Wall clock time and date at job start Tue Mar 31 2020 14:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.88607 * 2 1 4 4 C 1.55156 * 111.00409 * 236.07665 * 2 1 3 5 5 C 1.54315 * 102.86140 * 206.22625 * 4 2 1 6 6 H 1.09005 * 109.76775 * 141.88576 * 5 4 2 7 7 C 1.52999 * 109.98798 * 263.04722 * 5 4 2 8 8 N 1.47019 * 107.27490 * 22.53063 * 5 4 2 9 9 C 1.34777 * 125.64387 * 180.96281 * 8 5 4 10 10 O 1.21592 * 120.00331 * 359.72099 * 9 8 5 11 11 N 1.34779 * 119.99951 * 179.43829 * 9 8 5 12 12 C 1.40129 * 120.00392 * 174.60879 * 11 9 8 13 13 C 1.38701 * 120.07508 * 335.23198 * 12 11 9 14 14 C 1.38191 * 120.02220 * 180.02562 * 13 12 11 15 15 C 1.38549 * 120.17602 * 0.02562 * 14 13 12 16 16 F 1.35095 * 119.92291 * 179.97438 * 15 14 13 17 17 C 1.38340 * 120.14825 * 359.96220 * 15 14 13 18 18 C 1.38743 * 119.97949 * 359.76568 * 17 15 14 19 19 O 1.35772 * 120.08725 * 180.25461 * 18 17 15 20 20 C 1.34815 * 117.00236 * 5.19620 * 19 18 17 21 21 H 1.07991 * 119.99753 * 354.97870 * 20 19 18 22 22 C 1.38631 * 119.99969 * 174.97619 * 20 19 18 23 23 N 1.31574 * 120.00082 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99738 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47053 * 60.00479 * 24 22 20 26 26 H 1.48502 * 109.46939 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47269 * 300.00229 * 24 22 20 28 28 C 1.47415 * 108.70498 * 0.70175 * 8 5 4 29 29 H 1.08996 * 109.47156 * 297.57244 * 1 2 3 30 30 H 1.08992 * 109.47220 * 57.57506 * 1 2 3 31 31 H 1.08998 * 109.46835 * 177.57386 * 1 2 3 32 32 H 1.09002 * 110.72352 * 324.78805 * 4 2 1 33 33 H 1.09002 * 110.71726 * 87.88485 * 4 2 1 34 34 H 1.09001 * 109.46904 * 179.32986 * 7 5 4 35 35 H 1.08995 * 109.47326 * 299.33505 * 7 5 4 36 36 H 1.08998 * 109.46950 * 59.33122 * 7 5 4 37 37 H 0.97008 * 119.99786 * 354.60976 * 11 9 8 38 38 H 1.07999 * 119.98513 * 0.02562 * 13 12 11 39 39 H 1.08002 * 119.91433 * 180.02562 * 14 13 12 40 40 H 1.08001 * 120.01102 * 179.97438 * 17 15 14 41 41 H 0.97001 * 119.99806 * 179.97438 * 23 22 20 42 42 H 1.09003 * 110.37015 * 94.93939 * 28 8 5 43 43 H 1.08999 * 110.37166 * 217.26323 * 28 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0862 -0.8084 -1.2019 5 6 3.4692 -1.2690 -0.6956 6 1 3.6699 -2.2827 -1.0426 7 6 4.5551 -0.3177 -1.2023 8 7 3.4271 -1.2427 0.7738 9 6 4.4481 -1.5597 1.5945 10 8 5.5162 -1.9083 1.1297 11 7 4.2869 -1.4848 2.9305 12 6 5.3082 -1.9211 3.7851 13 6 6.2250 -2.8653 3.3472 14 6 7.2313 -3.2953 4.1910 15 6 7.3279 -2.7859 5.4759 16 9 8.3134 -3.2102 6.2967 17 6 6.4175 -1.8437 5.9200 18 6 5.4080 -1.4034 5.0762 19 8 4.5164 -0.4750 5.5081 20 6 4.7303 0.0581 6.7277 21 1 5.5326 -0.3149 7.3469 22 6 3.9203 1.0852 7.1870 23 7 2.9425 1.5394 6.4327 24 14 4.2163 1.8234 8.8772 25 1 5.5862 2.3936 8.9354 26 1 3.2217 2.8969 9.1296 27 1 4.0758 0.7662 9.9106 28 6 2.0853 -0.8062 1.2006 29 1 -0.3633 0.4757 0.9109 30 1 -0.3633 0.5510 -0.8674 31 1 -0.3633 -1.0267 -0.0435 32 1 1.4468 -1.6637 -1.4204 33 1 2.1892 -0.1714 -2.0804 34 1 5.5263 -0.6439 -0.8302 35 1 4.5631 -0.3230 -2.2922 36 1 4.3495 0.6914 -0.8453 37 1 3.4639 -1.1287 3.3006 38 1 6.1522 -3.2646 2.3464 39 1 7.9445 -4.0302 3.8481 40 1 6.4946 -1.4485 6.9221 41 1 2.3756 2.2578 6.7543 42 1 1.4519 -1.6699 1.4030 43 1 2.1559 -0.1713 2.0837 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761661757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:26 Heat of formation + Delta-G solvation = -72.124818 kcal Electronic energy + Delta-G solvation = -27562.599854 eV Core-core repulsion = 23523.210299 eV Total energy + Delta-G solvation = -4039.389554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.20399 -40.56681 -39.21446 -37.85837 -36.20570 -34.14423 -32.94151 -32.39222 -31.56869 -29.35846 -28.11542 -26.96230 -25.75534 -25.47742 -23.00943 -22.04657 -21.29665 -20.37221 -19.36544 -18.31398 -18.08158 -17.38670 -16.68224 -16.00707 -15.56764 -15.20718 -14.99745 -14.94172 -14.60292 -14.28223 -13.84600 -13.68482 -13.58616 -13.54021 -13.41870 -13.16806 -12.90624 -12.51597 -12.33287 -12.24615 -12.07544 -11.96549 -11.72288 -11.63890 -11.35782 -10.97339 -10.96295 -10.78692 -10.70336 -10.56964 -10.53896 -9.79907 -9.78012 -9.39224 -8.94000 -8.54911 -7.82862 -6.99470 -6.58682 -4.16027 1.89649 2.15796 2.77420 3.08039 3.09327 3.11324 3.45587 3.85961 4.15083 4.34808 4.40829 4.53672 4.71361 4.87366 5.00049 5.02281 5.16183 5.22651 5.27292 5.37619 5.46004 5.54122 5.60188 5.66751 5.68191 5.70391 5.77534 5.83035 5.94993 6.03065 6.09272 6.15666 6.20015 6.31506 6.50956 6.63559 6.76173 6.94657 6.97265 7.10637 7.22331 7.35846 7.70309 7.85653 8.24648 8.85676 8.88540 9.49049 10.58641 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010124 B = 0.004502 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.992108 B = 6218.213912 C = 8623.318213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.086 0.914 4 C -0.125 4.125 5 C 0.155 3.845 6 H 0.072 0.928 7 C -0.164 4.164 8 N -0.632 5.632 9 C 0.722 3.278 10 O -0.580 6.580 11 N -0.662 5.662 12 C 0.085 3.915 13 C -0.064 4.064 14 C -0.223 4.223 15 C 0.122 3.878 16 F -0.152 7.152 17 C -0.255 4.255 18 C 0.153 3.847 19 O -0.172 6.172 20 C -0.391 4.391 21 H 0.093 0.907 22 C 0.043 3.957 23 N -0.862 5.862 24 Si 0.942 3.058 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.269 1.269 28 C 0.098 3.902 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.412 0.588 38 H 0.149 0.851 39 H 0.122 0.878 40 H 0.143 0.857 41 H 0.272 0.728 42 H 0.069 0.931 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.649 -3.348 -12.010 13.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.104 0.896 4 C -0.163 4.163 5 C 0.051 3.949 6 H 0.090 0.910 7 C -0.223 4.223 8 N -0.371 5.371 9 C 0.425 3.575 10 O -0.459 6.459 11 N -0.308 5.308 12 C -0.010 4.010 13 C -0.084 4.084 14 C -0.243 4.243 15 C 0.102 3.898 16 F -0.131 7.131 17 C -0.276 4.276 18 C 0.097 3.903 19 O -0.076 6.076 20 C -0.467 4.467 21 H 0.111 0.889 22 C -0.162 4.162 23 N -0.496 5.496 24 Si 0.766 3.234 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.194 1.194 28 C -0.025 4.025 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.249 0.751 38 H 0.167 0.833 39 H 0.140 0.860 40 H 0.160 0.840 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.218 -3.349 -12.372 13.494 hybrid contribution -0.053 0.606 1.358 1.488 sum -4.271 -2.743 -11.015 12.128 Atomic orbital electron populations 1.21701 0.93718 1.02147 1.02319 1.22315 0.96127 0.99539 0.94216 0.89596 1.22814 0.95115 1.00220 0.98103 1.21325 0.95316 0.99538 0.78680 0.90976 1.22177 1.00364 0.99385 1.00336 1.47606 1.11611 1.71706 1.06154 1.15343 0.82796 0.78653 0.80677 1.90828 1.24836 1.54843 1.75370 1.42297 1.19726 1.65389 1.03436 1.16720 0.95158 1.00916 0.88177 1.20811 0.93262 0.94194 1.00169 1.20495 1.03573 1.07051 0.93214 1.17449 0.87156 0.96669 0.88489 1.91403 1.60348 1.88983 1.72388 1.20815 0.99553 1.04533 1.02734 1.18684 0.89747 0.90720 0.91125 1.83897 1.42286 1.46585 1.34801 1.21280 1.17701 1.17365 0.90349 0.88917 1.25258 0.95301 0.95644 0.99961 1.69999 1.16744 1.26055 1.36816 0.85760 0.78639 0.78854 0.80144 1.19392 1.20223 1.19377 1.22432 0.83522 0.98356 0.98200 0.91942 0.92235 0.92357 0.90535 0.89965 0.90688 0.92123 0.92628 0.75138 0.83341 0.85992 0.83989 0.91865 0.91290 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.29 37.16 0.35 -0.75 16 2 C -0.10 -0.98 3.64 -88.47 -0.32 -1.30 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.12 -1.08 5.97 -24.90 -0.15 -1.23 16 5 C 0.16 1.85 3.48 -66.96 -0.23 1.62 16 6 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 7 C -0.16 -2.00 9.07 37.16 0.34 -1.67 16 8 N -0.63 -9.21 3.08 -168.70 -0.52 -9.73 16 9 C 0.72 13.29 8.07 -86.92 -0.70 12.59 16 10 O -0.58 -11.89 12.41 5.28 0.07 -11.83 16 11 N -0.66 -12.93 5.24 -14.07 -0.07 -13.01 16 12 C 0.09 1.84 6.45 -83.44 -0.54 1.30 16 13 C -0.06 -1.27 8.72 -39.43 -0.34 -1.62 16 14 C -0.22 -4.27 10.02 -39.48 -0.40 -4.67 16 15 C 0.12 2.50 7.29 -39.43 -0.29 2.22 16 16 F -0.15 -2.98 17.26 2.25 0.04 -2.94 16 17 C -0.26 -5.68 9.14 -39.36 -0.36 -6.04 16 18 C 0.15 3.60 6.66 -38.94 -0.26 3.34 16 19 O -0.17 -4.54 9.17 0.02 0.00 -4.54 16 20 C -0.39 -10.38 9.49 30.88 0.29 -10.09 16 21 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 22 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 23 N -0.86 -23.48 13.67 55.48 0.76 -22.72 16 24 Si 0.94 19.78 29.55 -169.99 -5.02 14.76 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 27 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 28 C 0.10 1.19 6.10 -2.53 -0.02 1.17 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 32 H 0.08 0.58 8.01 -51.93 -0.42 0.17 16 33 H 0.08 0.60 7.84 -51.93 -0.41 0.19 16 34 H 0.07 1.14 6.75 -51.93 -0.35 0.79 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.41 7.86 6.80 -40.82 -0.28 7.59 16 38 H 0.15 2.92 5.78 -52.49 -0.30 2.62 16 39 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 40 H 0.14 3.14 5.63 -52.49 -0.30 2.84 16 41 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.07 0.76 8.04 -51.93 -0.42 0.35 16 43 H 0.08 1.07 7.21 -51.93 -0.37 0.70 16 LS Contribution 355.19 15.07 5.35 5.35 Total: -1.00 -29.75 355.19 -7.76 -37.51 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -5.63 Total: 11.24 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -2.73 Total: -4.09 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.17 Total: -45.45 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: 0.07 Total: -16.37 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.75 -7.76 -37.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761661757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.618 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds