Wall clock time and date at job start Tue Mar 31 2020 14:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.88379 * 2 1 4 4 C 1.55152 * 111.00402 * 236.11978 * 2 1 3 5 5 C 1.54320 * 102.94467 * 206.38261 * 4 2 1 6 6 H 1.09005 * 110.01555 * 262.70568 * 5 4 2 7 7 C 1.52999 * 109.88547 * 141.61390 * 5 4 2 8 8 N 1.47029 * 107.27010 * 22.19361 * 5 4 2 9 9 C 1.34770 * 125.64740 * 181.01930 * 8 5 4 10 10 O 1.21599 * 120.00481 * 0.02562 * 9 8 5 11 11 N 1.34780 * 119.99831 * 180.02562 * 9 8 5 12 12 C 1.40136 * 119.99876 * 175.63182 * 11 9 8 13 13 C 1.38701 * 120.07765 * 34.59822 * 12 11 9 14 14 C 1.38200 * 120.02074 * 180.27206 * 13 12 11 15 15 C 1.38545 * 120.17421 * 359.74973 * 14 13 12 16 16 F 1.35097 * 119.92365 * 180.02562 * 15 14 13 17 17 C 1.38345 * 120.15192 * 359.97381 * 15 14 13 18 18 C 1.38745 * 119.97800 * 0.02562 * 17 15 14 19 19 O 1.35778 * 120.08384 * 179.97438 * 18 17 15 20 20 C 1.34797 * 117.00314 * 5.43203 * 19 18 17 21 21 H 1.08002 * 120.00450 * 354.94919 * 20 19 18 22 22 C 1.38638 * 120.00092 * 174.95498 * 20 19 18 23 23 N 1.31575 * 119.99961 * 359.72267 * 22 20 19 24 24 Si 1.86799 * 120.00277 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47195 * 59.99403 * 24 22 20 26 26 H 1.48496 * 109.47209 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47065 * 299.99926 * 24 22 20 28 28 C 1.47424 * 108.70050 * 1.28946 * 8 5 4 29 29 H 1.09008 * 109.46668 * 183.88329 * 1 2 3 30 30 H 1.09004 * 109.47131 * 303.87698 * 1 2 3 31 31 H 1.08995 * 109.47446 * 63.88114 * 1 2 3 32 32 H 1.09005 * 110.72236 * 88.02154 * 4 2 1 33 33 H 1.09000 * 110.72697 * 324.75101 * 4 2 1 34 34 H 1.09009 * 109.46835 * 300.73844 * 7 5 4 35 35 H 1.08993 * 109.47366 * 60.73367 * 7 5 4 36 36 H 1.08994 * 109.47501 * 180.74244 * 7 5 4 37 37 H 0.96999 * 120.00099 * 355.63462 * 11 9 8 38 38 H 1.07995 * 119.98764 * 359.97438 * 13 12 11 39 39 H 1.07993 * 119.91000 * 179.72229 * 14 13 12 40 40 H 1.07995 * 120.00921 * 180.02562 * 17 15 14 41 41 H 0.96993 * 119.99932 * 180.02562 * 23 22 20 42 42 H 1.08992 * 110.37109 * 94.47932 * 28 8 5 43 43 H 1.08996 * 110.36118 * 216.80267 * 28 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0861 -0.8074 -1.2025 5 6 3.4678 -1.2730 -0.6969 6 1 4.2444 -0.6002 -1.0609 7 6 3.7459 -2.6978 -1.1802 8 7 3.4281 -1.2421 0.7725 9 6 4.4491 -1.5603 1.5927 10 8 5.5170 -1.9088 1.1273 11 7 4.2864 -1.4921 2.9289 12 6 5.3164 -1.9099 3.7824 13 6 6.6411 -1.7135 3.4211 14 6 7.6560 -2.1310 4.2611 15 6 7.3544 -2.7416 5.4677 16 9 8.3505 -3.1473 6.2851 17 6 6.0356 -2.9359 5.8377 18 6 5.0117 -2.5192 4.9992 19 8 3.7166 -2.7092 5.3600 20 6 3.4913 -3.2053 6.5930 21 1 4.3217 -3.5090 7.2131 22 6 2.1933 -3.3259 7.0651 23 7 1.1818 -2.9510 6.3118 24 14 1.8809 -4.0140 8.7734 25 1 2.5517 -3.1561 9.7830 26 1 0.4199 -4.0386 9.0376 27 1 2.4230 -5.3940 8.8579 28 6 2.0844 -0.8118 1.2001 29 1 -0.3633 -1.0254 0.0696 30 1 -0.3633 0.5729 0.8532 31 1 -0.3634 0.4524 -0.9227 32 1 2.1915 -0.1693 -2.0799 33 1 1.4472 -1.6630 -1.4212 34 1 2.9701 -3.3661 -0.8062 35 1 3.7482 -2.7179 -2.2699 36 1 4.7170 -3.0245 -0.8086 37 1 3.4563 -1.1539 3.2998 38 1 6.8795 -1.2386 2.4810 39 1 8.6868 -1.9813 3.9760 40 1 5.8032 -3.4117 6.7789 41 1 0.2738 -3.0350 6.6423 42 1 1.4538 -1.6783 1.3985 43 1 2.1524 -0.1802 2.0858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761661762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:30 Heat of formation + Delta-G solvation = -73.956240 kcal Electronic energy + Delta-G solvation = -27570.472860 eV Core-core repulsion = 23531.003889 eV Total energy + Delta-G solvation = -4039.468971 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.22044 -40.50143 -39.18972 -37.80615 -36.21935 -34.10557 -32.96666 -32.39997 -31.54739 -29.36786 -28.09903 -27.01124 -25.70811 -25.47119 -22.91157 -21.97740 -21.13359 -20.52254 -19.30055 -18.31509 -18.15878 -17.36137 -16.82624 -16.08135 -15.38902 -15.20747 -15.03468 -14.86341 -14.37829 -14.27968 -14.12876 -13.67785 -13.64073 -13.47537 -13.27845 -13.19728 -12.77616 -12.70761 -12.32593 -12.12966 -12.10373 -11.96933 -11.65580 -11.55397 -11.31959 -10.94046 -10.92710 -10.84494 -10.71606 -10.59554 -10.55399 -9.79040 -9.72695 -9.38244 -8.94561 -8.51733 -7.83601 -7.06193 -6.59205 -4.16921 1.88767 2.15751 2.80606 3.07926 3.08537 3.10816 3.49774 3.85822 4.18193 4.34378 4.38816 4.56415 4.69918 4.89001 4.97347 5.10726 5.14884 5.20544 5.27746 5.41787 5.43779 5.52094 5.61638 5.69078 5.72999 5.74978 5.77074 5.83702 5.94257 6.06128 6.10122 6.16723 6.23306 6.32656 6.51319 6.61740 6.78962 6.94358 6.96118 7.10817 7.23086 7.37084 7.69777 7.85049 8.26736 8.86213 8.91224 9.48973 10.57789 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009988 B = 0.004568 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.782934 B = 6127.982379 C = 8546.607346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.124 4.124 5 C 0.155 3.845 6 H 0.073 0.927 7 C -0.164 4.164 8 N -0.633 5.633 9 C 0.723 3.277 10 O -0.582 6.582 11 N -0.663 5.663 12 C 0.079 3.921 13 C -0.051 4.051 14 C -0.228 4.228 15 C 0.127 3.873 16 F -0.152 7.152 17 C -0.258 4.258 18 C 0.157 3.843 19 O -0.168 6.168 20 C -0.392 4.392 21 H 0.093 0.907 22 C 0.043 3.957 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.269 1.269 28 C 0.101 3.899 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.410 0.590 38 H 0.143 0.857 39 H 0.122 0.878 40 H 0.143 0.857 41 H 0.272 0.728 42 H 0.073 0.927 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.192 5.698 -11.470 12.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.102 0.898 4 C -0.162 4.162 5 C 0.051 3.949 6 H 0.091 0.909 7 C -0.222 4.222 8 N -0.371 5.371 9 C 0.426 3.574 10 O -0.461 6.461 11 N -0.311 5.311 12 C -0.016 4.016 13 C -0.071 4.071 14 C -0.248 4.248 15 C 0.107 3.893 16 F -0.131 7.131 17 C -0.279 4.279 18 C 0.100 3.900 19 O -0.071 6.071 20 C -0.468 4.468 21 H 0.111 0.889 22 C -0.161 4.161 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.194 1.194 28 C -0.022 4.022 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.246 0.754 38 H 0.160 0.840 39 H 0.140 0.860 40 H 0.160 0.840 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.846 5.448 -11.846 13.067 hybrid contribution -0.443 -0.394 1.348 1.472 sum -1.289 5.054 -10.499 11.723 Atomic orbital electron populations 1.21706 0.93677 1.02500 1.02053 1.22358 0.96227 0.99212 0.94434 0.89762 1.22829 0.95312 1.00260 0.97837 1.21338 0.97295 0.97452 0.78771 0.90941 1.22174 1.03510 0.96075 1.00473 1.47598 1.11502 1.71880 1.06160 1.15365 0.83003 0.78306 0.80741 1.90854 1.25209 1.54685 1.75330 1.42231 1.19074 1.66381 1.03367 1.16667 0.87663 1.06344 0.90959 1.20684 0.89471 0.97891 0.99091 1.20482 0.99600 1.09473 0.95229 1.17452 0.84157 0.98563 0.89118 1.91406 1.60664 1.88763 1.72245 1.20831 0.90378 1.12495 1.04182 1.18817 0.85862 0.92798 0.92478 1.83932 1.18145 1.71584 1.33481 1.21299 0.93809 1.41977 0.89749 0.88922 1.25264 0.94164 0.96855 0.99863 1.70001 0.99188 1.43550 1.36725 0.85760 0.77928 0.79517 0.80198 1.19365 1.20214 1.19393 1.22449 0.83688 0.98539 0.97540 0.92132 0.92072 0.92269 0.90160 0.90273 0.92602 0.92100 0.90855 0.75385 0.83964 0.85978 0.83994 0.91850 0.90889 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.31 37.16 0.35 -0.78 16 2 C -0.10 -0.96 3.65 -88.35 -0.32 -1.28 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.12 -1.11 5.94 -24.90 -0.15 -1.26 16 5 C 0.16 1.89 3.46 -66.95 -0.23 1.66 16 6 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 7 C -0.16 -2.05 9.10 37.16 0.34 -1.71 16 8 N -0.63 -9.40 3.06 -168.55 -0.52 -9.91 16 9 C 0.72 13.46 8.13 -86.92 -0.71 12.75 16 10 O -0.58 -12.09 12.79 5.28 0.07 -12.02 16 11 N -0.66 -12.97 5.15 -14.07 -0.07 -13.05 16 12 C 0.08 1.69 6.33 -83.43 -0.53 1.16 16 13 C -0.05 -1.01 8.70 -39.42 -0.34 -1.35 16 14 C -0.23 -4.34 10.02 -39.48 -0.40 -4.74 16 15 C 0.13 2.59 7.29 -39.43 -0.29 2.30 16 16 F -0.15 -2.96 17.26 2.25 0.04 -2.92 16 17 C -0.26 -5.73 9.14 -39.35 -0.36 -6.09 16 18 C 0.16 3.68 6.66 -38.94 -0.26 3.42 16 19 O -0.17 -4.45 9.31 0.06 0.00 -4.45 16 20 C -0.39 -10.40 9.49 30.88 0.29 -10.10 16 21 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 22 C 0.04 1.13 5.49 -17.51 -0.10 1.03 16 23 N -0.86 -23.36 13.67 55.48 0.76 -22.60 16 24 Si 0.94 19.71 29.55 -169.99 -5.02 14.68 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 26 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 27 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 28 C 0.10 1.26 6.09 -2.41 -0.01 1.25 16 29 H 0.06 0.50 8.07 -51.92 -0.42 0.08 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.67 7.75 -51.93 -0.40 0.27 16 34 H 0.05 0.72 8.14 -51.92 -0.42 0.29 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.13 6.88 -51.93 -0.36 0.77 16 37 H 0.41 7.76 7.01 -40.82 -0.29 7.48 16 38 H 0.14 2.77 6.19 -52.49 -0.32 2.45 16 39 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 40 H 0.14 3.13 5.64 -52.49 -0.30 2.84 16 41 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 42 H 0.07 0.96 7.99 -51.93 -0.41 0.55 16 43 H 0.07 0.93 7.22 -51.93 -0.38 0.56 16 LS Contribution 356.25 15.07 5.37 5.37 Total: -1.00 -29.78 356.25 -7.76 -37.54 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -5.67 Total: 11.09 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -2.72 Total: -3.73 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.17 Total: -45.56 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.07 Total: -16.47 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.04 Total: -2.92 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.78 -7.76 -37.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761661762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.414 kcal (2) G-P(sol) polarization free energy of solvation -29.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds