Wall clock time and date at job start Tue Mar 31 2020 13:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46745 * 2 1 4 4 N 1.46893 * 109.47229 * 119.99801 * 2 1 3 5 5 C 1.46902 * 111.00151 * 56.04795 * 4 2 1 6 6 C 1.46896 * 110.99998 * 179.97438 * 4 2 1 7 7 C 1.53007 * 109.47051 * 169.99950 * 6 4 2 8 8 N 1.46498 * 109.46662 * 180.02562 * 7 6 4 9 9 C 1.34783 * 119.99450 * 180.02562 * 8 7 6 10 10 O 1.21606 * 120.00135 * 0.02562 * 9 8 7 11 11 C 1.47433 * 119.99777 * 179.97438 * 9 8 7 12 12 C 1.39678 * 120.21285 * 359.97438 * 11 9 8 13 13 C 1.37809 * 119.93418 * 180.02562 * 12 11 9 14 14 C 1.38660 * 120.38295 * 0.02562 * 13 12 11 15 15 C 1.37910 * 120.43889 * 0.02562 * 14 13 12 16 16 C 1.39110 * 120.04977 * 359.97438 * 15 14 13 17 17 S 1.76195 * 120.19106 * 180.02562 * 16 15 14 18 18 C 1.76205 * 99.99901 * 6.85682 * 17 16 15 19 19 H 1.08005 * 119.99976 * 5.65159 * 18 17 16 20 20 C 1.38804 * 120.00248 * 185.65626 * 18 17 16 21 21 N 1.31558 * 119.99610 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00279 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46991 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47417 * 119.99708 * 22 20 18 25 25 H 1.48506 * 109.47217 * 240.00232 * 22 20 18 26 26 H 1.09003 * 109.46970 * 300.00216 * 1 2 3 27 27 H 1.08999 * 109.47537 * 60.00137 * 1 2 3 28 28 H 1.08994 * 109.47033 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47005 * 240.00173 * 2 1 3 30 30 H 1.09000 * 109.46927 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47290 * 299.99556 * 3 2 1 32 32 H 1.09003 * 109.47563 * 60.00147 * 3 2 1 33 33 H 1.08999 * 109.47587 * 183.95370 * 5 4 2 34 34 H 1.09008 * 109.46926 * 303.95227 * 5 4 2 35 35 H 1.08999 * 109.46915 * 63.94881 * 5 4 2 36 36 H 1.09005 * 109.47074 * 50.00337 * 6 4 2 37 37 H 1.08995 * 109.47421 * 290.00400 * 6 4 2 38 38 H 1.09000 * 109.47129 * 60.00660 * 7 6 4 39 39 H 1.09003 * 109.47146 * 300.00273 * 7 6 4 40 40 H 0.97003 * 120.00826 * 359.97438 * 8 7 6 41 41 H 1.07994 * 120.03669 * 0.27820 * 12 11 9 42 42 H 1.08006 * 119.80802 * 179.97438 * 13 12 11 43 43 H 1.08007 * 119.77539 * 180.02562 * 14 13 12 44 44 H 1.07997 * 119.97290 * 179.97438 * 15 14 13 45 45 H 0.96997 * 119.99773 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.4731 -2.0535 1.2816 6 6 3.4881 -0.7125 1.2330 7 6 3.9602 -1.2124 2.5999 8 7 5.4247 -1.2318 2.6336 9 6 6.0677 -1.6402 3.7454 10 8 5.4323 -1.9930 4.7204 11 6 7.5415 -1.6604 3.7792 12 6 8.2758 -1.2577 2.6613 13 6 9.6532 -1.2793 2.6989 14 6 10.3170 -1.6995 3.8414 15 6 9.6076 -2.1015 4.9537 16 6 8.2167 -2.0869 4.9356 17 16 7.3067 -2.5990 6.3547 18 6 8.6250 -2.8055 7.5055 19 1 9.6311 -2.5253 7.2300 20 6 8.3706 -3.3282 8.7659 21 7 7.1451 -3.6690 9.1015 22 14 9.7681 -3.5464 9.9860 23 1 11.0396 -3.0904 9.3691 24 1 9.4921 -2.7426 11.2038 25 1 9.8838 -4.9802 10.3549 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.7949 -2.5187 2.2133 34 1 0.3842 -2.0099 1.2545 35 1 1.8343 -2.6416 0.4380 36 1 3.8693 0.2944 1.0629 37 1 3.8603 -1.3782 0.4543 38 1 3.5791 -2.2193 2.7700 39 1 3.5880 -0.5466 3.3786 40 1 5.9315 -0.9515 1.8555 41 1 7.7646 -0.9258 1.7697 42 1 10.2189 -0.9678 1.8332 43 1 11.3968 -1.7121 3.8603 44 1 10.1323 -2.4278 5.8394 45 1 6.9674 -4.0346 9.9822 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726197864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:10 Heat of formation + Delta-G solvation = -2.788277 kcal Electronic energy + Delta-G solvation = -24201.600507 eV Core-core repulsion = 20731.430787 eV Total energy + Delta-G solvation = -3470.169720 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.57057 -38.65368 -37.39665 -34.72665 -32.74056 -32.42815 -30.76186 -30.26034 -29.21892 -27.21149 -25.81369 -25.45738 -23.31952 -22.12187 -21.61938 -20.44424 -19.88027 -18.17495 -17.15585 -16.69472 -15.88910 -15.74894 -15.18305 -15.13328 -14.92223 -14.76570 -14.31766 -14.00240 -13.83232 -13.66386 -13.24658 -12.98692 -12.88078 -12.67687 -12.50659 -12.20365 -12.06069 -11.97482 -11.69077 -11.57945 -11.30476 -11.20730 -11.18853 -11.13754 -10.89842 -10.80807 -10.31299 -9.79469 -9.63841 -9.49340 -8.75288 -8.70881 -8.58858 -8.31868 -8.04380 -6.52111 -6.44932 -4.15344 1.54850 2.02760 3.11585 3.12882 3.21280 3.24211 3.44558 3.54637 3.93813 4.08385 4.50432 4.58735 4.64844 4.76616 4.95835 4.96736 5.02885 5.14115 5.17905 5.29938 5.32151 5.34915 5.40435 5.41529 5.52221 5.52455 5.58580 5.60867 5.78018 5.87363 5.92083 5.94348 6.00242 6.10864 6.14025 6.39820 6.60498 6.69726 6.82939 6.84655 6.88234 7.04216 7.14403 7.46077 7.60232 7.92026 8.17822 8.81911 9.01378 10.58385 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017723 B = 0.002759 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.488732 B =10147.074742 C =11458.311508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 C -0.149 4.149 4 N -0.533 5.533 5 C 0.014 3.986 6 C 0.041 3.959 7 C 0.127 3.873 8 N -0.739 5.739 9 C 0.553 3.447 10 O -0.507 6.507 11 C -0.177 4.177 12 C -0.061 4.061 13 C -0.187 4.187 14 C -0.077 4.077 15 C -0.153 4.153 16 C -0.057 4.057 17 S 0.185 5.815 18 C -0.595 4.595 19 H 0.091 0.909 20 C 0.083 3.917 21 N -0.858 5.858 22 Si 0.919 3.081 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.025 0.975 36 H 0.084 0.916 37 H 0.038 0.962 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.393 0.607 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.139 0.861 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.807 6.665 -19.136 21.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 C -0.206 4.206 4 N -0.258 5.258 5 C -0.134 4.134 6 C -0.088 4.088 7 C 0.002 3.998 8 N -0.394 5.394 9 C 0.342 3.658 10 O -0.384 6.384 11 C -0.192 4.192 12 C -0.081 4.081 13 C -0.212 4.212 14 C -0.099 4.099 15 C -0.178 4.178 16 C -0.177 4.177 17 S 0.449 5.551 18 C -0.742 4.742 19 H 0.109 0.891 20 C -0.128 4.128 21 N -0.490 5.490 22 Si 0.745 3.255 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.227 0.773 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.156 0.844 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.952 6.283 -17.298 20.465 hybrid contribution 2.820 -0.300 -0.657 2.911 sum -6.132 5.983 -17.954 19.893 Atomic orbital electron populations 1.21923 0.94201 1.02114 1.02315 1.21619 0.95774 0.95119 0.90665 1.21926 1.01168 0.95202 1.02328 1.61924 1.07216 1.17542 1.39166 1.22568 1.00827 0.88495 1.01479 1.22345 0.88023 1.01746 0.96641 1.21157 0.80076 1.01832 0.96702 1.45753 1.06531 1.70415 1.16739 1.18286 0.87654 0.77530 0.82358 1.90789 1.67581 1.46537 1.33517 1.19110 0.91520 1.12773 0.95820 1.20884 0.94235 0.97156 0.95867 1.20630 0.93958 1.07969 0.98647 1.21084 0.98952 0.96725 0.93168 1.21438 0.93176 1.03611 0.99590 1.23093 0.97429 0.97412 0.99753 1.84783 1.06878 1.68178 0.95225 1.24102 0.98617 1.49532 1.01934 0.89100 1.25105 0.96648 0.93331 0.97728 1.69989 1.19309 1.38288 1.21438 0.86098 0.81117 0.78256 0.80050 1.19161 1.20225 1.20247 0.91561 0.92257 0.92394 0.94351 0.92405 0.92263 0.91505 0.90560 0.90814 0.95649 0.89729 0.94395 0.91670 0.90738 0.77266 0.87235 0.87108 0.87033 0.84364 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.84 37.16 0.33 -0.69 16 2 C 0.08 0.61 2.67 -67.72 -0.18 0.43 16 3 C -0.15 -1.08 8.99 37.16 0.33 -0.74 16 4 N -0.53 -5.13 4.63 -234.89 -1.09 -6.22 16 5 C 0.01 0.13 8.95 60.07 0.54 0.67 16 6 C 0.04 0.40 4.89 -3.82 -0.02 0.38 16 7 C 0.13 1.65 5.60 -4.04 -0.02 1.63 16 8 N -0.74 -10.60 5.51 -61.38 -0.34 -10.94 16 9 C 0.55 10.83 7.75 -12.51 -0.10 10.74 16 10 O -0.51 -12.06 13.77 5.27 0.07 -11.99 16 11 C -0.18 -3.52 5.89 -104.75 -0.62 -4.13 16 12 C -0.06 -0.97 9.53 -39.20 -0.37 -1.34 16 13 C -0.19 -2.88 10.02 -39.58 -0.40 -3.28 16 14 C -0.08 -1.32 10.03 -39.55 -0.40 -1.72 16 15 C -0.15 -3.22 9.22 -39.38 -0.36 -3.58 16 16 C -0.06 -1.31 6.14 -38.39 -0.24 -1.55 16 17 S 0.18 5.00 18.56 -107.50 -2.00 3.01 16 18 C -0.60 -16.51 9.00 30.94 0.28 -16.23 16 19 H 0.09 2.39 4.98 -52.48 -0.26 2.13 16 20 C 0.08 2.28 5.49 -17.46 -0.10 2.19 16 21 N -0.86 -24.87 13.22 55.49 0.73 -24.13 16 22 Si 0.92 20.78 29.55 -169.99 -5.02 15.76 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.39 6.26 -51.93 -0.32 0.06 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.42 6.20 -51.93 -0.32 0.09 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.77 6.47 -51.93 -0.34 0.43 16 34 H 0.07 0.59 6.01 -51.92 -0.31 0.28 16 35 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.08 0.76 5.83 -51.93 -0.30 0.45 16 37 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 38 H 0.07 0.92 6.55 -51.93 -0.34 0.58 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.39 4.40 6.50 -40.82 -0.27 4.14 16 41 H 0.11 1.29 6.40 -52.49 -0.34 0.95 16 42 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 43 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 44 H 0.14 3.03 5.04 -52.49 -0.26 2.77 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -32.05 369.36 -9.82 -41.87 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.43 Total: 4.31 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -1.32 Total: -17.23 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: -0.69 Total: -41.29 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.07 Total: -11.99 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -2.00 Total: 3.01 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.05 -9.82 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726197864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.081 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds