Wall clock time and date at job start Tue Mar 31 2020 13:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46972 * 2 1 4 4 H 1.09003 * 109.46991 * 304.99924 * 3 2 1 5 5 N 1.46501 * 109.47215 * 64.99999 * 3 2 1 6 6 C 1.34773 * 119.99775 * 205.00228 * 5 3 2 7 7 O 1.21597 * 120.00297 * 0.02562 * 6 5 3 8 8 N 1.34784 * 119.99775 * 179.97438 * 6 5 3 9 9 C 1.40135 * 119.99664 * 185.65910 * 8 6 5 10 10 C 1.38693 * 120.07546 * 34.00107 * 9 8 6 11 11 C 1.38204 * 120.01860 * 179.97438 * 10 9 8 12 12 C 1.38540 * 120.17469 * 0.02562 * 11 10 9 13 13 F 1.35100 * 119.92310 * 179.97438 * 12 11 10 14 14 C 1.38342 * 120.15315 * 0.03810 * 12 11 10 15 15 C 1.38738 * 119.97852 * 359.93721 * 14 12 11 16 16 O 1.35779 * 120.08765 * 180.31484 * 15 14 12 17 17 C 1.34798 * 117.00167 * 354.12648 * 16 15 14 18 18 H 1.08002 * 120.00130 * 354.48248 * 17 16 15 19 19 C 1.38635 * 120.00282 * 174.47393 * 17 16 15 20 20 N 1.31573 * 119.99894 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00407 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47391 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47325 * 120.00198 * 21 19 17 24 24 H 1.48506 * 109.47566 * 240.00459 * 21 19 17 25 25 C 1.53000 * 109.47445 * 185.00397 * 3 2 1 26 26 C 1.52994 * 117.49542 * 248.74589 * 25 3 2 27 27 C 1.52991 * 117.50050 * 180.08584 * 25 3 2 28 28 H 1.09003 * 109.46939 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47283 * 299.99972 * 1 2 3 30 30 H 1.08997 * 109.47363 * 60.00546 * 1 2 3 31 31 H 1.09000 * 109.47283 * 240.00028 * 2 1 3 32 32 H 1.08997 * 109.47363 * 119.99454 * 2 1 3 33 33 H 0.96999 * 119.99611 * 24.99846 * 5 3 2 34 34 H 0.96993 * 119.99562 * 5.66671 * 8 6 5 35 35 H 1.07994 * 119.99108 * 359.97268 * 10 9 8 36 36 H 1.07997 * 119.90803 * 180.02562 * 11 10 9 37 37 H 1.08006 * 120.01493 * 180.02562 * 14 12 11 38 38 H 0.97001 * 120.00612 * 179.97438 * 20 19 17 39 39 H 1.08998 * 115.55022 * 34.41311 * 25 3 2 40 40 H 1.09001 * 117.50438 * 359.97438 * 26 25 3 41 41 H 1.09007 * 117.50223 * 145.01643 * 26 25 3 42 42 H 1.08997 * 117.50188 * 214.97553 * 27 25 3 43 43 H 1.09001 * 117.49992 * 359.97438 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 7 1.6524 2.0975 1.2518 6 6 1.5255 3.4384 1.2995 7 8 1.7322 4.1046 0.3034 8 7 1.1684 4.0410 2.4511 9 6 0.9209 5.4202 2.4727 10 6 0.3549 6.0421 1.3698 11 6 0.1108 7.4023 1.3926 12 6 0.4307 8.1484 2.5152 13 9 0.1905 9.4778 2.5318 14 6 0.9968 7.5356 3.6188 15 6 1.2441 6.1705 3.6030 16 8 1.7937 5.5657 4.6873 17 6 2.1880 6.3642 5.6992 18 1 2.1432 7.4377 5.5890 19 6 2.6508 5.8076 6.8816 20 7 2.7057 4.4999 7.0158 21 14 3.1964 6.9140 8.2841 22 1 3.0369 8.3354 7.8843 23 1 2.3634 6.6411 9.4828 24 1 4.6223 6.6456 8.6006 25 6 3.5648 1.4445 -0.1258 26 6 4.3733 1.9004 1.0904 27 6 4.2705 2.8018 -0.1424 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.4870 1.5661 2.0462 34 1 1.0829 3.5200 3.2647 35 1 0.1047 5.4634 0.4930 36 1 -0.3304 7.8847 0.5330 37 1 1.2450 8.1194 4.4930 38 1 3.0299 4.1103 7.8428 39 1 3.9867 0.6503 -0.7417 40 1 3.8190 2.1994 1.9801 41 1 5.3274 1.4064 1.2745 42 1 5.1569 2.9006 -0.7689 43 1 3.6485 3.6935 -0.0641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821861531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:12 Heat of formation + Delta-G solvation = -50.628766 kcal Electronic energy + Delta-G solvation = -27556.484172 eV Core-core repulsion = 23518.026756 eV Total energy + Delta-G solvation = -4038.457416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.23365 -40.51443 -39.11922 -37.55327 -36.21356 -34.61691 -33.98789 -32.41024 -32.16043 -29.40251 -28.31500 -26.74448 -25.49123 -22.71377 -22.33008 -21.83645 -21.65866 -20.64108 -19.88471 -18.33486 -18.26098 -17.59020 -16.72657 -16.36853 -15.53262 -15.37720 -15.22316 -14.95963 -14.48386 -14.28152 -14.13113 -14.01019 -13.80981 -13.55999 -13.48000 -13.16572 -12.88607 -12.39270 -12.29800 -12.13342 -11.65092 -11.53320 -11.46365 -11.39055 -11.26530 -11.09006 -10.94956 -10.71172 -10.51455 -10.16631 -9.87849 -9.78107 -9.75498 -9.43888 -8.96636 -8.83816 -7.86752 -7.07258 -6.60560 -4.17659 1.86286 2.13359 2.91958 3.05722 3.08320 3.13527 3.45725 3.85074 3.98244 4.36199 4.44470 4.62385 4.87655 4.88434 4.95704 4.95893 5.12896 5.17306 5.19379 5.30582 5.49526 5.59067 5.63559 5.67031 5.75709 5.79090 5.91556 5.97093 6.02865 6.08753 6.12364 6.21483 6.33629 6.52479 6.62523 6.68775 6.71777 6.92709 6.93572 7.09095 7.17103 7.33132 7.67183 7.84076 8.28686 8.85300 8.89259 9.47709 10.56729 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010703 B = 0.004217 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.573473 B = 6637.864815 C = 8259.720667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.195 3.805 4 H 0.091 0.909 5 N -0.738 5.738 6 C 0.705 3.295 7 O -0.580 6.580 8 N -0.666 5.666 9 C 0.083 3.917 10 C -0.050 4.050 11 C -0.227 4.227 12 C 0.127 3.873 13 F -0.152 7.152 14 C -0.257 4.257 15 C 0.157 3.843 16 O -0.169 6.169 17 C -0.390 4.390 18 H 0.094 0.906 19 C 0.043 3.957 20 N -0.860 5.860 21 Si 0.941 3.059 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.175 4.175 26 C -0.174 4.174 27 C -0.183 4.183 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.397 0.603 34 H 0.410 0.590 35 H 0.136 0.864 36 H 0.122 0.878 37 H 0.142 0.858 38 H 0.271 0.729 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.313 -8.032 -10.088 13.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C 0.090 3.910 4 H 0.109 0.891 5 N -0.394 5.394 6 C 0.406 3.594 7 O -0.458 6.458 8 N -0.313 5.313 9 C -0.012 4.012 10 C -0.071 4.071 11 C -0.247 4.247 12 C 0.107 3.893 13 F -0.131 7.131 14 C -0.278 4.278 15 C 0.100 3.900 16 O -0.072 6.072 17 C -0.466 4.466 18 H 0.112 0.888 19 C -0.162 4.162 20 N -0.494 5.494 21 Si 0.766 3.234 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.201 1.201 25 C -0.195 4.195 26 C -0.211 4.211 27 C -0.220 4.220 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.231 0.769 34 H 0.246 0.754 35 H 0.154 0.846 36 H 0.140 0.860 37 H 0.160 0.840 38 H 0.081 0.919 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.019 -7.846 -10.759 13.468 hybrid contribution 0.329 0.307 1.599 1.661 sum -1.690 -7.538 -9.161 11.983 Atomic orbital electron populations 1.21772 0.95298 1.01498 1.02418 1.21777 0.96372 0.95360 1.02992 1.20322 0.91683 0.92449 0.86557 0.89062 1.45179 1.74960 1.05266 1.13989 1.15873 0.77752 0.81941 0.83826 1.90835 1.57093 1.63447 1.34455 1.42246 1.70990 1.07162 1.10881 1.16597 1.07663 0.82158 0.94812 1.20480 0.95867 0.93653 0.97069 1.20447 1.11598 0.94253 0.98412 1.17440 0.99849 0.76712 0.95284 1.91409 1.92506 1.32095 1.97062 1.20855 1.11393 0.95318 1.00272 1.18816 0.92359 0.89997 0.88785 1.83931 1.65949 1.34935 1.22365 1.21380 1.42873 0.90422 0.91935 0.88848 1.25268 0.96650 0.96589 0.97688 1.70014 1.42807 1.09717 1.26891 0.85630 0.78562 0.79455 0.79767 1.18939 1.20040 1.20053 1.22789 0.94227 0.99276 1.03167 1.22905 1.00886 1.04208 0.93146 1.23365 1.02459 0.95705 1.00451 0.92724 0.92379 0.92599 0.90495 0.91267 0.76911 0.75402 0.84596 0.86001 0.84005 0.91928 0.87787 0.88575 0.89614 0.89888 0.85926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.80 37.16 0.36 -0.88 16 2 C -0.13 -1.04 5.46 -26.73 -0.15 -1.19 16 3 C 0.20 2.18 2.43 -67.93 -0.17 2.01 16 4 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 5 N -0.74 -9.26 3.07 -58.67 -0.18 -9.44 16 6 C 0.70 11.66 7.13 -86.91 -0.62 11.04 16 7 O -0.58 -11.00 11.12 5.28 0.06 -10.94 16 8 N -0.67 -11.96 5.21 -14.07 -0.07 -12.03 16 9 C 0.08 1.69 6.29 -83.44 -0.52 1.17 16 10 C -0.05 -0.95 8.65 -39.43 -0.34 -1.29 16 11 C -0.23 -4.20 10.02 -39.48 -0.40 -4.60 16 12 C 0.13 2.54 7.29 -39.43 -0.29 2.26 16 13 F -0.15 -2.92 17.26 2.25 0.04 -2.88 16 14 C -0.26 -5.63 9.11 -39.36 -0.36 -5.98 16 15 C 0.16 3.59 6.66 -38.94 -0.26 3.33 16 16 O -0.17 -4.38 9.30 0.05 0.00 -4.38 16 17 C -0.39 -10.27 9.44 30.88 0.29 -9.98 16 18 H 0.09 2.33 5.30 -52.49 -0.28 2.06 16 19 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 20 N -0.86 -23.35 13.67 55.48 0.76 -22.59 16 21 Si 0.94 19.72 29.55 -169.99 -5.02 14.70 16 22 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 25 C -0.18 -2.05 5.71 -90.63 -0.52 -2.57 16 26 C -0.17 -2.36 9.74 -26.70 -0.26 -2.62 16 27 C -0.18 -2.64 9.82 -26.70 -0.26 -2.90 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.52 7.75 -51.93 -0.40 0.11 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.40 4.29 8.62 -40.82 -0.35 3.93 16 34 H 0.41 7.08 8.57 -40.82 -0.35 6.73 16 35 H 0.14 2.48 6.47 -52.49 -0.34 2.14 16 36 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 37 H 0.14 3.11 5.71 -52.48 -0.30 2.81 16 38 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 39 H 0.10 1.03 8.11 -51.93 -0.42 0.61 16 40 H 0.10 1.47 6.67 -51.93 -0.35 1.13 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.12 2.17 5.01 -51.93 -0.26 1.91 16 LS Contribution 358.56 15.07 5.40 5.40 Total: -1.00 -29.03 358.56 -8.13 -37.16 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -5.54 Total: 16.20 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -3.58 Total: -11.19 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.51 Total: -44.07 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.06 Total: -15.32 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.03 -8.13 -37.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821861531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.465 kcal (2) G-P(sol) polarization free energy of solvation -29.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds