Wall clock time and date at job start Tue Mar 31 2020 13:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99876 * 2 1 4 4 C 1.52995 * 109.47288 * 125.00584 * 3 2 1 5 5 H 1.09001 * 109.46986 * 304.99503 * 4 3 2 6 6 C 1.52999 * 109.47419 * 185.00136 * 4 3 2 7 7 C 1.52994 * 109.47694 * 174.99550 * 6 4 3 8 8 N 1.46496 * 109.47470 * 64.99501 * 4 3 2 9 9 C 1.34780 * 120.00425 * 205.00062 * 8 4 3 10 10 O 1.21592 * 119.99532 * 0.02562 * 9 8 4 11 11 N 1.34769 * 120.00403 * 180.02562 * 9 8 4 12 12 C 1.40133 * 119.99970 * 175.62985 * 11 9 8 13 13 C 1.38686 * 120.07867 * 34.59457 * 12 11 9 14 14 C 1.38202 * 120.02490 * 179.76698 * 13 12 11 15 15 C 1.38550 * 120.17011 * 0.51039 * 14 13 12 16 16 F 1.35102 * 119.92015 * 179.76816 * 15 14 13 17 17 C 1.38340 * 120.15420 * 359.74278 * 15 14 13 18 18 C 1.38739 * 119.97427 * 359.97438 * 17 15 14 19 19 O 1.35781 * 120.08566 * 179.97438 * 18 17 15 20 20 C 1.34802 * 117.00042 * 5.43376 * 19 18 17 21 21 H 1.08003 * 119.99881 * 354.95488 * 20 19 18 22 22 C 1.38638 * 120.00245 * 174.95035 * 20 19 18 23 23 N 1.31567 * 120.00451 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99839 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47442 * 89.99517 * 24 22 20 26 26 H 1.48498 * 109.47006 * 209.99874 * 24 22 20 27 27 H 1.48502 * 109.46900 * 329.99626 * 24 22 20 28 28 H 1.07997 * 119.99959 * 180.02562 * 1 2 3 29 29 H 1.07996 * 119.99819 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00443 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47140 * 5.00083 * 3 2 1 32 32 H 1.09005 * 109.47065 * 245.00003 * 3 2 1 33 33 H 1.09006 * 109.46799 * 294.99675 * 6 4 3 34 34 H 1.09005 * 109.46961 * 54.99110 * 6 4 3 35 35 H 1.08996 * 109.47072 * 299.99914 * 7 6 4 36 36 H 1.09010 * 109.46911 * 59.99438 * 7 6 4 37 37 H 1.08996 * 109.47403 * 179.97438 * 7 6 4 38 38 H 0.97000 * 120.00086 * 25.00408 * 8 4 3 39 39 H 0.97008 * 119.99878 * 355.62923 * 11 9 8 40 40 H 1.08005 * 119.99001 * 0.02562 * 13 12 11 41 41 H 1.08000 * 119.91695 * 180.23263 * 14 13 12 42 42 H 1.07999 * 120.01244 * 180.02562 * 17 15 14 43 43 H 0.96997 * 120.00220 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0351 1.3332 1.1815 5 1 2.4884 1.1470 2.1059 6 6 3.7092 2.7047 1.2552 7 6 4.5857 2.7757 2.5071 8 7 4.0547 0.2970 1.0000 9 6 4.6913 -0.2170 2.0710 10 8 4.4191 0.1791 3.1879 11 7 5.6297 -1.1699 1.9040 12 6 6.3561 -1.6387 3.0068 13 6 5.7475 -1.7373 4.2491 14 6 6.4636 -2.2044 5.3349 15 6 7.7932 -2.5655 5.1889 16 9 8.4898 -3.0171 6.2548 17 6 8.4090 -2.4652 3.9542 18 6 7.6943 -2.0026 2.8587 19 8 8.2966 -1.9027 1.6459 20 6 9.5557 -2.3741 1.5472 21 1 10.0690 -2.7318 2.4276 22 6 10.1917 -2.3998 0.3156 23 7 11.4208 -2.8593 0.2193 24 14 9.3042 -1.7806 -1.2071 25 1 9.5694 -0.3296 -1.3789 26 1 9.7937 -2.5179 -2.3995 27 1 7.8439 -2.0020 -1.0531 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5399 0.9353 0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6213 1.4027 -0.9314 33 1 4.3274 2.8536 0.3698 34 1 2.9467 3.4823 1.3008 35 1 3.9675 2.6267 3.3924 36 1 5.3482 1.9980 2.4614 37 1 5.0663 3.7526 2.5593 38 1 4.2716 -0.0192 0.1090 39 1 5.8022 -1.5311 1.0204 40 1 4.7123 -1.4528 4.3672 41 1 5.9868 -2.2839 6.3007 42 1 9.4455 -2.7477 3.8429 43 1 11.8659 -2.8770 -0.6423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799219996.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:26 Heat of formation + Delta-G solvation = -75.782405 kcal Electronic energy + Delta-G solvation = -27334.238130 eV Core-core repulsion = 23294.689971 eV Total energy + Delta-G solvation = -4039.548159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.84973 -41.85296 -40.65379 -38.58713 -37.61353 -35.56275 -34.69337 -34.47374 -33.18595 -31.21557 -30.18441 -29.17360 -27.31007 -24.86811 -24.22785 -23.32583 -22.21823 -21.58130 -20.53755 -20.12668 -19.80148 -19.29974 -18.32403 -17.30673 -17.07107 -16.81754 -16.66303 -16.47579 -16.01775 -15.87746 -15.63294 -15.27727 -15.22873 -14.97414 -14.69692 -14.54938 -14.25379 -14.11775 -13.81666 -13.57158 -13.38235 -13.06996 -12.66077 -12.57401 -12.45553 -12.32828 -12.23446 -12.13222 -11.78592 -11.69553 -11.63687 -11.22018 -10.95749 -10.92071 -10.23104 -9.92380 -9.59868 -8.79328 -8.51645 -6.26008 0.18467 0.41560 1.32893 1.38641 1.44378 1.50860 1.64259 2.12167 2.26219 2.63664 2.82650 2.99873 3.21578 3.38481 3.78653 3.91781 4.03111 4.15062 4.17558 4.29364 4.32559 4.40165 4.53770 4.58042 4.68750 4.86045 4.91328 4.96207 5.07446 5.09288 5.11892 5.15867 5.18310 5.25599 5.31160 5.46712 5.53945 5.60163 5.65898 5.81002 5.82065 5.90746 5.99320 6.11790 6.80071 7.00781 7.41680 7.57634 8.59395 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009966 B = 0.004387 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.907689 B = 6381.233352 C = 8187.275477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.164 4.164 3 C -0.092 4.092 4 C 0.170 3.830 5 H 0.074 0.926 6 C -0.130 4.130 7 C -0.141 4.141 8 N -0.725 5.725 9 C 0.704 3.296 10 O -0.599 6.599 11 N -0.672 5.672 12 C 0.094 3.906 13 C -0.049 4.049 14 C -0.193 4.193 15 C 0.116 3.884 16 F -0.147 7.147 17 C -0.257 4.257 18 C 0.138 3.862 19 O -0.219 6.219 20 C -0.402 4.402 21 H 0.078 0.922 22 C 0.012 3.988 23 N -0.921 5.921 24 Si 0.973 3.027 25 H -0.270 1.270 26 H -0.273 1.273 27 H -0.242 1.242 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.047 0.953 36 H 0.029 0.971 37 H 0.047 0.953 38 H 0.407 0.593 39 H 0.413 0.587 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.125 0.875 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.130 8.224 -2.655 22.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.182 4.182 3 C -0.130 4.130 4 C 0.065 3.935 5 H 0.092 0.908 6 C -0.169 4.169 7 C -0.199 4.199 8 N -0.380 5.380 9 C 0.405 3.595 10 O -0.478 6.478 11 N -0.319 5.319 12 C -0.002 4.002 13 C -0.070 4.070 14 C -0.213 4.213 15 C 0.096 3.904 16 F -0.126 7.126 17 C -0.278 4.278 18 C 0.086 3.914 19 O -0.126 6.126 20 C -0.478 4.478 21 H 0.096 0.904 22 C -0.187 4.187 23 N -0.560 5.560 24 Si 0.794 3.206 25 H -0.195 1.195 26 H -0.198 1.198 27 H -0.165 1.165 28 H 0.115 0.885 29 H 0.126 0.874 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.243 0.757 39 H 0.249 0.751 40 H 0.177 0.823 41 H 0.177 0.823 42 H 0.143 0.857 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.297 8.662 -2.009 23.078 hybrid contribution 1.297 -0.695 -0.838 1.693 sum -20.000 7.966 -2.847 21.715 Atomic orbital electron populations 1.24005 0.95884 1.02549 1.00652 1.22965 0.96327 0.98581 1.00319 1.21051 0.97698 0.96454 0.97754 1.20953 0.87042 0.85894 0.99583 0.90800 1.21985 0.99842 0.96982 0.98054 1.21719 0.99741 0.99969 0.98435 1.45141 1.42231 1.42817 1.07840 1.15942 0.79320 0.78754 0.85504 1.90870 1.68376 1.64640 1.23922 1.42255 1.38704 1.40689 1.10281 1.16781 0.86922 1.06925 0.89589 1.20913 1.00862 0.95791 0.89417 1.20948 0.91990 1.06931 1.01418 1.17513 0.90910 0.99445 0.82534 1.91429 1.79585 1.86923 1.54650 1.20962 1.02149 1.12273 0.92431 1.18861 0.90142 0.96835 0.85595 1.83471 1.28782 1.73013 1.27312 1.20655 0.87140 1.42686 0.97347 0.90430 1.25345 0.96009 0.95982 1.01358 1.69741 1.13004 1.45437 1.27840 0.85194 0.80279 0.78468 0.76687 1.19531 1.19790 1.16500 0.88459 0.87393 0.88131 0.88072 0.89036 0.91221 0.88914 0.93430 0.95154 0.93348 0.75682 0.75124 0.82305 0.82330 0.85693 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.40 14.32 67.78 0.97 -1.43 16 2 C -0.16 -2.22 9.25 25.65 0.24 -1.99 16 3 C -0.09 -1.03 5.20 29.85 0.16 -0.88 16 4 C 0.17 2.91 2.24 44.99 0.10 3.02 16 5 H 0.07 1.58 7.58 -2.39 -0.02 1.56 16 6 C -0.13 -2.24 5.61 30.59 0.17 -2.07 16 7 C -0.14 -3.50 8.51 71.98 0.61 -2.89 16 8 N -0.72 -14.84 4.73 -457.83 -2.16 -17.00 16 9 C 0.70 20.40 6.98 179.06 1.25 21.65 16 10 O -0.60 -20.20 10.89 -4.01 -0.04 -20.24 16 11 N -0.67 -21.33 5.20 -316.71 -1.65 -22.98 16 12 C 0.09 3.54 6.33 38.22 0.24 3.78 16 13 C -0.05 -1.69 8.69 22.37 0.19 -1.50 16 14 C -0.19 -6.46 10.02 22.34 0.22 -6.24 16 15 C 0.12 4.52 7.29 22.37 0.16 4.68 16 16 F -0.15 -5.59 17.26 44.97 0.78 -4.82 16 17 C -0.26 -11.52 9.14 22.41 0.20 -11.31 16 18 C 0.14 6.15 6.66 22.69 0.15 6.30 16 19 O -0.22 -10.78 8.15 -22.80 -0.19 -10.96 16 20 C -0.40 -22.38 9.95 67.92 0.68 -21.71 16 21 H 0.08 4.65 5.44 -2.91 -0.02 4.63 16 22 C 0.01 0.67 5.49 84.83 0.47 1.13 16 23 N -0.92 -53.07 13.96 21.61 0.30 -52.77 16 24 Si 0.97 41.20 28.62 68.60 1.96 43.16 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.24 -9.30 7.11 99.48 0.71 -8.60 16 28 H 0.10 1.16 8.06 -2.91 -0.02 1.13 16 29 H 0.11 1.05 7.84 -2.91 -0.02 1.03 16 30 H 0.10 1.52 8.03 -2.91 -0.02 1.50 16 31 H 0.10 0.83 7.79 -2.39 -0.02 0.81 16 32 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.05 1.27 7.84 -2.39 -0.02 1.25 16 36 H 0.03 0.94 5.65 -2.38 -0.01 0.92 16 37 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.41 6.52 8.62 -92.71 -0.80 5.73 16 39 H 0.41 11.99 8.59 -92.70 -0.80 11.19 16 40 H 0.16 5.14 6.19 -2.91 -0.02 5.12 16 41 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 42 H 0.13 6.14 5.64 -2.91 -0.02 6.12 16 43 H 0.29 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -65.10 362.02 4.28 -60.81 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: -0.54 Total: 34.26 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 5.82 Total: -9.45 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -3.51 Total: -92.75 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.23 Total: -31.21 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.78 Total: -4.82 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.96 Total: 43.16 kcal Total: -65.10 4.28 -60.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799219996.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.968 kcal (2) G-P(sol) polarization free energy of solvation -65.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds