Wall clock time and date at job start Tue Mar 31 2020 13:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46972 * 2 1 4 4 H 1.09003 * 109.46991 * 304.99924 * 3 2 1 5 5 N 1.46501 * 109.47215 * 64.99999 * 3 2 1 6 6 C 1.34773 * 119.99775 * 205.00228 * 5 3 2 7 7 O 1.21597 * 120.00297 * 0.02562 * 6 5 3 8 8 N 1.34784 * 119.99775 * 179.97438 * 6 5 3 9 9 C 1.40135 * 119.99664 * 185.65910 * 8 6 5 10 10 C 1.38693 * 120.07546 * 34.00107 * 9 8 6 11 11 C 1.38204 * 120.01860 * 179.97438 * 10 9 8 12 12 C 1.38540 * 120.17469 * 0.02562 * 11 10 9 13 13 F 1.35100 * 119.92310 * 179.97438 * 12 11 10 14 14 C 1.38342 * 120.15315 * 0.03810 * 12 11 10 15 15 C 1.38738 * 119.97852 * 359.93721 * 14 12 11 16 16 O 1.35779 * 120.08765 * 180.31484 * 15 14 12 17 17 C 1.34798 * 117.00167 * 354.12648 * 16 15 14 18 18 H 1.08002 * 120.00130 * 354.48248 * 17 16 15 19 19 C 1.38635 * 120.00282 * 174.47393 * 17 16 15 20 20 N 1.31573 * 119.99894 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00407 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47391 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47325 * 120.00198 * 21 19 17 24 24 H 1.48506 * 109.47566 * 240.00459 * 21 19 17 25 25 C 1.53000 * 109.47445 * 185.00397 * 3 2 1 26 26 C 1.52994 * 117.49542 * 248.74589 * 25 3 2 27 27 C 1.52991 * 117.50050 * 180.08584 * 25 3 2 28 28 H 1.09003 * 109.46939 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47283 * 299.99972 * 1 2 3 30 30 H 1.08997 * 109.47363 * 60.00546 * 1 2 3 31 31 H 1.09000 * 109.47283 * 240.00028 * 2 1 3 32 32 H 1.08997 * 109.47363 * 119.99454 * 2 1 3 33 33 H 0.96999 * 119.99611 * 24.99846 * 5 3 2 34 34 H 0.96993 * 119.99562 * 5.66671 * 8 6 5 35 35 H 1.07994 * 119.99108 * 359.97268 * 10 9 8 36 36 H 1.07997 * 119.90803 * 180.02562 * 11 10 9 37 37 H 1.08006 * 120.01493 * 180.02562 * 14 12 11 38 38 H 0.97001 * 120.00612 * 179.97438 * 20 19 17 39 39 H 1.08998 * 115.55022 * 34.41311 * 25 3 2 40 40 H 1.09001 * 117.50438 * 359.97438 * 26 25 3 41 41 H 1.09007 * 117.50223 * 145.01643 * 26 25 3 42 42 H 1.08997 * 117.50188 * 214.97553 * 27 25 3 43 43 H 1.09001 * 117.49992 * 359.97438 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 7 1.6524 2.0975 1.2518 6 6 1.5255 3.4384 1.2995 7 8 1.7322 4.1046 0.3034 8 7 1.1684 4.0410 2.4511 9 6 0.9209 5.4202 2.4727 10 6 0.3549 6.0421 1.3698 11 6 0.1108 7.4023 1.3926 12 6 0.4307 8.1484 2.5152 13 9 0.1905 9.4778 2.5318 14 6 0.9968 7.5356 3.6188 15 6 1.2441 6.1705 3.6030 16 8 1.7937 5.5657 4.6873 17 6 2.1880 6.3642 5.6992 18 1 2.1432 7.4377 5.5890 19 6 2.6508 5.8076 6.8816 20 7 2.7057 4.4999 7.0158 21 14 3.1964 6.9140 8.2841 22 1 3.0369 8.3354 7.8843 23 1 2.3634 6.6411 9.4828 24 1 4.6223 6.6456 8.6006 25 6 3.5648 1.4445 -0.1258 26 6 4.3733 1.9004 1.0904 27 6 4.2705 2.8018 -0.1424 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.4870 1.5661 2.0462 34 1 1.0829 3.5200 3.2647 35 1 0.1047 5.4634 0.4930 36 1 -0.3304 7.8847 0.5330 37 1 1.2450 8.1194 4.4930 38 1 3.0299 4.1103 7.8428 39 1 3.9867 0.6503 -0.7417 40 1 3.8190 2.1994 1.9801 41 1 5.3274 1.4064 1.2745 42 1 5.1569 2.9006 -0.7689 43 1 3.6485 3.6935 -0.0641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821861531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:11 Heat of formation + Delta-G solvation = -66.800585 kcal Electronic energy + Delta-G solvation = -27557.185435 eV Core-core repulsion = 23518.026756 eV Total energy + Delta-G solvation = -4039.158678 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.82206 -41.88500 -40.67411 -38.88119 -37.81236 -35.65093 -35.43171 -34.30829 -33.17955 -31.07030 -29.82304 -27.77076 -27.34795 -24.25616 -23.42561 -23.34579 -22.58308 -22.04535 -20.94803 -20.13745 -19.70891 -19.17347 -18.20947 -17.54498 -17.07577 -16.89316 -16.63111 -16.55092 -15.98429 -15.66392 -15.58333 -15.26273 -15.14523 -15.03363 -14.95108 -14.47557 -14.02099 -13.81715 -13.68114 -13.42551 -13.23496 -13.05006 -12.65562 -12.54766 -12.32684 -12.22712 -12.19345 -12.13104 -11.80761 -11.66319 -11.34752 -11.14609 -10.96014 -10.83137 -10.78544 -9.99015 -9.54600 -8.71280 -8.51661 -6.16876 0.22165 0.47132 1.36612 1.42107 1.52421 1.64897 2.08062 2.13704 2.69463 2.91248 3.05835 3.17108 3.23657 3.46452 3.68974 3.94550 3.99282 4.09295 4.17068 4.26311 4.28958 4.36422 4.42076 4.58601 4.66886 4.80799 4.83684 4.93070 4.93950 5.01723 5.07072 5.15298 5.18598 5.23110 5.27007 5.31760 5.34610 5.39969 5.46420 5.59616 5.66161 5.92530 5.96093 6.10296 6.93437 6.98962 7.52649 7.64508 8.69251 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010703 B = 0.004217 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.573473 B = 6637.864815 C = 8259.720667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.191 3.809 4 H 0.078 0.922 5 N -0.722 5.722 6 C 0.705 3.295 7 O -0.603 6.603 8 N -0.669 5.669 9 C 0.086 3.914 10 C -0.050 4.050 11 C -0.202 4.202 12 C 0.120 3.880 13 F -0.145 7.145 14 C -0.264 4.264 15 C 0.129 3.871 16 O -0.202 6.202 17 C -0.414 4.414 18 H 0.097 0.903 19 C -0.008 4.008 20 N -0.905 5.905 21 Si 1.010 2.990 22 H -0.258 1.258 23 H -0.266 1.266 24 H -0.270 1.270 25 C -0.149 4.149 26 C -0.180 4.180 27 C -0.205 4.205 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.407 0.593 34 H 0.411 0.589 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.134 0.866 38 H 0.274 0.726 39 H 0.135 0.865 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.584 -8.817 -11.491 14.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C 0.086 3.914 4 H 0.096 0.904 5 N -0.377 5.377 6 C 0.406 3.594 7 O -0.483 6.483 8 N -0.316 5.316 9 C -0.010 4.010 10 C -0.071 4.071 11 C -0.221 4.221 12 C 0.100 3.900 13 F -0.124 7.124 14 C -0.285 4.285 15 C 0.075 3.925 16 O -0.108 6.108 17 C -0.490 4.490 18 H 0.114 0.886 19 C -0.208 4.208 20 N -0.541 5.541 21 Si 0.830 3.170 22 H -0.181 1.181 23 H -0.191 1.191 24 H -0.195 1.195 25 C -0.168 4.168 26 C -0.218 4.218 27 C -0.242 4.242 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.097 0.903 33 H 0.243 0.757 34 H 0.247 0.753 35 H 0.167 0.833 36 H 0.175 0.825 37 H 0.152 0.848 38 H 0.084 0.916 39 H 0.153 0.847 40 H 0.091 0.909 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.310 -8.654 -12.201 15.136 hybrid contribution 0.324 0.573 1.779 1.896 sum -1.986 -8.081 -10.423 13.337 Atomic orbital electron populations 1.21768 0.95260 1.02286 1.01640 1.21748 0.96283 0.92947 1.04503 1.20549 0.91529 0.94119 0.85165 0.90368 1.45140 1.73611 1.03816 1.15141 1.15973 0.77488 0.83054 0.82914 1.90818 1.58091 1.64352 1.35041 1.42285 1.71350 1.06430 1.11553 1.16856 1.06520 0.83302 0.94323 1.20687 0.95449 0.94090 0.96840 1.20847 1.08905 0.93834 0.98548 1.17438 1.00206 0.77148 0.95240 1.91424 1.92430 1.31521 1.97027 1.20925 1.11570 0.95104 1.00851 1.19178 0.93462 0.90826 0.89039 1.83905 1.68087 1.35507 1.23262 1.21742 1.43774 0.90850 0.92622 0.88593 1.26345 0.96459 0.98085 0.99883 1.70118 1.44682 1.11463 1.27871 0.84637 0.78230 0.77736 0.76375 1.18118 1.19133 1.19457 1.22940 0.94199 0.98106 1.01584 1.22870 1.01857 1.04563 0.92486 1.23270 1.03252 0.95831 1.01808 0.91168 0.93518 0.93058 0.88294 0.90335 0.75740 0.75278 0.83317 0.82487 0.84811 0.91649 0.84721 0.90877 0.88179 0.88713 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.80 71.98 0.71 -1.43 16 2 C -0.12 -1.57 5.46 30.59 0.17 -1.41 16 3 C 0.19 3.94 2.43 44.99 0.11 4.05 16 4 H 0.08 1.89 7.58 -2.39 -0.02 1.88 16 5 N -0.72 -17.76 3.07 -457.79 -1.41 -19.17 16 6 C 0.70 23.49 7.13 179.05 1.28 24.76 16 7 O -0.60 -22.95 11.12 -4.02 -0.04 -23.00 16 8 N -0.67 -24.64 5.21 -316.68 -1.65 -26.29 16 9 C 0.09 3.56 6.29 38.22 0.24 3.80 16 10 C -0.05 -1.85 8.65 22.37 0.19 -1.65 16 11 C -0.20 -7.04 10.02 22.33 0.22 -6.82 16 12 C 0.12 4.68 7.29 22.37 0.16 4.84 16 13 F -0.15 -5.37 17.26 44.97 0.78 -4.60 16 14 C -0.26 -11.74 9.11 22.41 0.20 -11.53 16 15 C 0.13 6.10 6.66 22.68 0.15 6.25 16 16 O -0.20 -11.02 9.30 -22.74 -0.21 -11.23 16 17 C -0.41 -22.69 9.44 67.91 0.64 -22.05 16 18 H 0.10 4.99 5.30 -2.91 -0.02 4.98 16 19 C -0.01 -0.43 5.49 84.83 0.47 0.04 16 20 N -0.90 -50.88 13.67 21.61 0.30 -50.59 16 21 Si 1.01 41.07 29.55 68.60 2.03 43.10 16 22 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 23 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 24 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 25 C -0.15 -3.20 5.71 -10.80 -0.06 -3.26 16 26 C -0.18 -4.76 9.74 30.61 0.30 -4.46 16 27 C -0.20 -5.82 9.82 30.61 0.30 -5.52 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.76 7.75 -2.39 -0.02 0.74 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.41 8.57 8.62 -92.71 -0.80 7.77 16 34 H 0.41 14.83 8.57 -92.71 -0.79 14.03 16 35 H 0.15 5.20 6.47 -2.91 -0.02 5.18 16 36 H 0.16 4.41 8.06 -2.91 -0.02 4.39 16 37 H 0.13 6.08 5.71 -2.91 -0.02 6.06 16 38 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 39 H 0.14 2.13 8.11 -2.39 -0.02 2.11 16 40 H 0.07 2.27 6.67 -2.39 -0.02 2.26 16 41 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 42 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.09 3.20 5.01 -2.39 -0.01 3.19 16 Total: -1.00 -65.20 358.56 4.35 -60.86 By element: Atomic # 1 Polarization: 45.83 SS G_CDS: -0.52 Total: 45.31 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 5.08 Total: -14.39 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -2.76 Total: -96.05 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.26 Total: -34.23 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.78 Total: -4.60 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -65.20 4.35 -60.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821861531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.944 kcal (2) G-P(sol) polarization free energy of solvation -65.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds