Wall clock time and date at job start Tue Mar 31 2020 13:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47364 * 2 1 4 4 C 1.52999 * 109.47291 * 239.99997 * 2 1 3 5 5 S 1.81399 * 109.47058 * 120.00154 * 2 1 3 6 6 C 1.81400 * 103.00238 * 60.00153 * 5 2 1 7 7 C 1.52996 * 109.47038 * 180.02562 * 6 5 2 8 8 C 1.53000 * 109.46736 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46937 * 180.02562 * 8 7 6 10 10 O 1.21276 * 119.99987 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99661 * 180.02562 * 9 8 7 12 12 C 1.39475 * 119.99474 * 185.07745 * 11 9 8 13 13 C 1.38590 * 119.57551 * 185.35966 * 12 11 9 14 14 C 1.40809 * 118.79490 * 179.70049 * 13 12 11 15 15 C 1.41544 * 120.99971 * 180.25620 * 14 13 12 16 16 H 1.07994 * 120.00299 * 153.75178 * 15 14 13 17 17 C 1.40038 * 119.99830 * 333.74897 * 15 14 13 18 18 N 1.30743 * 119.99889 * 350.16752 * 17 15 14 19 19 Si 1.86803 * 120.00022 * 170.15984 * 17 15 14 20 20 H 1.48495 * 109.46990 * 60.00258 * 19 17 15 21 21 H 1.48501 * 109.47119 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46833 * 300.00245 * 19 17 15 23 23 C 1.41172 * 118.00859 * 0.27806 * 14 13 12 24 24 C 1.37594 * 119.01359 * 359.97438 * 23 14 13 25 25 N 1.32082 * 121.11005 * 0.02562 * 24 23 14 26 26 H 1.08997 * 109.47484 * 300.00285 * 1 2 3 27 27 H 1.09009 * 109.47074 * 59.99878 * 1 2 3 28 28 H 1.09003 * 109.47362 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47624 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47299 * 300.00219 * 3 2 1 31 31 H 1.09004 * 109.46936 * 59.99857 * 3 2 1 32 32 H 1.09001 * 109.47254 * 299.99869 * 4 2 1 33 33 H 1.08999 * 109.47150 * 60.00523 * 4 2 1 34 34 H 1.08998 * 109.47562 * 180.02562 * 4 2 1 35 35 H 1.08993 * 109.47371 * 59.99866 * 6 5 2 36 36 H 1.09008 * 109.46542 * 299.99845 * 6 5 2 37 37 H 1.09000 * 109.47120 * 60.00009 * 7 6 5 38 38 H 1.08998 * 109.47260 * 299.99419 * 7 6 5 39 39 H 1.08993 * 109.47339 * 59.99868 * 8 7 6 40 40 H 1.09000 * 109.47474 * 299.99796 * 8 7 6 41 41 H 0.96997 * 119.99949 * 5.07118 * 11 9 8 42 42 H 1.08007 * 120.60588 * 359.97438 * 13 12 11 43 43 H 0.97004 * 119.99893 * 179.97438 * 18 17 15 44 44 H 1.07996 * 120.49563 * 179.97438 * 23 14 13 45 45 H 1.07997 * 119.44539 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 16 2.1345 -0.8552 1.4811 6 6 1.4374 -2.5205 1.3040 7 6 1.8624 -3.3806 2.4958 8 6 1.2738 -4.7850 2.3467 9 6 1.6919 -5.6321 3.5210 10 8 2.3920 -5.1592 4.3911 11 7 1.2885 -6.9155 3.6036 12 6 1.5858 -7.6680 4.7397 13 6 1.2657 -9.0161 4.7701 14 6 1.5790 -9.7617 5.9229 15 6 1.2780 -11.1425 6.0021 16 1 1.8591 -11.7858 6.6461 17 6 0.2266 -11.6744 5.2453 18 7 -0.5962 -10.8757 4.6174 19 14 -0.0001 -13.5252 5.1329 20 1 -0.2199 -14.0805 6.4925 21 1 -1.1755 -13.8289 4.2776 22 1 1.2153 -14.1375 4.5387 23 6 2.2019 -9.0907 6.9974 24 6 2.4760 -7.7477 6.8766 25 7 2.1659 -7.0840 5.7776 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1299 -0.7217 -1.2490 35 1 1.8030 -2.9712 0.3815 36 1 0.3497 -2.4573 1.2714 37 1 1.4963 -2.9296 3.4182 38 1 2.9500 -3.4437 2.5289 39 1 1.6394 -5.2361 1.4244 40 1 0.1862 -4.7216 2.3139 41 1 0.7915 -7.3156 2.8731 42 1 0.7888 -9.4874 3.9234 43 1 -1.3243 -11.2442 4.0929 44 1 2.4594 -9.6234 7.9008 45 1 2.9520 -7.2274 7.6946 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754085639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:52 Heat of formation + Delta-G solvation = -27.001894 kcal Electronic energy + Delta-G solvation = -23640.890352 eV Core-core repulsion = 20169.670650 eV Total energy + Delta-G solvation = -3471.219702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.61511 -37.87361 -36.62335 -34.65861 -34.13577 -33.70787 -30.55221 -29.30577 -28.07743 -27.76382 -27.09995 -25.99932 -22.81441 -21.94346 -21.19586 -20.65443 -19.58420 -17.66108 -17.05061 -16.30028 -15.91768 -15.69272 -15.35039 -15.05604 -14.62898 -14.57878 -14.37110 -14.20193 -13.97681 -13.53066 -13.04232 -12.94526 -12.82974 -12.63303 -12.57547 -12.51963 -12.13979 -11.89453 -11.77154 -11.55801 -11.46011 -11.42835 -11.21308 -10.96524 -10.91897 -10.84587 -10.30480 -10.16209 -9.91425 -9.73636 -9.40826 -9.33177 -7.99700 -7.83880 -7.73506 -7.04441 -6.75626 -4.64207 1.43648 2.37595 2.55018 2.79678 2.99514 3.02676 3.19443 3.47020 3.66098 3.84091 4.34223 4.35006 4.67053 4.68394 4.74341 4.75293 4.96237 5.13391 5.17710 5.25946 5.32330 5.34556 5.35112 5.40673 5.41540 5.43670 5.57523 5.66859 5.67266 5.81190 5.82073 6.01821 6.03028 6.23747 6.58170 6.64942 6.79638 6.94616 7.11891 7.38073 7.46401 7.77580 7.94529 8.21367 8.42219 8.69453 8.74281 8.89852 9.68082 10.08330 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026512 B = 0.002023 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.870848 B =13837.781044 C =14636.851840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.038 4.038 3 C -0.127 4.127 4 C -0.144 4.144 5 S -0.250 6.250 6 C -0.085 4.085 7 C -0.087 4.087 8 C -0.135 4.135 9 C 0.497 3.503 10 O -0.482 6.482 11 N -0.660 5.660 12 C 0.334 3.666 13 C -0.239 4.239 14 C 0.141 3.859 15 C -0.454 4.454 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.796 5.796 19 Si 0.915 3.085 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.282 4.282 24 C 0.117 3.883 25 N -0.553 5.553 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.408 0.592 42 H 0.133 0.867 43 H 0.281 0.719 44 H 0.102 0.898 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 15.294 -13.731 20.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C -0.186 4.186 4 C -0.203 4.203 5 S -0.022 6.022 6 C -0.233 4.233 7 C -0.126 4.126 8 C -0.177 4.177 9 C 0.282 3.718 10 O -0.352 6.352 11 N -0.306 5.306 12 C 0.110 3.890 13 C -0.264 4.264 14 C 0.133 3.867 15 C -0.486 4.486 16 H 0.099 0.901 17 C -0.143 4.143 18 N -0.422 5.422 19 Si 0.740 3.260 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.188 1.188 23 C -0.306 4.306 24 C -0.037 4.037 25 N -0.272 5.272 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.242 0.758 42 H 0.150 0.850 43 H 0.092 0.908 44 H 0.120 0.880 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.144 17.041 -12.509 21.140 hybrid contribution -1.580 -2.565 -1.382 3.314 sum -1.436 14.476 -13.891 20.114 Atomic orbital electron populations 1.22131 0.92832 1.02498 1.02817 1.22676 0.98298 0.98479 0.95310 1.21648 1.01797 0.92537 1.02583 1.22130 1.02124 1.00084 0.95923 1.87034 1.70824 1.11280 1.33019 1.23464 1.02984 0.94334 1.02511 1.21028 1.02417 0.92313 0.96852 1.21656 1.02633 0.95434 0.97987 1.20603 0.81153 0.82183 0.87893 1.90782 1.33774 1.71155 1.39513 1.43488 1.56252 1.11915 1.18977 1.18231 0.95873 0.88276 0.86655 1.21673 1.11830 0.91424 1.01517 1.17594 0.86986 0.93199 0.88966 1.19548 1.13365 0.93234 1.22437 0.90103 1.25952 0.94520 1.00673 0.93149 1.69735 1.11796 1.37049 1.23657 0.86249 0.78582 0.81862 0.79340 1.18900 1.20276 1.18794 1.21929 1.13125 0.95529 0.99999 1.21765 0.96618 0.91489 0.93864 1.67190 1.20233 1.39041 1.00762 0.91344 0.91843 0.92381 0.91679 0.91319 0.91674 0.92392 0.91844 0.91357 0.90065 0.90047 0.90105 0.90171 0.89129 0.89012 0.75761 0.84950 0.90783 0.87961 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.32 37.15 0.31 -0.69 16 2 C -0.04 -0.29 0.95 -90.63 -0.09 -0.38 16 3 C -0.13 -0.87 8.48 37.16 0.32 -0.56 16 4 C -0.14 -0.99 8.32 37.16 0.31 -0.68 16 5 S -0.25 -2.68 20.65 -107.50 -2.22 -4.90 16 6 C -0.08 -0.81 5.05 37.16 0.19 -0.63 16 7 C -0.09 -1.07 4.51 -26.73 -0.12 -1.19 16 8 C -0.13 -1.62 5.70 -27.88 -0.16 -1.78 16 9 C 0.50 9.09 7.78 -10.98 -0.09 9.00 16 10 O -0.48 -10.99 14.28 5.56 0.08 -10.91 16 11 N -0.66 -12.72 5.39 -11.49 -0.06 -12.78 16 12 C 0.33 8.12 7.40 -154.70 -1.15 6.97 16 13 C -0.24 -6.05 8.61 -38.48 -0.33 -6.39 16 14 C 0.14 3.71 5.60 -106.55 -0.60 3.12 16 15 C -0.45 -11.66 9.14 -37.65 -0.34 -12.01 16 16 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 17 C 0.08 1.80 5.31 -17.34 -0.09 1.71 16 18 N -0.80 -19.44 10.70 55.55 0.59 -18.85 16 19 Si 0.92 17.88 29.57 -169.99 -5.03 12.86 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 23 C -0.28 -6.96 9.90 -38.70 -0.38 -7.35 16 24 C 0.12 2.84 11.15 -17.68 -0.20 2.65 16 25 N -0.55 -14.24 7.89 -12.52 -0.10 -14.34 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.06 0.41 6.68 -51.93 -0.35 0.06 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.40 6.68 -51.93 -0.35 0.05 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.69 6.99 -51.93 -0.36 0.32 16 36 H 0.08 0.70 6.99 -51.92 -0.36 0.34 16 37 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 38 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.41 6.35 8.70 -40.82 -0.36 6.00 16 42 H 0.13 3.32 6.11 -52.48 -0.32 3.00 16 43 H 0.28 6.23 8.29 -40.82 -0.34 5.89 16 44 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 45 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -31.44 379.93 -10.56 -42.00 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -7.13 Total: 9.39 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -2.42 Total: -8.19 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.43 Total: -45.98 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.86 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.22 Total: -4.90 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.44 -10.56 -42.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754085639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.998 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds