Wall clock time and date at job start Tue Mar 31 2020 13:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 120.00093 * 2 1 4 4 N 1.46501 * 109.47287 * 124.99708 * 3 2 1 5 5 C 1.34771 * 120.00155 * 89.99974 * 4 3 2 6 6 O 1.21599 * 119.99952 * 354.96212 * 5 4 3 7 7 N 1.34771 * 120.00125 * 174.95782 * 5 4 3 8 8 C 1.40137 * 120.00513 * 184.93038 * 7 5 4 9 9 C 1.38699 * 120.07108 * 18.40173 * 8 7 5 10 10 C 1.38191 * 120.02044 * 179.97438 * 9 8 7 11 11 C 1.38541 * 120.17645 * 0.02562 * 10 9 8 12 12 F 1.35098 * 119.92519 * 179.97438 * 11 10 9 13 13 C 1.38349 * 120.15215 * 0.03713 * 11 10 9 14 14 C 1.38736 * 119.97336 * 359.93719 * 13 11 10 15 15 O 1.35782 * 120.08631 * 180.31648 * 14 13 11 16 16 C 1.34807 * 116.99942 * 354.43649 * 15 14 13 17 17 H 1.08005 * 119.99941 * 5.09972 * 16 15 14 18 18 C 1.38636 * 120.00264 * 185.09760 * 16 15 14 19 19 N 1.31573 * 119.99557 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00217 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46975 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47123 * 120.00066 * 20 18 16 23 23 H 1.48502 * 109.47100 * 240.00226 * 20 18 16 24 24 C 1.46504 * 119.99769 * 269.99526 * 4 3 2 25 25 C 1.52997 * 109.47141 * 305.04836 * 24 4 3 26 26 C 1.53005 * 109.46973 * 65.04481 * 24 4 3 27 27 H 1.08000 * 119.99679 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99422 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.00095 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46963 * 4.99425 * 3 2 1 31 31 H 1.08999 * 109.46699 * 244.99510 * 3 2 1 32 32 H 0.97003 * 119.99802 * 4.93407 * 7 5 4 33 33 H 1.08000 * 119.98631 * 359.97438 * 9 8 7 34 34 H 1.07999 * 119.91382 * 180.02562 * 10 9 8 35 35 H 1.07994 * 120.01168 * 180.02562 * 13 11 10 36 36 H 0.97005 * 119.99923 * 179.97438 * 19 18 16 37 37 H 1.08993 * 109.47066 * 185.04378 * 24 4 3 38 38 H 1.09003 * 109.47513 * 59.99737 * 25 24 4 39 39 H 1.09001 * 109.47030 * 179.97438 * 25 24 4 40 40 H 1.09002 * 109.47250 * 299.99402 * 25 24 4 41 41 H 1.09001 * 109.46669 * 59.99787 * 26 24 4 42 42 H 1.08992 * 109.47024 * 179.97438 * 26 24 4 43 43 H 1.09003 * 109.47076 * 299.99893 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 4.2497 0.8662 0.9825 6 8 4.5833 0.3403 -0.0619 7 7 5.1359 0.9835 1.9911 8 6 6.4687 0.5940 1.8017 9 6 6.9762 0.4539 0.5185 10 6 8.2907 0.0703 0.3329 11 6 9.1053 -0.1759 1.4262 12 9 10.3895 -0.5512 1.2390 13 6 8.6062 -0.0397 2.7093 14 6 7.2875 0.3456 2.9029 15 8 6.7972 0.4863 4.1612 16 6 7.6065 0.1260 5.1773 17 1 8.6238 -0.1763 4.9763 18 6 7.1332 0.1434 6.4802 19 7 5.8939 0.5111 6.7250 20 14 8.2550 -0.3553 7.8882 21 1 9.5894 -0.7240 7.3512 22 1 8.3980 0.7811 8.8334 23 1 7.6691 -1.5199 8.5993 24 6 2.5588 1.8651 2.4248 25 6 2.0193 3.2843 2.2360 26 6 1.4568 0.9729 2.9997 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6214 1.4025 -0.9314 32 1 4.8512 1.3374 2.8482 33 1 6.3437 0.6447 -0.3359 34 1 8.6842 -0.0378 -0.6670 35 1 9.2433 -0.2318 3.5599 36 1 5.5625 0.5229 7.6366 37 1 3.4045 1.8864 3.1120 38 1 1.1735 3.2631 1.5487 39 1 1.6953 3.6809 3.1982 40 1 2.8044 3.9200 1.8265 41 1 1.8412 -0.0382 3.1342 42 1 1.1335 1.3693 3.9621 43 1 0.6110 0.9517 2.3124 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761656129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:41 Heat of formation + Delta-G solvation = -37.226072 kcal Electronic energy + Delta-G solvation = -27682.772084 eV Core-core repulsion = 23644.895852 eV Total energy + Delta-G solvation = -4037.876231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.19547 -40.61881 -38.99792 -37.18173 -36.07311 -34.60860 -33.50257 -32.38439 -31.42596 -29.36297 -28.45918 -27.25827 -25.98021 -25.44811 -22.61827 -21.93398 -21.51158 -20.29953 -19.08450 -18.43493 -18.31891 -17.40455 -16.73733 -15.77786 -15.44298 -15.20065 -15.11705 -14.95746 -14.66271 -14.29403 -14.12070 -14.03241 -13.75753 -13.52427 -13.38296 -13.27024 -13.02002 -12.32587 -12.28096 -12.21931 -12.07178 -11.90646 -11.66676 -11.55339 -11.37154 -11.17446 -11.01671 -10.89259 -10.72640 -10.51100 -9.84593 -9.77841 -9.50682 -9.27044 -8.95157 -8.65491 -7.82654 -6.97980 -6.59539 -4.16526 1.90131 2.06782 2.15973 2.94303 3.05945 3.08796 3.13804 3.40393 3.84906 4.04319 4.41720 4.73879 4.84745 4.87250 4.99404 5.00310 5.09240 5.13881 5.16446 5.36892 5.55748 5.58439 5.61801 5.68980 5.76830 5.78440 5.84664 5.90090 6.03910 6.08928 6.21457 6.26098 6.44215 6.54480 6.64244 6.68255 6.80825 6.94580 6.98371 7.10924 7.16756 7.27428 7.71734 7.85304 8.20125 8.80345 8.87430 9.48465 10.58025 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010435 B = 0.004572 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.704325 B = 6122.838705 C = 8286.887872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C 0.158 3.842 4 N -0.619 5.619 5 C 0.706 3.294 6 O -0.580 6.580 7 N -0.662 5.662 8 C 0.085 3.915 9 C -0.075 4.075 10 C -0.222 4.222 11 C 0.120 3.880 12 F -0.153 7.153 13 C -0.254 4.254 14 C 0.151 3.849 15 O -0.175 6.175 16 C -0.390 4.390 17 H 0.094 0.906 18 C 0.043 3.957 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C 0.129 3.871 25 C -0.161 4.161 26 C -0.163 4.163 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.413 0.587 33 H 0.162 0.838 34 H 0.122 0.878 35 H 0.142 0.858 36 H 0.270 0.730 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.180 3.794 -7.852 12.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.173 4.173 3 C 0.035 3.965 4 N -0.356 5.356 5 C 0.408 3.592 6 O -0.459 6.459 7 N -0.310 5.310 8 C -0.011 4.011 9 C -0.096 4.096 10 C -0.242 4.242 11 C 0.100 3.900 12 F -0.132 7.132 13 C -0.275 4.275 14 C 0.095 3.905 15 O -0.079 6.079 16 C -0.466 4.466 17 H 0.112 0.888 18 C -0.162 4.162 19 N -0.496 5.496 20 Si 0.766 3.234 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.201 1.201 24 C 0.025 3.975 25 C -0.219 4.219 26 C -0.221 4.221 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.128 0.872 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.253 0.747 33 H 0.179 0.821 34 H 0.140 0.860 35 H 0.160 0.840 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.304 3.564 -8.278 12.953 hybrid contribution 0.691 -0.334 1.327 1.533 sum -8.613 3.230 -6.951 11.530 Atomic orbital electron populations 1.23763 0.95670 1.01662 1.02077 1.23424 0.95985 0.99649 0.98269 1.20388 0.91490 0.94919 0.89694 1.47227 1.10483 1.65794 1.12062 1.15819 0.80300 0.79175 0.83891 1.90762 1.77570 1.49245 1.28360 1.42537 1.07338 1.65611 1.15499 1.16802 0.82753 1.09497 0.91999 1.21207 0.94325 0.97953 0.96100 1.20545 0.94586 1.11833 0.97241 1.17480 0.78329 1.00245 0.93975 1.91402 1.36327 1.89245 1.96202 1.20808 0.96702 1.13781 0.96248 1.18649 0.91027 0.94862 0.85930 1.83881 1.41645 1.72768 1.09568 1.21372 0.95114 1.46302 0.83770 0.88824 1.25255 0.96801 0.96534 0.97609 1.70011 1.14540 1.43760 1.21335 0.85628 0.79392 0.78491 0.79889 1.18974 1.20065 1.20084 1.21164 0.98442 0.93497 0.84421 1.22155 1.01473 0.95677 1.02616 1.22213 0.98539 1.00317 1.01031 0.88565 0.88710 0.87153 0.90044 0.89037 0.74749 0.82116 0.86027 0.84004 0.91969 0.89059 0.92185 0.91086 0.92021 0.92074 0.91437 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 13.26 29.01 0.38 -1.38 16 2 C -0.15 -1.74 8.63 -36.03 -0.31 -2.05 16 3 C 0.16 1.81 5.37 -5.19 -0.03 1.78 16 4 N -0.62 -8.51 2.39 -173.17 -0.41 -8.92 16 5 C 0.71 12.45 8.13 -86.93 -0.71 11.75 16 6 O -0.58 -11.41 12.80 5.28 0.07 -11.34 16 7 N -0.66 -12.65 5.25 -14.07 -0.07 -12.72 16 8 C 0.08 1.80 6.54 -83.44 -0.55 1.26 16 9 C -0.08 -1.50 8.81 -39.43 -0.35 -1.84 16 10 C -0.22 -4.24 10.02 -39.49 -0.40 -4.63 16 11 C 0.12 2.45 7.29 -39.43 -0.29 2.16 16 12 F -0.15 -2.99 17.26 2.25 0.04 -2.95 16 13 C -0.25 -5.64 9.14 -39.36 -0.36 -6.00 16 14 C 0.15 3.52 6.66 -38.94 -0.26 3.26 16 15 O -0.18 -4.56 9.10 0.01 0.00 -4.56 16 16 C -0.39 -10.27 9.49 30.88 0.29 -9.98 16 17 H 0.09 2.34 5.21 -52.48 -0.27 2.07 16 18 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -23.27 13.67 55.48 0.76 -22.51 16 20 Si 0.94 19.71 29.55 -169.99 -5.02 14.68 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 24 C 0.13 1.57 3.25 -67.93 -0.22 1.35 16 25 C -0.16 -1.55 9.07 37.16 0.34 -1.22 16 26 C -0.16 -1.87 8.78 37.16 0.33 -1.54 16 27 H 0.10 0.81 8.06 -52.49 -0.42 0.39 16 28 H 0.09 0.72 7.84 -52.49 -0.41 0.31 16 29 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.08 0.73 5.83 -51.93 -0.30 0.43 16 31 H 0.09 1.13 7.50 -51.93 -0.39 0.74 16 32 H 0.41 7.79 5.61 -40.82 -0.23 7.56 16 33 H 0.16 3.15 5.30 -52.50 -0.28 2.87 16 34 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 35 H 0.14 3.14 5.64 -52.49 -0.30 2.84 16 36 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.09 1.29 5.46 -51.93 -0.28 1.00 16 38 H 0.06 0.49 6.52 -51.93 -0.34 0.15 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.64 6.10 -51.93 -0.32 0.32 16 LS Contribution 357.32 15.07 5.38 5.38 Total: -1.00 -29.07 357.32 -6.69 -35.76 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -5.21 Total: 13.26 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -2.22 Total: -6.08 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.27 Total: -44.15 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.07 Total: -15.91 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.07 -6.69 -35.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761656129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.463 kcal (2) G-P(sol) polarization free energy of solvation -29.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds