Wall clock time and date at job start Tue Mar 31 2020 14:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47041 * 2 1 4 4 O 1.21287 * 120.00122 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99674 * 179.72636 * 3 2 1 6 6 C 1.46509 * 119.99880 * 180.27457 * 5 3 2 7 7 H 1.09008 * 109.46924 * 324.99649 * 6 5 3 8 8 C 1.53005 * 109.47311 * 84.99333 * 6 5 3 9 9 C 1.50696 * 109.47071 * 204.99885 * 6 5 3 10 10 O 1.21287 * 120.00148 * 333.82021 * 9 6 5 11 11 N 1.34774 * 120.00204 * 153.82727 * 9 6 5 12 12 C 1.46505 * 119.99681 * 8.22842 * 11 9 6 13 13 C 1.50691 * 109.47143 * 88.10592 * 12 11 9 14 14 H 1.08003 * 119.99980 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99922 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00033 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99887 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.47366 * 60.00132 * 17 15 13 19 19 H 1.48504 * 109.47427 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47364 * 300.00140 * 17 15 13 21 21 C 1.40026 * 120.00350 * 188.23314 * 11 9 6 22 22 C 1.38855 * 120.04650 * 187.57998 * 21 11 9 23 23 C 1.38114 * 119.95348 * 179.76819 * 22 21 11 24 24 C 1.38474 * 120.04431 * 0.50534 * 23 22 21 25 25 F 1.35101 * 119.95690 * 179.72581 * 24 23 22 26 26 C 1.38473 * 120.09215 * 359.74787 * 24 23 22 27 27 C 1.38113 * 120.04455 * 359.97438 * 26 24 23 28 28 H 1.08998 * 109.47149 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47520 * 300.00102 * 1 2 3 30 30 H 1.09008 * 109.47070 * 60.00237 * 1 2 3 31 31 H 1.08998 * 109.47175 * 239.99478 * 2 1 3 32 32 H 1.09002 * 109.46751 * 119.99510 * 2 1 3 33 33 H 0.96991 * 120.00353 * 0.26461 * 5 3 2 34 34 H 1.08993 * 109.46843 * 180.19954 * 8 6 5 35 35 H 1.08995 * 109.47142 * 300.20528 * 8 6 5 36 36 H 1.08997 * 109.46376 * 60.19818 * 8 6 5 37 37 H 1.09005 * 109.46789 * 208.10353 * 12 11 9 38 38 H 1.08997 * 109.46900 * 328.10021 * 12 11 9 39 39 H 0.97005 * 119.99736 * 179.97438 * 16 15 13 40 40 H 1.07998 * 120.02170 * 0.02562 * 22 21 11 41 41 H 1.07995 * 119.97675 * 180.22850 * 23 22 21 42 42 H 1.08000 * 119.98237 * 179.97438 * 26 24 23 43 43 H 1.08004 * 120.02638 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3573 1.6670 0.0056 6 6 3.8457 3.0483 0.0117 7 1 3.1753 3.6733 -0.5784 8 6 3.8918 3.5667 1.4505 9 6 5.2293 3.0945 -0.5836 10 8 5.9420 2.1141 -0.5385 11 7 5.6750 4.2253 -1.1660 12 6 4.8923 5.4595 -1.0637 13 6 5.2845 6.2006 0.1884 14 1 6.0408 5.7929 0.8428 15 6 4.6778 7.3993 0.4986 16 7 3.7572 7.8960 -0.2984 17 14 5.1635 8.3177 2.0511 18 1 6.6097 8.6510 1.9972 19 1 4.3702 9.5688 2.1549 20 1 4.8963 7.4631 3.2358 21 6 6.8860 4.2205 -1.8690 22 6 7.4246 5.4128 -2.3341 23 6 8.6216 5.4064 -3.0231 24 6 9.2792 4.2109 -3.2592 25 9 10.4472 4.2060 -3.9382 26 6 8.7412 3.0201 -2.8008 27 6 7.5473 3.0228 -2.1064 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 3.9876 0.9298 0.0057 34 1 4.2518 4.5955 1.4546 35 1 2.8917 3.5299 1.8822 36 1 4.5649 2.9438 2.0395 37 1 5.0877 6.0868 -1.9335 38 1 3.8310 5.2143 -1.0235 39 1 3.3301 8.7391 -0.0799 40 1 6.9100 6.3450 -2.1536 41 1 9.0427 6.3339 -3.3818 42 1 9.2554 2.0887 -2.9863 43 1 7.1277 2.0939 -1.7494 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609522243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:51 Heat of formation + Delta-G solvation = -100.585031 kcal Electronic energy + Delta-G solvation = -27596.681989 eV Core-core repulsion = 23556.058307 eV Total energy + Delta-G solvation = -4040.623682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.78951 -42.15003 -40.69593 -39.28015 -37.04102 -36.14467 -34.64668 -33.80399 -32.11184 -31.86261 -30.28311 -29.17676 -26.21931 -25.44002 -24.90609 -23.78987 -22.89309 -21.33053 -20.71055 -18.88250 -18.77955 -18.63796 -18.25912 -17.56052 -17.06453 -16.69723 -16.55977 -16.50928 -16.29677 -16.01069 -15.47227 -15.19598 -14.77258 -14.63737 -14.53497 -14.29201 -14.08782 -13.88073 -13.66287 -13.56679 -13.30502 -13.11785 -12.97652 -12.87073 -12.72321 -12.60728 -12.51034 -12.21657 -12.04661 -11.99357 -11.88006 -10.94801 -10.89936 -10.67459 -10.50411 -10.20095 -10.04265 -8.81422 -8.23805 -6.38265 0.08011 0.30744 1.36176 1.42459 1.45152 1.50739 1.62010 1.70752 2.32657 2.40493 2.74498 3.07012 3.23898 3.37945 3.77829 3.88710 3.96555 4.02826 4.14360 4.25533 4.30063 4.31447 4.36407 4.47459 4.69914 4.74705 4.82969 4.86417 5.01464 5.02624 5.05995 5.09616 5.19648 5.24850 5.27656 5.30671 5.36870 5.44969 5.58584 5.66021 5.91499 6.06961 6.25972 6.52218 6.68820 6.90623 7.24602 7.31275 8.80788 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008434 B = 0.005095 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3319.055963 B = 5494.579406 C = 8228.760791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.504 3.496 4 O -0.584 6.584 5 N -0.709 5.709 6 C 0.139 3.861 7 H 0.092 0.908 8 C -0.157 4.157 9 C 0.520 3.480 10 O -0.541 6.541 11 N -0.534 5.534 12 C 0.238 3.762 13 C -0.538 4.538 14 H 0.058 0.942 15 C 0.032 3.968 16 N -0.913 5.913 17 Si 0.949 3.051 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.269 1.269 21 C 0.137 3.863 22 C -0.127 4.127 23 C -0.127 4.127 24 C 0.055 3.945 25 F -0.146 7.146 26 C -0.126 4.126 27 C -0.148 4.148 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.417 0.583 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.269 0.731 40 H 0.135 0.865 41 H 0.154 0.846 42 H 0.159 0.841 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.070 -13.558 -1.562 13.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.172 4.172 3 C 0.293 3.707 4 O -0.464 6.464 5 N -0.364 5.364 6 C 0.031 3.969 7 H 0.110 0.890 8 C -0.215 4.215 9 C 0.310 3.690 10 O -0.421 6.421 11 N -0.253 5.253 12 C 0.119 3.881 13 C -0.576 4.576 14 H 0.076 0.924 15 C -0.170 4.170 16 N -0.551 5.551 17 Si 0.774 3.226 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.194 1.194 21 C 0.042 3.958 22 C -0.148 4.148 23 C -0.146 4.146 24 C 0.035 3.965 25 F -0.125 7.125 26 C -0.146 4.146 27 C -0.167 4.167 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.256 0.744 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.152 0.848 41 H 0.172 0.828 42 H 0.176 0.824 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.702 -13.238 -1.554 13.437 hybrid contribution 0.499 1.049 0.587 1.301 sum 2.200 -12.189 -0.967 12.424 Atomic orbital electron populations 1.21547 0.93240 1.02798 1.01857 1.21702 0.98234 0.90355 1.06914 1.21756 0.81121 0.93589 0.74210 1.90722 1.56175 1.48378 1.51119 1.45901 1.07945 1.07227 1.75308 1.20511 0.91652 0.85732 0.99029 0.89033 1.22146 1.02634 1.03756 0.92974 1.20763 0.89188 0.81983 0.77021 1.90327 1.57350 1.36117 1.58322 1.45897 1.19895 1.11990 1.47526 1.19490 0.90803 0.79850 0.97978 1.21328 1.22740 1.05973 1.07590 0.92358 1.25519 0.94440 0.97642 0.99370 1.69985 1.26041 1.20577 1.38496 0.85733 0.78456 0.78110 0.80253 1.19646 1.20943 1.19445 1.18357 0.87368 0.95084 0.94987 1.20940 0.96328 0.97457 1.00038 1.21072 0.95046 0.98080 1.00379 1.17760 0.84330 0.95141 0.99315 1.91451 1.45648 1.97447 1.77929 1.21264 0.96477 0.97843 0.98976 1.22215 0.95461 0.99173 0.99890 0.89126 0.93558 0.93707 0.86320 0.86037 0.74444 0.89501 0.91888 0.91473 0.94452 0.94503 0.92141 0.84753 0.82785 0.82381 0.80763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.20 71.98 0.66 -1.81 16 2 C -0.13 -2.24 6.42 29.85 0.19 -2.05 16 3 C 0.50 14.27 7.79 87.66 0.68 14.96 16 4 O -0.58 -22.30 15.65 -3.05 -0.05 -22.35 16 5 N -0.71 -20.06 5.05 -446.07 -2.25 -22.32 16 6 C 0.14 4.97 2.23 44.24 0.10 5.07 16 7 H 0.09 3.78 5.69 -2.38 -0.01 3.76 16 8 C -0.16 -5.65 9.42 71.98 0.68 -4.98 16 9 C 0.52 19.47 6.74 87.66 0.59 20.06 16 10 O -0.54 -19.56 12.59 -3.05 -0.04 -19.60 16 11 N -0.53 -21.49 2.69 -635.25 -1.71 -23.20 16 12 C 0.24 10.81 4.27 85.63 0.37 11.17 16 13 C -0.54 -26.03 6.89 25.60 0.18 -25.85 16 14 H 0.06 2.87 7.79 -2.91 -0.02 2.85 16 15 C 0.03 1.61 5.46 84.66 0.46 2.07 16 16 N -0.91 -48.44 13.29 21.45 0.28 -48.15 16 17 Si 0.95 40.26 29.54 68.60 2.03 42.29 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 19 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 21 C 0.14 5.19 6.49 38.13 0.25 5.43 16 22 C -0.13 -4.58 9.15 22.39 0.20 -4.37 16 23 C -0.13 -3.88 10.02 22.30 0.22 -3.66 16 24 C 0.05 1.62 7.30 22.38 0.16 1.79 16 25 F -0.15 -4.16 17.27 44.97 0.78 -3.39 16 26 C -0.13 -3.65 10.02 22.30 0.22 -3.43 16 27 C -0.15 -4.95 8.95 22.39 0.20 -4.75 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 30 H 0.04 0.96 8.10 -2.38 -0.02 0.94 16 31 H 0.12 1.44 8.14 -2.39 -0.02 1.43 16 32 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.42 9.78 7.80 -92.72 -0.72 9.06 16 34 H 0.09 3.61 5.26 -2.39 -0.01 3.60 16 35 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.04 1.78 6.44 -2.38 -0.02 1.76 16 38 H 0.04 1.79 5.86 -2.39 -0.01 1.77 16 39 H 0.27 13.73 8.31 -92.70 -0.77 12.96 16 40 H 0.13 5.24 6.30 -2.91 -0.02 5.22 16 41 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 42 H 0.16 3.60 8.06 -2.91 -0.02 3.57 16 43 H 0.18 5.92 4.79 -38.18 -0.18 5.73 16 Total: -1.00 -59.43 358.99 4.38 -55.06 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: 0.17 Total: 32.00 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 5.17 Total: 9.66 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -3.68 Total: -93.67 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -0.09 Total: -41.94 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.78 Total: -3.39 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -59.43 4.38 -55.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609522243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.530 kcal (2) G-P(sol) polarization free energy of solvation -59.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds