.00337 * 15 13 12 41 41 H 1.00895 * 110.99765 * 303.95363 * 16 15 13 42 42 H 1.09001 * 109.47062 * 55.34723 * 19 17 16 43 43 H 1.09000 * 109.46847 * 175.33645 * 19 17 16 44 44 H 1.08990 * 109.47496 * 295.34027 * 19 17 16 45 45 H 0.97000 * 119.99947 * 354.95046 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1284 1.4501 0.0575 5 6 1.4608 2.1923 1.1891 6 6 1.4802 1.7030 2.4913 7 6 0.9377 2.4942 3.4113 8 16 0.3442 3.9624 2.6501 9 6 0.8803 3.4014 1.0713 10 6 0.7136 4.1645 -0.2256 11 6 1.6784 3.5936 -1.2696 12 7 1.6013 2.1256 -1.2251 13 6 1.1356 1.4254 -2.2783 14 8 0.9980 0.2233 -2.1943 15 6 0.7856 2.1360 -3.5603 16 7 0.3043 1.1590 -4.5461 17 6 -0.0476 1.8174 -5.8112 18 1 0.6348 2.6482 -5.9907 19 6 -1.4819 2.3439 -5.7303 20 6 0.0604 0.8256 -6.9407 21 1 0.2749 -0.2116 -6.7299 22 6 -0.1145 1.2425 -8.2433 23 7 -0.3452 0.3600 -9.1908 24 14 -0.0237 3.0606 -8.6622 25 1 -0.2446 3.2445 -10.1192 26 1 -1.0700 3.7955 -7.9070 27 1 1.3149 3.5874 -8.2937 28 1 -0.3632 -1.0229 -0.0988 29 1 -0.3633 0.4258 0.9353 30 1 -0.3633 0.5969 -0.8365 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.9082 0.7427 2.7385 34 1 0.8719 2.2691 4.4656 35 1 0.9377 5.2183 -0.0599 36 1 -0.3116 4.0600 -0.5808 37 1 2.6952 3.9139 -1.0423 38 1 1.3941 3.9451 -2.2614 39 1 1.6703 2.6399 -3.9496 40 1 0.0045 2.8712 -3.3666 41 1 0.9857 0.4299 -4.6949 42 1 -1.5807 2.9975 -4.8636 43 1 -1.7150 2.9039 -6.6360 44 1 -2.1718 1.5057 -5.6338 45 1 -0.3197 -0.5880 -8.9872 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602864490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:42 Heat of formation + Delta-G solvation = 28.097623 kcal Electronic energy + Delta-G solvation = -25811.247823 eV Core-core repulsion = 22342.417415 eV Total energy + Delta-G solvation = -3468.830407 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.91637 -38.42074 -35.97334 -35.71202 -33.83891 -32.46411 -31.59240 -29.67849 -28.86894 -26.58608 -25.43354 -24.47810 -24.17467 -22.37511 -21.66916 -19.67885 -19.38839 -18.07733 -17.77039 -17.28169 -16.70625 -16.02536 -15.92442 -15.09292 -15.01305 -14.61357 -14.19838 -13.93940 -13.65084 -13.53248 -13.37505 -13.22426 -12.82276 -12.69547 -12.42600 -12.20398 -12.08819 -11.88087 -11.83521 -11.60365 -11.37223 -11.28019 -11.05295 -10.98317 -10.80904 -10.55678 -10.43883 -9.97901 -9.66689 -8.94181 -8.86279 -8.80748 -8.62611 -8.49165 -8.24949 -7.53978 -6.47127 -4.08419 0.76522 1.37834 1.75045 2.43978 2.78868 2.89379 3.34358 3.37902 3.57113 4.35661 4.40952 4.46200 4.63851 4.79754 4.89176 4.96475 5.09618 5.10589 5.18507 5.19449 5.27413 5.35335 5.40645 5.48441 5.61635 5.66200 5.70210 5.73235 5.94704 5.95058 5.99197 6.19781 6.26424 6.34978 6.40788 6.61270 6.62632 6.72284 6.76365 6.87456 7.38190 7.46001 7.70219 8.09184 8.36108 8.39630 8.49585 8.94997 9.61012 10.93263 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024363 B = 0.003072 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.025671 B = 9113.688768 C = 9770.064842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.123 4.123 3 C 0.213 3.787 4 H 0.080 0.920 5 C -0.110 4.110 6 C -0.116 4.116 7 C -0.216 4.216 8 S 0.086 5.914 9 C -0.169 4.169 10 C -0.066 4.066 11 C 0.113 3.887 12 N -0.616 5.616 13 C 0.517 3.483 14 O -0.502 6.502 15 C 0.040 3.960 16 N -0.663 5.663 17 C 0.190 3.810 18 H -0.007 1.007 19 C -0.141 4.141 20 C -0.604 4.604 21 H 0.062 0.938 22 C 0.031 3.969 23 N -0.905 5.905 24 Si 1.047 2.953 25 H -0.285 1.285 26 H -0.271 1.271 27 H -0.286 1.286 28 H 0.047 0.953 29 H 0.033 0.967 30 H 0.063 0.937 31 H 0.112 0.888 32 H 0.050 0.950 33 H 0.139 0.861 34 H 0.163 0.837 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.347 0.653 42 H 0.018 0.982 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.381 9.585 24.935 27.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.160 4.160 3 C 0.107 3.893 4 H 0.098 0.902 5 C -0.123 4.123 6 C -0.147 4.147 7 C -0.351 4.351 8 S 0.352 5.648 9 C -0.287 4.287 10 C -0.106 4.106 11 C -0.012 4.012 12 N -0.352 5.352 13 C 0.306 3.694 14 O -0.376 6.376 15 C -0.093 4.093 16 N -0.296 5.296 17 C 0.082 3.918 18 H 0.011 0.989 19 C -0.199 4.199 20 C -0.642 4.642 21 H 0.080 0.920 22 C -0.175 4.175 23 N -0.539 5.539 24 Si 0.876 3.124 25 H -0.211 1.211 26 H -0.198 1.198 27 H -0.212 1.212 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.130 0.870 32 H 0.069 0.931 33 H 0.156 0.844 34 H 0.181 0.819 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.166 0.834 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.728 11.297 24.508 27.243 hybrid contribution 1.665 -2.015 0.799 2.734 sum 5.393 9.282 25.307 27.490 Atomic orbital electron populations 1.21765 0.95058 1.01561 1.00379 1.22149 0.97674 0.93091 1.03105 1.20068 0.97046 0.92178 0.80014 0.90230 1.19803 1.02437 0.94639 0.95382 1.19904 1.02190 1.01220 0.91403 1.25307 1.07972 0.98457 1.03384 1.84164 1.60696 1.20775 0.99166 1.24617 1.06692 0.99343 0.98024 1.20698 1.01396 0.98516 0.90010 1.21714 0.99630 0.79891 0.99917 1.48121 1.65771 1.06601 1.14738 1.20848 0.75982 0.87961 0.84628 1.90658 1.50419 1.14486 1.82071 1.21929 0.99564 0.96411 0.91425 1.60338 1.46629 1.11795 1.10845 1.19446 0.91988 0.93839 0.86557 0.98939 1.22192 0.99701 0.99469 0.98571 1.22091 1.54818 0.95836 0.91479 0.92029 1.25732 0.92716 1.06427 0.92579 1.70841 1.43241 1.03245 1.36597 0.84037 0.76980 0.75188 0.76181 1.21124 1.19781 1.21210 0.93372 0.94779 0.91791 0.87024 0.93144 0.84355 0.81905 0.89362 0.89571 0.90554 0.88393 0.93317 0.89110 0.83397 0.96286 0.92865 0.92931 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 8.42 37.16 0.31 -1.56 16 2 C -0.12 -1.56 4.87 -26.73 -0.13 -1.70 16 3 C 0.21 2.43 3.45 -68.16 -0.23 2.19 16 4 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 5 C -0.11 -1.16 4.22 -104.91 -0.44 -1.61 16 6 C -0.12 -1.10 9.04 -41.09 -0.37 -1.48 16 7 C -0.22 -1.86 11.20 28.89 0.32 -1.53 16 8 S 0.09 0.77 23.31 -107.50 -2.51 -1.74 16 9 C -0.17 -1.71 6.39 -35.24 -0.23 -1.93 16 10 C -0.07 -0.57 6.43 -27.44 -0.18 -0.74 16 11 C 0.11 1.02 6.32 -3.63 -0.02 1.00 16 12 N -0.62 -7.42 2.77 -165.75 -0.46 -7.88 16 13 C 0.52 7.93 6.42 -10.99 -0.07 7.86 16 14 O -0.50 -9.09 10.32 5.55 0.06 -9.03 16 15 C 0.04 0.64 4.33 -4.98 -0.02 0.62 16 16 N -0.66 -14.02 5.93 -109.22 -0.65 -14.67 16 17 C 0.19 4.48 2.18 -68.87 -0.15 4.33 16 18 H -0.01 -0.16 6.48 -51.93 -0.34 -0.49 16 19 C -0.14 -3.15 9.10 37.16 0.34 -2.81 16 20 C -0.60 -16.94 8.84 -34.44 -0.30 -17.25 16 21 H 0.06 1.88 7.92 -52.49 -0.42 1.47 16 22 C 0.03 0.89 5.35 -17.81 -0.10 0.79 16 23 N -0.91 -27.77 13.70 55.43 0.76 -27.01 16 24 Si 1.05 24.64 26.41 -169.99 -4.49 20.15 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.27 -5.84 5.42 56.52 0.31 -5.54 16 27 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.03 0.46 6.99 -51.93 -0.36 0.10 16 30 H 0.06 1.07 5.31 -51.93 -0.28 0.79 16 31 H 0.11 1.69 5.67 -52.80 -0.30 1.39 16 32 H 0.05 0.55 7.51 -51.93 -0.39 0.16 16 33 H 0.14 1.13 7.55 -52.49 -0.40 0.73 16 34 H 0.16 1.02 8.06 -52.48 -0.42 0.60 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.81 5.96 -51.93 -0.31 0.50 16 39 H 0.05 0.73 7.84 -51.93 -0.41 0.32 16 40 H 0.09 1.35 6.95 -51.92 -0.36 0.99 16 41 H 0.35 7.73 7.96 -39.29 -0.31 7.42 16 42 H 0.02 0.35 7.36 -51.93 -0.38 -0.03 16 43 H 0.05 1.19 4.65 -51.93 -0.24 0.95 16 44 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.27 8.26 8.73 -40.82 -0.36 7.90 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -31.64 352.40 -9.94 -41.58 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.70 Total: 7.09 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -1.27 Total: -13.81 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.35 Total: -49.56 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.06 Total: -9.03 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -4.49 Total: 20.15 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.74 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.64 -9.94 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.676 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds