Wall clock time and date at job start Tue Mar 31 2020 14:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.00188 * 2 1 4 4 C 1.54335 * 109.98970 * 238.95558 * 2 1 3 5 5 C 1.55163 * 103.02074 * 218.66806 * 4 2 1 6 6 H 1.09001 * 111.03848 * 277.22090 * 5 4 2 7 7 C 1.52999 * 111.00266 * 153.38188 * 5 4 2 8 8 C 1.54917 * 101.57994 * 35.30952 * 5 4 2 9 9 N 1.47027 * 109.87855 * 121.09436 * 2 1 3 10 10 C 1.34777 * 125.64724 * 298.38664 * 9 2 1 11 11 O 1.21602 * 120.00015 * 359.72536 * 10 9 2 12 12 N 1.34774 * 120.00401 * 179.71646 * 10 9 2 13 13 C 1.40130 * 120.00457 * 174.32731 * 12 10 9 14 14 C 1.38697 * 120.07426 * 335.23607 * 13 12 10 15 15 C 1.38195 * 120.02154 * 179.97438 * 14 13 12 16 16 C 1.38550 * 120.17571 * 359.97438 * 15 14 13 17 17 F 1.35099 * 119.92396 * 180.27700 * 16 15 14 18 18 C 1.38340 * 120.15005 * 0.02562 * 16 15 14 19 19 C 1.38741 * 119.97797 * 359.97438 * 18 16 15 20 20 O 1.35778 * 120.08765 * 180.02562 * 19 18 16 21 21 C 1.34804 * 117.00218 * 354.79873 * 20 19 18 22 22 H 1.08001 * 119.99371 * 5.02813 * 21 20 19 23 23 C 1.38631 * 120.00315 * 185.02358 * 21 20 19 24 24 N 1.31575 * 119.99930 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00138 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47109 * 90.00264 * 25 23 21 27 27 H 1.48501 * 109.47496 * 210.00195 * 25 23 21 28 28 H 1.48496 * 109.47242 * 330.00529 * 25 23 21 29 29 H 1.08994 * 109.46845 * 300.36820 * 1 2 3 30 30 H 1.09002 * 109.46786 * 60.36222 * 1 2 3 31 31 H 1.08995 * 109.47445 * 180.36290 * 1 2 3 32 32 H 1.08999 * 110.84659 * 100.20695 * 4 2 1 33 33 H 1.09000 * 110.67096 * 337.05065 * 4 2 1 34 34 H 1.09000 * 109.47161 * 306.35254 * 7 5 4 35 35 H 1.08998 * 109.46982 * 66.35251 * 7 5 4 36 36 H 1.09004 * 109.46703 * 186.34918 * 7 5 4 37 37 H 1.08998 * 110.36246 * 204.15603 * 8 5 4 38 38 H 1.08998 * 110.45889 * 81.87541 * 8 5 4 39 39 H 0.97000 * 119.99831 * 354.33414 * 12 10 9 40 40 H 1.08004 * 119.99130 * 359.97160 * 14 13 12 41 41 H 1.08002 * 119.91257 * 180.02562 * 15 14 13 42 42 H 1.07996 * 120.01471 * 179.97438 * 18 16 15 43 43 H 0.97001 * 120.00044 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7480 -1.2426 5 6 3.2863 -1.5186 -0.6913 6 1 4.1674 -0.8776 -0.6578 7 6 3.5590 -2.7780 -1.5161 8 6 2.8098 -1.8826 0.7371 9 7 2.0299 -0.7141 1.1840 10 6 1.8074 -0.3619 2.4658 11 8 1.1457 0.6265 2.7186 12 7 2.3179 -1.1053 3.4673 13 6 2.1884 -0.6760 4.7949 14 6 2.0250 0.6722 5.0766 15 6 1.8969 1.0944 6.3862 16 6 1.9307 0.1739 7.4212 17 9 1.7994 0.5916 8.6992 18 6 2.0934 -1.1726 7.1484 19 6 2.2226 -1.6034 5.8359 20 8 2.3819 -2.9244 5.5657 21 6 2.5143 -3.7533 6.6205 22 1 2.4100 -3.3700 7.6248 23 6 2.7843 -5.0976 6.4161 24 7 2.9117 -5.5644 5.1926 25 14 2.9685 -6.2460 7.8778 26 1 1.6440 -6.8203 8.2262 27 1 3.9076 -7.3428 7.5305 28 1 3.5002 -5.4882 9.0388 29 1 -0.3633 0.5195 0.8866 30 1 -0.3633 0.5082 -0.8932 31 1 -0.3634 -1.0276 0.0065 32 1 2.3598 -0.0452 -2.0191 33 1 1.3066 -1.4407 -1.6224 34 1 2.6521 -3.3802 -1.5704 35 1 3.8672 -2.4937 -2.5222 36 1 4.3521 -3.3573 -1.0432 37 1 3.6654 -2.0412 1.3935 38 1 2.1804 -2.7722 0.7136 39 1 2.7750 -1.9376 3.2692 40 1 1.9978 1.3924 4.2722 41 1 1.7693 2.1446 6.6035 42 1 2.1199 -1.8882 7.9568 43 1 3.1010 -6.5050 5.0496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761661768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:37 Heat of formation + Delta-G solvation = -72.838449 kcal Electronic energy + Delta-G solvation = -27527.250727 eV Core-core repulsion = 23487.830228 eV Total energy + Delta-G solvation = -4039.420500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.20250 -40.55491 -39.20401 -37.84809 -36.20633 -34.14162 -33.00553 -32.39497 -31.57511 -29.35864 -28.11679 -27.03608 -25.74419 -25.47564 -22.94574 -21.99570 -21.14742 -20.54622 -19.31213 -18.31756 -18.15887 -17.36566 -16.84471 -16.17255 -15.35040 -15.19174 -15.01213 -14.82775 -14.41940 -14.26770 -14.17530 -13.72237 -13.66735 -13.48374 -13.31813 -13.17379 -12.81030 -12.70797 -12.29389 -12.18660 -12.12608 -11.99106 -11.65405 -11.57427 -11.36774 -10.98184 -10.96761 -10.86413 -10.71455 -10.61708 -10.53104 -9.80977 -9.75066 -9.41132 -8.94797 -8.54523 -7.82471 -7.00093 -6.59021 -4.16477 1.89700 2.15769 2.77330 3.06937 3.08573 3.12967 3.45377 3.85831 4.15247 4.32440 4.41163 4.53825 4.67021 4.89506 4.98028 5.08592 5.15377 5.18039 5.25031 5.39342 5.41309 5.50049 5.60264 5.66465 5.68187 5.72718 5.77356 5.81726 5.91667 6.04094 6.07877 6.14642 6.21687 6.30280 6.48175 6.63496 6.76249 6.94744 6.97252 7.10686 7.22389 7.35974 7.70312 7.85421 8.24638 8.85403 8.88279 9.49089 10.58224 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010213 B = 0.004433 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.970073 B = 6314.727242 C = 8686.806785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.155 3.845 3 H 0.073 0.927 4 C -0.125 4.125 5 C -0.103 4.103 6 H 0.084 0.916 7 C -0.142 4.142 8 C 0.099 3.901 9 N -0.633 5.633 10 C 0.722 3.278 11 O -0.581 6.581 12 N -0.662 5.662 13 C 0.085 3.915 14 C -0.063 4.063 15 C -0.223 4.223 16 C 0.122 3.878 17 F -0.152 7.152 18 C -0.255 4.255 19 C 0.153 3.847 20 O -0.172 6.172 21 C -0.391 4.391 22 H 0.094 0.906 23 C 0.043 3.957 24 N -0.861 5.861 25 Si 0.942 3.058 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.266 1.266 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.412 0.588 40 H 0.149 0.851 41 H 0.122 0.878 42 H 0.143 0.857 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.163 5.968 -12.002 13.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.051 3.949 3 H 0.091 0.909 4 C -0.162 4.162 5 C -0.122 4.122 6 H 0.103 0.897 7 C -0.199 4.199 8 C -0.024 4.024 9 N -0.371 5.371 10 C 0.425 3.575 11 O -0.459 6.459 12 N -0.308 5.308 13 C -0.010 4.010 14 C -0.084 4.084 15 C -0.243 4.243 16 C 0.102 3.898 17 F -0.131 7.131 18 C -0.276 4.276 19 C 0.097 3.903 20 O -0.075 6.075 21 C -0.467 4.467 22 H 0.111 0.889 23 C -0.162 4.162 24 N -0.496 5.496 25 Si 0.766 3.234 26 H -0.198 1.198 27 H -0.202 1.202 28 H -0.191 1.191 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.249 0.751 40 H 0.166 0.834 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.741 6.341 -12.061 13.647 hybrid contribution 0.246 -1.085 1.006 1.500 sum 0.986 5.256 -11.055 12.281 Atomic orbital electron populations 1.22170 0.94915 1.02304 1.02829 1.21343 0.94436 0.95865 0.83222 0.90888 1.22837 0.97537 0.99455 0.96419 1.22312 0.98107 0.97642 0.94124 0.89728 1.21705 1.02244 0.96518 0.99458 1.22415 0.95549 0.89020 0.95426 1.47616 1.56115 1.29724 1.03653 1.15353 0.79831 0.83083 0.79241 1.90832 1.44387 1.28596 1.82099 1.42296 1.58923 1.26138 1.03473 1.16733 1.11735 0.91562 0.81017 1.20812 0.97847 0.93413 0.96326 1.20496 1.13400 0.98788 0.91650 1.17450 1.01798 0.92590 0.77943 1.91404 1.93561 1.90948 1.37211 1.20816 1.14779 0.94506 0.97476 1.18712 0.95375 0.85289 0.90949 1.83912 1.77986 1.10644 1.34963 1.21338 1.50466 0.88795 0.86096 0.88863 1.25262 0.96116 0.96478 0.98335 1.70009 1.44383 1.15312 1.19885 0.85689 0.78653 0.79316 0.79723 1.19796 1.20186 1.19055 0.90837 0.92055 0.92614 0.90131 0.90306 0.92194 0.92251 0.91999 0.90581 0.91027 0.75099 0.83351 0.85991 0.83979 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.11 37.16 0.34 -1.64 16 2 C 0.16 1.84 3.46 -66.94 -0.23 1.61 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 4 C -0.12 -1.07 5.95 -24.89 -0.15 -1.22 16 5 C -0.10 -0.93 3.64 -88.46 -0.32 -1.25 16 6 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 7 C -0.14 -1.09 9.29 37.16 0.35 -0.74 16 8 C 0.10 1.20 6.00 -2.53 -0.02 1.19 16 9 N -0.63 -9.20 3.06 -168.68 -0.52 -9.72 16 10 C 0.72 13.28 8.08 -86.92 -0.70 12.57 16 11 O -0.58 -11.89 12.56 5.28 0.07 -11.82 16 12 N -0.66 -12.95 5.23 -14.07 -0.07 -13.02 16 13 C 0.08 1.82 6.45 -83.44 -0.54 1.29 16 14 C -0.06 -1.27 8.71 -39.43 -0.34 -1.61 16 15 C -0.22 -4.28 10.02 -39.48 -0.40 -4.67 16 16 C 0.12 2.50 7.29 -39.43 -0.29 2.21 16 17 F -0.15 -2.98 17.26 2.25 0.04 -2.94 16 18 C -0.25 -5.67 9.14 -39.36 -0.36 -6.03 16 19 C 0.15 3.59 6.66 -38.94 -0.26 3.33 16 20 O -0.17 -4.53 9.17 0.04 0.00 -4.53 16 21 C -0.39 -10.37 9.49 30.88 0.29 -10.07 16 22 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 23 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 24 N -0.86 -23.43 13.67 55.48 0.76 -22.67 16 25 Si 0.94 19.74 29.55 -169.99 -5.02 14.72 16 26 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 27 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 28 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 29 H 0.07 1.10 6.89 -51.93 -0.36 0.74 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.64 7.72 -51.93 -0.40 0.24 16 34 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.95 7.39 -51.93 -0.38 0.56 16 38 H 0.07 0.89 8.04 -51.93 -0.42 0.48 16 39 H 0.41 7.93 6.90 -40.82 -0.28 7.64 16 40 H 0.15 2.92 5.79 -52.48 -0.30 2.62 16 41 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 42 H 0.14 3.15 5.63 -52.49 -0.30 2.85 16 43 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 355.66 15.07 5.36 5.36 Total: -1.00 -29.74 355.66 -7.76 -37.51 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -5.65 Total: 11.14 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -2.72 Total: -4.02 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.17 Total: -45.41 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.07 Total: -16.36 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.74 -7.76 -37.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761661768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.332 kcal (2) G-P(sol) polarization free energy of solvation -29.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds