Wall clock time and date at job start Tue Mar 31 2020 14:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.67700 * 2 1 4 4 C 1.54888 * 110.75519 * 236.77123 * 2 1 3 5 5 C 1.54275 * 104.19757 * 203.55913 * 4 2 1 6 6 C 1.53872 * 106.59660 * 23.60375 * 5 4 2 7 7 H 1.08998 * 110.03200 * 240.67103 * 6 5 4 8 8 N 1.46499 * 110.03049 * 119.28687 * 6 5 4 9 9 C 1.34783 * 119.99826 * 86.45594 * 8 6 5 10 10 O 1.21594 * 119.99868 * 359.97438 * 9 8 6 11 11 N 1.34777 * 119.99864 * 179.97438 * 9 8 6 12 12 C 1.40139 * 119.99741 * 175.62237 * 11 9 8 13 13 C 1.38694 * 120.07101 * 34.60375 * 12 11 9 14 14 C 1.38202 * 120.01580 * 180.27252 * 13 12 11 15 15 C 1.38542 * 120.17763 * 359.76703 * 14 13 12 16 16 F 1.35099 * 119.92406 * 179.97438 * 15 14 13 17 17 C 1.38341 * 120.14950 * 359.95017 * 15 14 13 18 18 C 1.38741 * 119.97820 * 0.02754 * 17 15 14 19 19 O 1.35781 * 120.08852 * 179.97438 * 18 17 15 20 20 C 1.34812 * 116.99925 * 5.43437 * 19 18 17 21 21 H 1.07998 * 119.99511 * 354.95526 * 20 19 18 22 22 C 1.38630 * 119.99521 * 174.67451 * 20 19 18 23 23 N 1.31570 * 120.00814 * 0.28031 * 22 20 19 24 24 Si 1.86803 * 119.99458 * 180.27532 * 22 20 19 25 25 H 1.48495 * 109.47265 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47113 * 120.00645 * 24 22 20 27 27 H 1.48502 * 109.47227 * 240.00070 * 24 22 20 28 28 C 1.54270 * 106.59929 * 0.02562 * 6 5 4 29 29 H 1.08997 * 109.46779 * 181.78348 * 1 2 3 30 30 H 1.08997 * 109.46726 * 301.77660 * 1 2 3 31 31 H 1.09000 * 109.47242 * 61.77464 * 1 2 3 32 32 H 1.09001 * 110.49225 * 84.87818 * 4 2 1 33 33 H 1.09001 * 110.59919 * 322.28471 * 4 2 1 34 34 H 1.09000 * 110.02891 * 264.32087 * 5 4 2 35 35 H 1.08990 * 110.07311 * 142.91562 * 5 4 2 36 36 H 0.96998 * 120.00287 * 266.44984 * 8 6 5 37 37 H 0.96996 * 119.99605 * 355.62918 * 11 9 8 38 38 H 1.07999 * 119.99330 * 0.02562 * 13 12 11 39 39 H 1.08001 * 119.91424 * 179.74018 * 14 13 12 40 40 H 1.07999 * 120.01206 * 180.02562 * 17 15 14 41 41 H 0.96999 * 120.00073 * 179.97438 * 23 22 20 42 42 H 1.09002 * 110.48035 * 95.06759 * 28 6 5 43 43 H 1.09002 * 110.48309 * 217.70562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0789 -0.7937 -1.2115 5 6 3.4949 -1.2214 -0.7735 6 6 3.4975 -1.2224 0.7652 7 1 4.2364 -0.5130 1.1378 8 7 3.7959 -2.5665 1.2656 9 6 5.0758 -2.9571 1.4262 10 8 5.9829 -2.1939 1.1553 11 7 5.3503 -4.1935 1.8871 12 6 6.6788 -4.6324 1.9675 13 6 7.6888 -3.7362 2.2842 14 6 8.9992 -4.1691 2.3576 15 6 9.3077 -5.4987 2.1202 16 9 10.5905 -5.9163 2.1928 17 6 8.3052 -6.3999 1.8095 18 6 6.9874 -5.9723 1.7346 19 8 6.0017 -6.8548 1.4293 20 6 6.3533 -8.1517 1.3211 21 1 7.3922 -8.4374 1.3946 22 6 5.3806 -9.1191 1.1212 23 7 4.1150 -8.7710 1.0316 24 14 5.8670 -10.9171 0.9790 25 1 7.3405 -11.0434 1.1134 26 1 5.2036 -11.6960 2.0553 27 1 5.4435 -11.4413 -0.3443 28 6 2.0828 -0.7959 1.2085 29 1 -0.3633 -1.0272 0.0320 30 1 -0.3633 0.5412 0.8736 31 1 -0.3634 0.4860 -0.9055 32 1 2.1288 -0.1562 -2.0943 33 1 1.4600 -1.6690 -1.4087 34 1 4.2320 -0.5109 -1.1477 35 1 3.7165 -2.2207 -1.1480 36 1 3.0723 -3.1754 1.4815 37 1 4.6283 -4.7795 2.1631 38 1 7.4517 -2.6990 2.4696 39 1 9.7850 -3.4690 2.6002 40 1 8.5481 -7.4360 1.6252 41 1 3.4345 -9.4479 0.8914 42 1 1.4642 -1.6717 1.4044 43 1 2.1356 -0.1596 2.0920 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782054696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:34 Heat of formation + Delta-G solvation = -88.209323 kcal Electronic energy + Delta-G solvation = -26873.919771 eV Core-core repulsion = 22833.832740 eV Total energy + Delta-G solvation = -4040.087031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.22408 -40.33373 -39.11757 -38.08765 -36.31991 -33.99020 -33.90715 -32.40056 -30.60577 -29.39875 -28.76194 -27.67938 -25.49869 -24.87189 -22.60242 -21.77864 -20.78234 -20.42525 -19.79284 -18.33387 -18.18479 -17.58148 -16.81114 -16.18568 -15.48951 -15.25972 -15.19656 -14.98179 -14.67078 -14.32488 -14.22375 -13.81430 -13.61250 -13.53611 -13.41683 -13.29242 -13.17379 -12.51763 -12.38374 -12.13916 -11.83247 -11.64356 -11.53212 -11.34019 -11.10580 -11.01912 -10.94681 -10.72106 -10.70999 -10.55590 -10.52034 -9.83021 -9.73535 -9.42308 -8.96362 -8.90295 -7.84670 -7.07332 -6.60126 -4.17768 1.88541 2.15083 2.95136 3.05631 3.08293 3.13511 3.49927 3.85427 4.35512 4.38173 4.42116 4.51652 4.71695 4.88320 4.96829 5.14449 5.15714 5.22228 5.29017 5.35621 5.38359 5.43706 5.61326 5.64367 5.70773 5.76554 5.77076 5.92322 5.95985 6.06099 6.07661 6.19190 6.24719 6.25732 6.58909 6.70982 6.76801 6.93747 6.96428 7.10348 7.18743 7.34888 7.69376 7.84599 8.31580 8.85796 8.90992 9.48331 10.57089 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011102 B = 0.003526 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.434395 B = 7938.851719 C =10095.792100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.077 0.923 4 C -0.120 4.120 5 C -0.138 4.138 6 C 0.162 3.838 7 H 0.090 0.910 8 N -0.741 5.741 9 C 0.704 3.296 10 O -0.586 6.586 11 N -0.665 5.665 12 C 0.079 3.921 13 C -0.051 4.051 14 C -0.228 4.228 15 C 0.127 3.873 16 F -0.152 7.152 17 C -0.258 4.258 18 C 0.157 3.843 19 O -0.169 6.169 20 C -0.392 4.392 21 H 0.095 0.905 22 C 0.043 3.957 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.265 1.265 26 H -0.275 1.275 27 H -0.275 1.275 28 C -0.126 4.126 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.397 0.603 37 H 0.410 0.590 38 H 0.143 0.857 39 H 0.122 0.878 40 H 0.143 0.857 41 H 0.271 0.729 42 H 0.074 0.926 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.951 12.982 0.218 14.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.096 0.904 4 C -0.158 4.158 5 C -0.177 4.177 6 C 0.057 3.943 7 H 0.108 0.892 8 N -0.396 5.396 9 C 0.404 3.596 10 O -0.464 6.464 11 N -0.312 5.312 12 C -0.016 4.016 13 C -0.071 4.071 14 C -0.248 4.248 15 C 0.107 3.893 16 F -0.131 7.131 17 C -0.279 4.279 18 C 0.101 3.899 19 O -0.072 6.072 20 C -0.467 4.467 21 H 0.112 0.888 22 C -0.162 4.162 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.190 1.190 26 H -0.200 1.200 27 H -0.201 1.201 28 C -0.164 4.164 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.231 0.769 37 H 0.246 0.754 38 H 0.160 0.840 39 H 0.140 0.860 40 H 0.160 0.840 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.598 13.573 -0.125 14.683 hybrid contribution -0.150 -1.723 0.057 1.731 sum -5.747 11.850 -0.068 13.170 Atomic orbital electron populations 1.21756 0.94822 1.01968 1.01558 1.22066 0.95466 0.99205 0.94748 0.90422 1.22442 0.96178 0.99690 0.97443 1.22619 0.96870 1.02601 0.95572 1.21420 0.96554 0.83089 0.93274 0.89192 1.45291 1.06022 1.16629 1.71679 1.15923 0.83327 0.82240 0.78061 1.90863 1.44382 1.53351 1.57852 1.42210 1.07432 1.15000 1.66570 1.16649 0.83765 0.90570 1.10605 1.20680 0.90501 0.99485 0.96479 1.20488 0.97186 0.93937 1.13200 1.17454 0.77725 0.92907 1.01214 1.91407 1.36534 1.91059 1.94081 1.20840 0.91607 1.01173 1.14292 1.18822 0.88195 0.89331 0.93602 1.83936 1.30941 1.17267 1.75068 1.21402 0.94906 0.78890 1.51551 0.88800 1.25269 0.94590 1.00060 0.96279 1.70017 0.99866 1.34631 1.44977 0.85626 0.79090 0.80310 0.78353 1.18954 1.20041 1.20064 1.22729 0.95084 1.00355 0.98234 0.92495 0.92720 0.92644 0.91745 0.91464 0.91247 0.90979 0.76884 0.75381 0.83960 0.85987 0.83995 0.91941 0.90736 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.28 37.16 0.34 -0.65 16 2 C -0.10 -0.76 3.49 -88.62 -0.31 -1.07 16 3 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 4 C -0.12 -1.09 6.27 -25.07 -0.16 -1.25 16 5 C -0.14 -1.59 6.59 -25.61 -0.17 -1.76 16 6 C 0.16 1.88 3.23 -66.81 -0.22 1.66 16 7 H 0.09 1.16 7.61 -51.93 -0.39 0.77 16 8 N -0.74 -9.88 5.00 -57.58 -0.29 -10.16 16 9 C 0.70 12.33 8.40 -86.91 -0.73 11.60 16 10 O -0.59 -11.80 13.44 5.28 0.07 -11.72 16 11 N -0.67 -12.40 5.20 -14.07 -0.07 -12.47 16 12 C 0.08 1.66 6.33 -83.44 -0.53 1.14 16 13 C -0.05 -1.00 8.69 -39.43 -0.34 -1.34 16 14 C -0.23 -4.31 10.02 -39.48 -0.40 -4.70 16 15 C 0.13 2.57 7.29 -39.43 -0.29 2.29 16 16 F -0.15 -2.95 17.26 2.25 0.04 -2.91 16 17 C -0.26 -5.70 9.14 -39.36 -0.36 -6.06 16 18 C 0.16 3.64 6.66 -38.94 -0.26 3.38 16 19 O -0.17 -4.43 9.31 0.00 0.00 -4.43 16 20 C -0.39 -10.34 9.49 30.88 0.29 -10.05 16 21 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 22 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 23 N -0.86 -23.40 13.67 55.48 0.76 -22.64 16 24 Si 0.94 19.71 29.55 -169.99 -5.02 14.69 16 25 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 27 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 28 C -0.13 -1.09 5.98 -25.06 -0.15 -1.24 16 29 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.99 7.92 -51.93 -0.41 0.58 16 36 H 0.40 4.52 8.36 -40.82 -0.34 4.18 16 37 H 0.41 7.27 8.58 -40.82 -0.35 6.92 16 38 H 0.14 2.72 6.19 -52.49 -0.32 2.40 16 39 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 40 H 0.14 3.13 5.64 -52.49 -0.30 2.83 16 41 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 42 H 0.07 0.62 7.63 -51.93 -0.40 0.22 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -29.75 359.62 -8.18 -37.93 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -5.72 Total: 13.35 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -3.36 Total: -7.04 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.40 Total: -45.28 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.07 Total: -16.15 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.75 -8.18 -37.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782054696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.282 kcal (2) G-P(sol) polarization free energy of solvation -29.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds