Wall clock time and date at job start Tue Mar 31 2020 13:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99876 * 2 1 4 4 C 1.52995 * 109.47288 * 125.00584 * 3 2 1 5 5 H 1.09001 * 109.46986 * 304.99503 * 4 3 2 6 6 C 1.52999 * 109.47419 * 185.00136 * 4 3 2 7 7 C 1.52994 * 109.47694 * 174.99550 * 6 4 3 8 8 N 1.46496 * 109.47470 * 64.99501 * 4 3 2 9 9 C 1.34780 * 120.00425 * 205.00062 * 8 4 3 10 10 O 1.21592 * 119.99532 * 0.02562 * 9 8 4 11 11 N 1.34769 * 120.00403 * 180.02562 * 9 8 4 12 12 C 1.40133 * 119.99970 * 175.62985 * 11 9 8 13 13 C 1.38686 * 120.07867 * 34.59457 * 12 11 9 14 14 C 1.38202 * 120.02490 * 179.76698 * 13 12 11 15 15 C 1.38550 * 120.17011 * 0.51039 * 14 13 12 16 16 F 1.35102 * 119.92015 * 179.76816 * 15 14 13 17 17 C 1.38340 * 120.15420 * 359.74278 * 15 14 13 18 18 C 1.38739 * 119.97427 * 359.97438 * 17 15 14 19 19 O 1.35781 * 120.08566 * 179.97438 * 18 17 15 20 20 C 1.34802 * 117.00042 * 5.43376 * 19 18 17 21 21 H 1.08003 * 119.99881 * 354.95488 * 20 19 18 22 22 C 1.38638 * 120.00245 * 174.95035 * 20 19 18 23 23 N 1.31567 * 120.00451 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99839 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47442 * 89.99517 * 24 22 20 26 26 H 1.48498 * 109.47006 * 209.99874 * 24 22 20 27 27 H 1.48502 * 109.46900 * 329.99626 * 24 22 20 28 28 H 1.07997 * 119.99959 * 180.02562 * 1 2 3 29 29 H 1.07996 * 119.99819 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00443 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47140 * 5.00083 * 3 2 1 32 32 H 1.09005 * 109.47065 * 245.00003 * 3 2 1 33 33 H 1.09006 * 109.46799 * 294.99675 * 6 4 3 34 34 H 1.09005 * 109.46961 * 54.99110 * 6 4 3 35 35 H 1.08996 * 109.47072 * 299.99914 * 7 6 4 36 36 H 1.09010 * 109.46911 * 59.99438 * 7 6 4 37 37 H 1.08996 * 109.47403 * 179.97438 * 7 6 4 38 38 H 0.97000 * 120.00086 * 25.00408 * 8 4 3 39 39 H 0.97008 * 119.99878 * 355.62923 * 11 9 8 40 40 H 1.08005 * 119.99001 * 0.02562 * 13 12 11 41 41 H 1.08000 * 119.91695 * 180.23263 * 14 13 12 42 42 H 1.07999 * 120.01244 * 180.02562 * 17 15 14 43 43 H 0.96997 * 120.00220 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0351 1.3332 1.1815 5 1 2.4884 1.1470 2.1059 6 6 3.7092 2.7047 1.2552 7 6 4.5857 2.7757 2.5071 8 7 4.0547 0.2970 1.0000 9 6 4.6913 -0.2170 2.0710 10 8 4.4191 0.1791 3.1879 11 7 5.6297 -1.1699 1.9040 12 6 6.3561 -1.6387 3.0068 13 6 5.7475 -1.7373 4.2491 14 6 6.4636 -2.2044 5.3349 15 6 7.7932 -2.5655 5.1889 16 9 8.4898 -3.0171 6.2548 17 6 8.4090 -2.4652 3.9542 18 6 7.6943 -2.0026 2.8587 19 8 8.2966 -1.9027 1.6459 20 6 9.5557 -2.3741 1.5472 21 1 10.0690 -2.7318 2.4276 22 6 10.1917 -2.3998 0.3156 23 7 11.4208 -2.8593 0.2193 24 14 9.3042 -1.7806 -1.2071 25 1 9.5694 -0.3296 -1.3789 26 1 9.7937 -2.5179 -2.3995 27 1 7.8439 -2.0020 -1.0531 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5399 0.9353 0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6213 1.4027 -0.9314 33 1 4.3274 2.8536 0.3698 34 1 2.9467 3.4823 1.3008 35 1 3.9675 2.6267 3.3924 36 1 5.3482 1.9980 2.4614 37 1 5.0663 3.7526 2.5593 38 1 4.2716 -0.0192 0.1090 39 1 5.8022 -1.5311 1.0204 40 1 4.7123 -1.4528 4.3672 41 1 5.9868 -2.2839 6.3007 42 1 9.4455 -2.7477 3.8429 43 1 11.8659 -2.8770 -0.6423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799219996.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:26 Heat of formation + Delta-G solvation = -58.673529 kcal Electronic energy + Delta-G solvation = -27333.496234 eV Core-core repulsion = 23294.689971 eV Total energy + Delta-G solvation = -4038.806263 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.27024 -40.52985 -39.15148 -37.33117 -36.27916 -34.22283 -33.92271 -32.52229 -32.13709 -29.59714 -29.06039 -27.96926 -25.42794 -24.02229 -22.80182 -21.73916 -20.98383 -20.55859 -19.94023 -18.48264 -18.22684 -17.77737 -16.95013 -15.97440 -15.67504 -15.49913 -15.33707 -15.09311 -15.00437 -14.19787 -14.08298 -13.95702 -13.79349 -13.69185 -13.52081 -13.29890 -13.21112 -12.62373 -12.44722 -12.31711 -11.93517 -11.81436 -11.64950 -11.43372 -11.34196 -11.06067 -10.96466 -10.83555 -10.75186 -10.47890 -9.90407 -9.73346 -9.61132 -9.49934 -9.01579 -8.95113 -7.95612 -7.22819 -6.55065 -4.22321 1.77696 2.02573 2.03463 2.79708 3.09505 3.12549 3.19536 3.37668 4.07234 4.26374 4.30507 4.50143 4.55381 4.72744 4.82552 4.93735 4.99897 5.06647 5.14403 5.25382 5.47744 5.49560 5.52811 5.66612 5.69740 5.76174 5.90861 5.93268 6.03747 6.08633 6.20380 6.37385 6.42713 6.46878 6.57274 6.59862 6.66565 6.82937 6.87903 7.02140 7.16619 7.46578 7.65998 7.87166 8.15004 8.76282 8.78437 9.33913 10.52251 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009966 B = 0.004387 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.907689 B = 6381.233352 C = 8187.275477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C -0.103 4.103 4 C 0.169 3.831 5 H 0.091 0.909 6 C -0.135 4.135 7 C -0.144 4.144 8 N -0.741 5.741 9 C 0.704 3.296 10 O -0.576 6.576 11 N -0.670 5.670 12 C 0.079 3.921 13 C -0.050 4.050 14 C -0.221 4.221 15 C 0.127 3.873 16 F -0.149 7.149 17 C -0.246 4.246 18 C 0.164 3.836 19 O -0.209 6.209 20 C -0.391 4.391 21 H 0.109 0.891 22 C 0.066 3.934 23 N -0.872 5.872 24 Si 0.908 3.092 25 H -0.273 1.273 26 H -0.281 1.281 27 H -0.262 1.262 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.041 0.959 38 H 0.395 0.605 39 H 0.406 0.594 40 H 0.145 0.855 41 H 0.124 0.876 42 H 0.149 0.851 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.690 6.754 -1.735 19.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.167 4.167 3 C -0.141 4.141 4 C 0.064 3.936 5 H 0.109 0.891 6 C -0.174 4.174 7 C -0.202 4.202 8 N -0.396 5.396 9 C 0.405 3.595 10 O -0.453 6.453 11 N -0.317 5.317 12 C -0.016 4.016 13 C -0.071 4.071 14 C -0.241 4.241 15 C 0.107 3.893 16 F -0.128 7.128 17 C -0.266 4.266 18 C 0.109 3.891 19 O -0.113 6.113 20 C -0.466 4.466 21 H 0.126 0.874 22 C -0.139 4.139 23 N -0.509 5.509 24 Si 0.734 3.266 25 H -0.198 1.198 26 H -0.207 1.207 27 H -0.186 1.186 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.229 0.771 39 H 0.241 0.759 40 H 0.162 0.838 41 H 0.142 0.858 42 H 0.166 0.834 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.805 7.182 -1.087 19.230 hybrid contribution 0.394 -0.260 -1.372 1.451 sum -17.411 6.922 -2.459 18.897 Atomic orbital electron populations 1.23836 0.95925 1.01792 1.01717 1.22922 0.95996 0.98499 0.99332 1.21105 0.98116 0.96214 0.98615 1.20840 0.87264 0.86567 0.98933 0.89098 1.21995 0.99604 0.96248 0.99512 1.21781 1.00279 1.00875 0.97217 1.45174 1.42942 1.43291 1.08243 1.15842 0.79591 0.79102 0.84918 1.90892 1.67697 1.64077 1.22673 1.42239 1.38647 1.40142 1.10686 1.16645 0.87838 1.08811 0.88268 1.20678 1.00273 0.96215 0.89913 1.20558 0.93247 1.10283 1.00043 1.17471 0.90099 0.98546 0.83142 1.91425 1.79443 1.86886 1.55055 1.20964 1.02857 1.11713 0.91103 1.18543 0.89023 0.95456 0.86076 1.83521 1.29964 1.71445 1.26394 1.20772 0.85915 1.42110 0.97835 0.87397 1.24469 0.95319 0.95866 0.98208 1.69641 1.11259 1.43258 1.26785 0.86160 0.80453 0.79138 0.80870 1.19847 1.20700 1.18625 0.88579 0.88649 0.87272 0.89890 0.90357 0.91983 0.91465 0.92186 0.91896 0.93967 0.77132 0.75874 0.83753 0.85801 0.83401 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.48 14.32 29.02 0.42 -1.07 16 2 C -0.15 -1.22 9.25 -36.02 -0.33 -1.55 16 3 C -0.10 -0.76 5.20 -27.88 -0.15 -0.91 16 4 C 0.17 1.68 2.24 -67.94 -0.15 1.53 16 5 H 0.09 1.07 7.58 -51.93 -0.39 0.67 16 6 C -0.13 -1.36 5.61 -26.73 -0.15 -1.51 16 7 C -0.14 -1.89 8.51 37.15 0.32 -1.57 16 8 N -0.74 -8.43 4.73 -58.68 -0.28 -8.70 16 9 C 0.70 10.78 6.98 -86.92 -0.61 10.18 16 10 O -0.58 -10.13 10.89 5.28 0.06 -10.07 16 11 N -0.67 -11.09 5.20 -14.07 -0.07 -11.16 16 12 C 0.08 1.53 6.33 -83.44 -0.53 1.00 16 13 C -0.05 -0.91 8.69 -39.43 -0.34 -1.25 16 14 C -0.22 -3.95 10.02 -39.48 -0.40 -4.35 16 15 C 0.13 2.50 7.29 -39.43 -0.29 2.22 16 16 F -0.15 -2.87 17.26 2.25 0.04 -2.83 16 17 C -0.25 -5.30 9.14 -39.36 -0.36 -5.66 16 18 C 0.16 3.58 6.66 -38.94 -0.26 3.32 16 19 O -0.21 -5.01 8.15 0.03 0.00 -5.01 16 20 C -0.39 -10.38 9.95 30.88 0.31 -10.07 16 21 H 0.11 2.98 5.44 -52.48 -0.29 2.70 16 22 C 0.07 1.74 5.49 -17.52 -0.10 1.64 16 23 N -0.87 -24.15 13.96 55.48 0.77 -23.38 16 24 Si 0.91 19.99 28.62 -169.99 -4.86 15.12 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 28 H 0.10 0.68 8.06 -52.49 -0.42 0.25 16 29 H 0.10 0.62 7.84 -52.49 -0.41 0.21 16 30 H 0.11 0.94 8.03 -52.49 -0.42 0.52 16 31 H 0.08 0.52 7.79 -51.93 -0.40 0.12 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.83 7.84 -51.93 -0.41 0.42 16 36 H 0.06 1.01 5.65 -51.92 -0.29 0.72 16 37 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.39 3.71 8.62 -40.82 -0.35 3.36 16 39 H 0.41 6.21 8.59 -40.82 -0.35 5.86 16 40 H 0.14 2.53 6.19 -52.48 -0.32 2.21 16 41 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.15 3.35 5.64 -52.49 -0.30 3.06 16 43 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -28.86 362.02 -7.12 -35.97 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -5.61 Total: 12.66 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -2.62 Total: -8.06 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.42 Total: -43.24 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.06 Total: -15.08 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.86 Total: 15.12 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.86 -7.12 -35.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799219996.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.699 kcal (2) G-P(sol) polarization free energy of solvation -28.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds