Wall clock time and date at job start Tue Mar 31 2020 14:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.67700 * 2 1 4 4 C 1.54888 * 110.75519 * 236.77123 * 2 1 3 5 5 C 1.54275 * 104.19757 * 203.55913 * 4 2 1 6 6 C 1.53872 * 106.59660 * 23.60375 * 5 4 2 7 7 H 1.08998 * 110.03200 * 240.67103 * 6 5 4 8 8 N 1.46499 * 110.03049 * 119.28687 * 6 5 4 9 9 C 1.34783 * 119.99826 * 86.45594 * 8 6 5 10 10 O 1.21594 * 119.99868 * 359.97438 * 9 8 6 11 11 N 1.34777 * 119.99864 * 179.97438 * 9 8 6 12 12 C 1.40139 * 119.99741 * 175.62237 * 11 9 8 13 13 C 1.38694 * 120.07101 * 34.60375 * 12 11 9 14 14 C 1.38202 * 120.01580 * 180.27252 * 13 12 11 15 15 C 1.38542 * 120.17763 * 359.76703 * 14 13 12 16 16 F 1.35099 * 119.92406 * 179.97438 * 15 14 13 17 17 C 1.38341 * 120.14950 * 359.95017 * 15 14 13 18 18 C 1.38741 * 119.97820 * 0.02754 * 17 15 14 19 19 O 1.35781 * 120.08852 * 179.97438 * 18 17 15 20 20 C 1.34812 * 116.99925 * 5.43437 * 19 18 17 21 21 H 1.07998 * 119.99511 * 354.95526 * 20 19 18 22 22 C 1.38630 * 119.99521 * 174.67451 * 20 19 18 23 23 N 1.31570 * 120.00814 * 0.28031 * 22 20 19 24 24 Si 1.86803 * 119.99458 * 180.27532 * 22 20 19 25 25 H 1.48495 * 109.47265 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47113 * 120.00645 * 24 22 20 27 27 H 1.48502 * 109.47227 * 240.00070 * 24 22 20 28 28 C 1.54270 * 106.59929 * 0.02562 * 6 5 4 29 29 H 1.08997 * 109.46779 * 181.78348 * 1 2 3 30 30 H 1.08997 * 109.46726 * 301.77660 * 1 2 3 31 31 H 1.09000 * 109.47242 * 61.77464 * 1 2 3 32 32 H 1.09001 * 110.49225 * 84.87818 * 4 2 1 33 33 H 1.09001 * 110.59919 * 322.28471 * 4 2 1 34 34 H 1.09000 * 110.02891 * 264.32087 * 5 4 2 35 35 H 1.08990 * 110.07311 * 142.91562 * 5 4 2 36 36 H 0.96998 * 120.00287 * 266.44984 * 8 6 5 37 37 H 0.96996 * 119.99605 * 355.62918 * 11 9 8 38 38 H 1.07999 * 119.99330 * 0.02562 * 13 12 11 39 39 H 1.08001 * 119.91424 * 179.74018 * 14 13 12 40 40 H 1.07999 * 120.01206 * 180.02562 * 17 15 14 41 41 H 0.96999 * 120.00073 * 179.97438 * 23 22 20 42 42 H 1.09002 * 110.48035 * 95.06759 * 28 6 5 43 43 H 1.09002 * 110.48309 * 217.70562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0789 -0.7937 -1.2115 5 6 3.4949 -1.2214 -0.7735 6 6 3.4975 -1.2224 0.7652 7 1 4.2364 -0.5130 1.1378 8 7 3.7959 -2.5665 1.2656 9 6 5.0758 -2.9571 1.4262 10 8 5.9829 -2.1939 1.1553 11 7 5.3503 -4.1935 1.8871 12 6 6.6788 -4.6324 1.9675 13 6 7.6888 -3.7362 2.2842 14 6 8.9992 -4.1691 2.3576 15 6 9.3077 -5.4987 2.1202 16 9 10.5905 -5.9163 2.1928 17 6 8.3052 -6.3999 1.8095 18 6 6.9874 -5.9723 1.7346 19 8 6.0017 -6.8548 1.4293 20 6 6.3533 -8.1517 1.3211 21 1 7.3922 -8.4374 1.3946 22 6 5.3806 -9.1191 1.1212 23 7 4.1150 -8.7710 1.0316 24 14 5.8670 -10.9171 0.9790 25 1 7.3405 -11.0434 1.1134 26 1 5.2036 -11.6960 2.0553 27 1 5.4435 -11.4413 -0.3443 28 6 2.0828 -0.7959 1.2085 29 1 -0.3633 -1.0272 0.0320 30 1 -0.3633 0.5412 0.8736 31 1 -0.3634 0.4860 -0.9055 32 1 2.1288 -0.1562 -2.0943 33 1 1.4600 -1.6690 -1.4087 34 1 4.2320 -0.5109 -1.1477 35 1 3.7165 -2.2207 -1.1480 36 1 3.0723 -3.1754 1.4815 37 1 4.6283 -4.7795 2.1631 38 1 7.4517 -2.6990 2.4696 39 1 9.7850 -3.4690 2.6002 40 1 8.5481 -7.4360 1.6252 41 1 3.4345 -9.4479 0.8914 42 1 1.4642 -1.6717 1.4044 43 1 2.1356 -0.1596 2.0920 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782054696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:33 Heat of formation + Delta-G solvation = -105.501666 kcal Electronic energy + Delta-G solvation = -26874.669623 eV Core-core repulsion = 22833.832740 eV Total energy + Delta-G solvation = -4040.836883 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.82512 -41.78814 -40.59092 -39.24450 -37.98424 -35.53482 -35.03064 -34.30788 -31.51303 -31.04076 -30.01482 -28.86959 -27.38340 -25.67759 -24.17501 -23.39013 -22.15565 -21.32767 -20.74312 -20.14252 -19.65996 -19.16063 -18.30637 -17.21895 -17.07203 -16.87700 -16.59896 -16.36327 -16.11956 -15.94749 -15.54350 -15.37529 -15.24573 -14.90222 -14.63949 -14.32238 -14.04991 -13.97338 -13.76108 -13.42272 -13.22236 -13.04286 -12.75322 -12.57301 -12.37194 -12.31175 -12.13041 -11.85611 -11.74263 -11.64057 -11.40284 -11.36621 -11.29215 -11.00672 -10.83227 -10.09877 -9.54164 -8.74003 -8.51185 -6.17227 0.21933 0.46856 1.37260 1.42784 1.53184 1.62196 2.06144 2.14245 2.68828 3.05536 3.15194 3.20519 3.45893 3.61367 3.65699 3.94086 3.96205 4.16763 4.34616 4.37246 4.46056 4.50748 4.54044 4.62334 4.69897 4.72308 4.89882 4.94848 5.02645 5.05860 5.08999 5.14311 5.17781 5.23009 5.31120 5.32058 5.35642 5.38639 5.55698 5.57779 5.67276 5.92357 5.95379 6.08995 6.93525 6.96367 7.48280 7.63596 8.69435 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011102 B = 0.003526 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.434395 B = 7938.851719 C =10095.792100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.086 0.914 4 C -0.115 4.115 5 C -0.138 4.138 6 C 0.157 3.843 7 H 0.078 0.922 8 N -0.725 5.725 9 C 0.702 3.298 10 O -0.612 6.612 11 N -0.667 5.667 12 C 0.080 3.920 13 C -0.052 4.052 14 C -0.203 4.203 15 C 0.121 3.879 16 F -0.145 7.145 17 C -0.264 4.264 18 C 0.130 3.870 19 O -0.202 6.202 20 C -0.416 4.416 21 H 0.099 0.901 22 C -0.008 4.008 23 N -0.905 5.905 24 Si 1.011 2.989 25 H -0.257 1.257 26 H -0.267 1.267 27 H -0.270 1.270 28 C -0.118 4.118 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.408 0.592 37 H 0.413 0.587 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.136 0.864 41 H 0.274 0.726 42 H 0.081 0.919 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.985 14.104 0.581 15.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 H 0.104 0.896 4 C -0.152 4.152 5 C -0.177 4.177 6 C 0.053 3.947 7 H 0.096 0.904 8 N -0.380 5.380 9 C 0.403 3.597 10 O -0.493 6.493 11 N -0.314 5.314 12 C -0.016 4.016 13 C -0.072 4.072 14 C -0.223 4.223 15 C 0.101 3.899 16 F -0.123 7.123 17 C -0.285 4.285 18 C 0.077 3.923 19 O -0.107 6.107 20 C -0.492 4.492 21 H 0.116 0.884 22 C -0.208 4.208 23 N -0.541 5.541 24 Si 0.831 3.169 25 H -0.181 1.181 26 H -0.192 1.192 27 H -0.195 1.195 28 C -0.156 4.156 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.244 0.756 37 H 0.249 0.751 38 H 0.170 0.830 39 H 0.175 0.825 40 H 0.154 0.846 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.647 14.737 0.245 15.784 hybrid contribution -0.026 -1.843 -0.031 1.843 sum -5.673 12.894 0.214 14.088 Atomic orbital electron populations 1.21736 0.93684 1.02086 1.02360 1.22055 0.96292 0.99165 0.93348 0.89612 1.22417 0.94319 1.00031 0.98477 1.22587 0.98604 1.00970 0.95544 1.21624 0.98191 0.81636 0.93273 0.90408 1.45283 1.04819 1.17526 1.70379 1.16058 0.84347 0.81525 0.77820 1.90829 1.45541 1.53895 1.59030 1.42236 1.06805 1.15500 1.66876 1.16908 0.85195 0.90072 1.09447 1.20869 0.90526 0.99628 0.96201 1.20877 0.97703 0.93741 1.09978 1.17444 0.77681 0.93182 1.01562 1.91426 1.35813 1.91074 1.94027 1.20916 0.91861 1.01412 1.14279 1.19161 0.88407 0.89964 0.94816 1.83914 1.32056 1.17495 1.77280 1.21787 0.95480 0.79538 1.52355 0.88408 1.26360 0.94451 1.04336 0.95631 1.70120 1.00979 1.36192 1.46858 0.84621 0.79125 0.74551 0.78575 1.18092 1.19156 1.19465 1.22715 0.92896 1.00911 0.99075 0.92743 0.91807 0.92001 0.90757 0.91599 0.91758 0.93592 0.75629 0.75117 0.82965 0.82475 0.84646 0.91632 0.90085 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.28 71.98 0.67 -0.93 16 2 C -0.09 -1.22 3.49 -9.50 -0.03 -1.26 16 3 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.11 -1.94 6.27 31.67 0.20 -1.74 16 5 C -0.14 -3.18 6.59 31.32 0.21 -2.97 16 6 C 0.16 3.54 3.23 45.72 0.15 3.68 16 7 H 0.08 1.97 7.61 -2.39 -0.02 1.95 16 8 N -0.72 -19.15 5.00 -454.33 -2.27 -21.42 16 9 C 0.70 24.64 8.40 179.05 1.50 26.14 16 10 O -0.61 -24.53 13.44 -4.01 -0.05 -24.58 16 11 N -0.67 -25.24 5.20 -316.69 -1.65 -26.88 16 12 C 0.08 3.36 6.33 38.21 0.24 3.61 16 13 C -0.05 -1.96 8.69 22.37 0.19 -1.77 16 14 C -0.20 -7.20 10.02 22.33 0.22 -6.98 16 15 C 0.12 4.76 7.29 22.37 0.16 4.92 16 16 F -0.14 -5.35 17.26 44.97 0.78 -4.57 16 17 C -0.26 -11.75 9.14 22.41 0.20 -11.54 16 18 C 0.13 6.20 6.66 22.68 0.15 6.35 16 19 O -0.20 -11.01 9.31 -22.91 -0.21 -11.23 16 20 C -0.42 -22.67 9.49 67.91 0.64 -22.02 16 21 H 0.10 5.04 5.20 -2.91 -0.02 5.02 16 22 C -0.01 -0.43 5.49 84.83 0.47 0.03 16 23 N -0.90 -50.67 13.67 21.61 0.30 -50.37 16 24 Si 1.01 40.77 29.55 68.60 2.03 42.80 16 25 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 26 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 27 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 28 C -0.12 -1.82 5.98 31.68 0.19 -1.63 16 29 H 0.05 0.65 8.13 -2.39 -0.02 0.63 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.14 8.05 -2.39 -0.02 1.12 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.29 7.92 -2.39 -0.02 1.27 16 36 H 0.41 9.13 8.36 -92.71 -0.77 8.35 16 37 H 0.41 15.09 8.58 -92.71 -0.80 14.29 16 38 H 0.15 5.57 6.19 -2.91 -0.02 5.55 16 39 H 0.16 4.49 8.06 -2.91 -0.02 4.47 16 40 H 0.14 6.11 5.64 -2.91 -0.02 6.10 16 41 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 42 H 0.08 1.18 7.63 -2.39 -0.02 1.16 16 43 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -65.23 359.62 3.58 -61.65 By element: Atomic # 1 Polarization: 41.21 SS G_CDS: -0.50 Total: 40.71 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 5.17 Total: -6.10 kcal Atomic # 7 Polarization: -95.06 SS G_CDS: -3.62 Total: -98.68 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -0.27 Total: -35.81 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.78 Total: -4.57 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -65.23 3.58 -61.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782054696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.853 kcal (2) G-P(sol) polarization free energy of solvation -65.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds