Wall clock time and date at job start Tue Mar 31 2020 14:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47175 * 2 1 4 4 O 1.42904 * 109.47390 * 120.00371 * 2 1 3 5 5 C 1.35973 * 116.99924 * 151.26210 * 4 2 1 6 6 C 1.38721 * 119.97872 * 185.83413 * 5 4 2 7 7 C 1.38098 * 120.01063 * 179.73069 * 6 5 4 8 8 C 1.38846 * 119.98514 * 0.54224 * 7 6 5 9 9 N 1.40097 * 120.01689 * 179.70251 * 8 7 6 10 10 C 1.34779 * 119.99885 * 139.42240 * 9 8 7 11 11 S 1.71201 * 119.99973 * 354.29791 * 10 9 8 12 12 N 1.34779 * 120.00052 * 174.29624 * 10 9 8 13 13 C 1.46499 * 120.00035 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47045 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.46853 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.46696 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00005 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99499 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99453 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00391 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.46985 * 89.99563 * 20 18 16 22 22 H 1.48500 * 109.47228 * 209.99820 * 20 18 16 23 23 H 1.48505 * 109.46952 * 329.99733 * 20 18 16 24 24 C 1.38852 * 119.96899 * 359.73274 * 8 7 6 25 25 C 1.38094 * 119.98450 * 359.97438 * 24 8 7 26 26 H 1.09004 * 109.47080 * 59.99595 * 1 2 3 27 27 H 1.09008 * 109.47430 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47097 * 299.99731 * 1 2 3 29 29 H 1.09003 * 109.46829 * 240.00167 * 2 1 3 30 30 H 1.09003 * 109.47106 * 60.00337 * 3 2 1 31 31 H 1.09004 * 109.47038 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47257 * 300.00125 * 3 2 1 33 33 H 1.08002 * 119.99603 * 0.02562 * 6 5 4 34 34 H 1.07995 * 120.00931 * 180.25436 * 7 6 5 35 35 H 0.96995 * 120.00133 * 319.42829 * 9 8 7 36 36 H 0.96999 * 120.00170 * 0.02562 * 12 10 9 37 37 H 1.08999 * 109.47243 * 300.00296 * 13 12 10 38 38 H 1.09000 * 109.47332 * 60.00116 * 13 12 10 39 39 H 1.09002 * 109.47209 * 299.99988 * 14 13 12 40 40 H 1.08999 * 109.46753 * 60.00570 * 14 13 12 41 41 H 1.08999 * 109.47506 * 300.00598 * 15 14 13 42 42 H 1.08999 * 109.46807 * 60.00809 * 15 14 13 43 43 H 0.97006 * 119.99852 * 179.97438 * 19 18 16 44 44 H 1.08003 * 120.00827 * 179.97438 * 24 8 7 45 45 H 1.07994 * 119.99520 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2137 -1.2921 1.0728 6 6 3.6803 -2.0654 2.1257 7 6 4.9039 -2.6982 2.0287 8 6 5.6721 -2.5512 0.8816 9 7 6.9163 -3.1879 0.7850 10 6 7.2908 -3.7630 -0.3750 11 16 6.1909 -3.8442 -1.6844 12 7 8.5313 -4.2740 -0.5042 13 6 8.9385 -4.8986 -1.7652 14 6 10.3820 -5.3920 -1.6472 15 6 10.8070 -6.0448 -2.9640 16 6 12.2286 -6.5314 -2.8475 17 1 12.7741 -6.3896 -1.9262 18 6 12.8324 -7.1585 -3.9168 19 7 14.0731 -7.5827 -3.8152 20 14 11.8886 -7.4045 -5.5099 21 1 12.1006 -6.2323 -6.3968 22 1 12.3743 -8.6329 -6.1884 23 1 10.4406 -7.5436 -5.2110 24 6 5.2070 -1.7724 -0.1696 25 6 3.9805 -1.1451 -0.0738 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 3.0844 -2.1764 3.0196 34 1 5.2652 -3.3036 2.8468 35 1 7.5082 -3.2149 1.5530 36 1 9.1544 -4.2283 0.2378 37 1 8.2825 -5.7417 -1.9817 38 1 8.8694 -4.1682 -2.5714 39 1 11.0378 -4.5486 -1.4310 40 1 10.4515 -6.1223 -0.8410 41 1 10.1512 -6.8883 -3.1798 42 1 10.7375 -5.3148 -3.7705 43 1 14.4978 -8.0242 -4.5673 44 1 5.8043 -1.6573 -1.0621 45 1 3.6188 -0.5390 -0.8911 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728799513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:07 Heat of formation + Delta-G solvation = -4.813803 kcal Electronic energy + Delta-G solvation = -23443.923291 eV Core-core repulsion = 19973.665737 eV Total energy + Delta-G solvation = -3470.257554 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72567 -39.52581 -37.82971 -35.65392 -33.77945 -33.22931 -31.68565 -31.23975 -29.02087 -27.70523 -27.14407 -24.50370 -23.74782 -23.01437 -22.24131 -21.15688 -20.47652 -18.78565 -18.38270 -18.06548 -16.76841 -16.27752 -15.94100 -15.67398 -15.43033 -14.99793 -14.93452 -14.46108 -14.11550 -14.06404 -13.67854 -13.56896 -13.11142 -12.83835 -12.76367 -12.62560 -12.57990 -12.43522 -12.08610 -11.88830 -11.54884 -11.26289 -11.18502 -11.10351 -10.92816 -10.85162 -10.18622 -10.02182 -9.79557 -9.58507 -9.31067 -9.25968 -8.60644 -8.20702 -7.77375 -7.10561 -6.11624 -4.11356 0.83467 1.19301 1.56275 1.90724 2.47741 2.90830 3.29130 3.36879 3.38783 3.41550 3.57786 4.37255 4.40439 4.50163 4.58870 4.71532 4.72456 4.97538 5.09677 5.13244 5.16080 5.22386 5.27693 5.29995 5.32040 5.38318 5.48180 5.61564 5.67503 5.74027 5.80822 5.85150 5.95084 6.06033 6.22242 6.26573 6.28598 6.47297 6.51980 6.64043 6.84279 7.12950 7.15754 7.22417 7.26291 7.68813 8.42920 8.90815 9.50168 11.01339 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029101 B = 0.001976 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.920554 B =14166.062484 C =14780.887313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.074 3.926 3 C -0.178 4.178 4 O -0.312 6.312 5 C 0.133 3.867 6 C -0.151 4.151 7 C -0.086 4.086 8 C 0.094 3.906 9 N -0.636 5.636 10 C 0.553 3.447 11 S -0.630 6.630 12 N -0.667 5.667 13 C 0.115 3.885 14 C -0.115 4.115 15 C -0.009 4.009 16 C -0.526 4.526 17 H 0.071 0.929 18 C 0.068 3.932 19 N -0.902 5.902 20 Si 0.879 3.121 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.263 1.263 24 C -0.029 4.029 25 C -0.202 4.202 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.405 0.595 36 H 0.399 0.601 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.022 0.978 42 H 0.017 0.983 43 H 0.264 0.736 44 H 0.148 0.852 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.689 16.964 13.535 32.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.018 3.982 3 C -0.236 4.236 4 O -0.226 6.226 5 C 0.087 3.913 6 C -0.171 4.171 7 C -0.107 4.107 8 C 0.001 3.999 9 N -0.263 5.263 10 C 0.194 3.806 11 S -0.500 6.500 12 N -0.292 5.292 13 C -0.007 4.007 14 C -0.154 4.154 15 C -0.047 4.047 16 C -0.563 4.563 17 H 0.089 0.911 18 C -0.134 4.134 19 N -0.540 5.540 20 Si 0.706 3.294 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.187 1.187 24 C -0.052 4.052 25 C -0.222 4.222 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.243 0.757 36 H 0.235 0.765 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.040 0.960 42 H 0.036 0.964 43 H 0.074 0.926 44 H 0.165 0.835 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -24.334 16.732 12.535 32.082 hybrid contribution 0.959 -0.239 0.307 1.035 sum -23.375 16.493 12.842 31.358 Atomic orbital electron populations 1.21872 0.92607 1.03219 1.02967 1.22478 0.95329 0.92705 0.87711 1.22352 1.02269 0.95872 1.03061 1.86115 1.32572 1.65907 1.37970 1.19022 0.85199 0.92765 0.94277 1.20063 0.96862 1.01059 0.99076 1.20634 0.93153 0.99396 0.97510 1.17252 0.86601 0.98736 0.97338 1.42149 1.18537 1.54049 1.11589 1.22392 0.87850 0.80516 0.89846 1.93425 1.48026 1.77961 1.30627 1.45443 1.09975 1.55222 1.18562 1.22216 0.97642 0.98459 0.82380 1.21788 0.91345 1.00391 1.01846 1.19479 0.97571 0.95733 0.91878 1.21051 0.96104 1.38109 1.01084 0.91083 1.25021 0.94737 0.94822 0.98800 1.69909 1.12349 1.39832 1.31912 0.86781 0.81047 0.77891 0.83666 1.20151 1.21315 1.18715 1.21222 0.95973 0.90501 0.97496 1.21082 0.96630 1.06043 0.98473 0.90539 0.91608 0.91554 0.90411 0.91513 0.91743 0.90982 0.84963 0.85281 0.75737 0.76480 0.89508 0.89481 0.92023 0.92018 0.96013 0.96450 0.92619 0.83451 0.84976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.56 37.16 0.36 -0.49 16 2 C 0.07 0.54 2.83 -26.73 -0.08 0.46 16 3 C -0.18 -1.07 9.27 37.16 0.34 -0.73 16 4 O -0.31 -3.01 9.79 -19.65 -0.19 -3.20 16 5 C 0.13 1.36 6.64 -39.23 -0.26 1.10 16 6 C -0.15 -1.41 9.98 -39.45 -0.39 -1.81 16 7 C -0.09 -0.77 9.96 -39.41 -0.39 -1.17 16 8 C 0.09 1.00 5.95 -83.63 -0.50 0.50 16 9 N -0.64 -6.12 5.34 -11.37 -0.06 -6.18 16 10 C 0.55 7.08 7.75 -86.91 -0.67 6.41 16 11 S -0.63 -10.77 24.96 -107.50 -2.68 -13.45 16 12 N -0.67 -7.81 5.56 -62.03 -0.34 -8.16 16 13 C 0.12 1.72 5.13 -4.04 -0.02 1.70 16 14 C -0.12 -1.98 5.27 -26.73 -0.14 -2.12 16 15 C -0.01 -0.19 4.04 -27.88 -0.11 -0.31 16 16 C -0.53 -14.42 9.66 -34.44 -0.33 -14.75 16 17 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 18 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 19 N -0.90 -27.29 13.96 55.43 0.77 -26.51 16 20 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 24 C -0.03 -0.35 7.85 -39.41 -0.31 -0.65 16 25 C -0.20 -2.11 8.42 -39.46 -0.33 -2.44 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.57 6.09 -51.93 -0.32 0.26 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.43 7.30 -51.93 -0.38 0.05 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.40 2.47 8.84 -40.82 -0.36 2.11 16 36 H 0.40 3.46 8.49 -40.82 -0.35 3.12 16 37 H 0.09 1.41 7.99 -51.93 -0.41 1.00 16 38 H 0.09 1.39 7.99 -51.93 -0.42 0.97 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 42 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.15 1.96 6.14 -46.75 -0.29 1.67 16 45 H 0.13 1.19 5.55 -52.49 -0.29 0.90 16 LS Contribution 378.17 15.07 5.70 5.70 Total: -1.00 -33.80 378.17 -11.39 -45.18 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.97 Total: 2.33 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -2.94 Total: -12.45 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.37 Total: -40.86 kcal Atomic # 8 Polarization: -3.01 SS G_CDS: -0.19 Total: -3.20 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: -10.77 SS G_CDS: -2.68 Total: -13.45 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.80 -11.39 -45.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728799513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.369 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds