Wall clock time and date at job start Tue Mar 31 2020 13:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47118 * 2 1 4 4 H 1.09008 * 115.56215 * 29.30815 * 3 2 1 5 5 C 1.53072 * 117.49649 * 243.60338 * 3 2 1 6 6 C 1.52996 * 117.49877 * 174.99818 * 3 2 1 7 7 H 1.08992 * 117.50142 * 359.97438 * 6 3 2 8 8 C 1.53004 * 117.49694 * 214.97911 * 6 3 2 9 9 N 1.46507 * 109.47087 * 175.09193 * 8 6 3 10 10 C 1.34767 * 120.00244 * 180.02562 * 9 8 6 11 11 O 1.21593 * 120.00022 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00403 * 179.97438 * 10 9 8 13 13 C 1.40134 * 120.00303 * 185.66647 * 12 10 9 14 14 C 1.38693 * 120.07474 * 24.76736 * 13 12 10 15 15 C 1.38194 * 120.02141 * 180.02562 * 14 13 12 16 16 C 1.38548 * 120.17631 * 0.02562 * 15 14 13 17 17 F 1.35095 * 119.92625 * 179.97438 * 16 15 14 18 18 C 1.38349 * 120.15048 * 359.95981 * 16 15 14 19 19 C 1.38736 * 119.97283 * 0.27157 * 18 16 15 20 20 O 1.35783 * 120.08718 * 179.74847 * 19 18 16 21 21 C 1.34808 * 116.99709 * 5.20045 * 20 19 18 22 22 H 1.07998 * 120.00004 * 354.98002 * 21 20 19 23 23 C 1.38631 * 120.00136 * 174.98232 * 21 20 19 24 24 N 1.31571 * 119.99873 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00403 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47054 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47645 * 119.99430 * 25 23 21 28 28 H 1.48497 * 109.47251 * 239.99974 * 25 23 21 29 29 H 1.08998 * 109.46629 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46781 * 300.00142 * 1 2 3 31 31 H 1.09004 * 109.47033 * 60.00200 * 1 2 3 32 32 H 1.09000 * 109.47278 * 239.99784 * 2 1 3 33 33 H 1.09004 * 109.47033 * 119.99800 * 2 1 3 34 34 H 1.08997 * 117.51482 * 145.03340 * 5 3 2 35 35 H 1.09000 * 117.50831 * 359.97438 * 5 3 2 36 36 H 1.08996 * 109.47427 * 55.08874 * 8 6 3 37 37 H 1.09007 * 109.47055 * 295.08570 * 8 6 3 38 38 H 0.97002 * 119.99816 * 359.97438 * 9 8 6 39 39 H 0.97002 * 119.99482 * 5.66332 * 12 10 9 40 40 H 1.08000 * 119.99047 * 359.97438 * 14 13 12 41 41 H 1.08000 * 119.91439 * 179.97438 * 15 14 13 42 42 H 1.07993 * 120.01354 * 180.02562 * 18 16 15 43 43 H 0.97003 * 120.00532 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1718 0.4814 5 6 2.8448 1.9076 -1.2162 6 6 3.5501 1.6579 0.1183 7 1 4.1803 0.7720 0.1966 8 6 4.0300 2.8804 0.9033 9 7 5.4912 2.8524 1.0055 10 6 6.1400 3.8363 1.6592 11 8 5.5126 4.7475 2.1639 12 7 7.4842 3.8103 1.7537 13 6 8.1505 4.7660 2.5325 14 6 7.4911 5.3910 3.5804 15 6 8.1491 6.3337 4.3473 16 6 9.4677 6.6579 4.0723 17 9 10.1060 7.5806 4.8250 18 6 10.1325 6.0387 3.0289 19 6 9.4765 5.0949 2.2520 20 8 10.1251 4.4895 1.2242 21 6 11.4357 4.7694 1.0779 22 1 11.9037 5.5091 1.7105 23 6 12.1827 4.1077 0.1156 24 7 11.6126 3.2062 -0.6547 25 14 13.9988 4.4950 -0.0866 26 1 14.3948 5.5374 0.8942 27 1 14.7965 3.2649 0.1487 28 1 14.2488 4.9913 -1.4637 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.7225 2.9427 -1.5350 35 1 3.0110 1.1858 -2.0159 36 1 3.5955 2.8640 1.9027 37 1 3.7193 3.7887 0.3868 38 1 5.9917 2.1254 0.6033 39 1 7.9904 3.1300 1.2827 40 1 6.4628 5.1415 3.7966 41 1 7.6338 6.8196 5.1626 42 1 11.1605 6.2928 2.8168 43 1 12.1352 2.7429 -1.3278 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836455814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:03 Heat of formation + Delta-G solvation = -58.231738 kcal Electronic energy + Delta-G solvation = -26095.603429 eV Core-core repulsion = 22056.816324 eV Total energy + Delta-G solvation = -4038.787105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.20698 -40.28748 -38.96242 -38.29191 -36.37624 -34.43714 -34.03716 -32.39476 -32.23223 -29.40327 -28.56496 -26.51146 -25.47318 -24.08509 -22.54483 -21.68647 -21.14893 -20.88838 -20.23148 -18.33978 -18.15731 -17.62320 -16.80513 -15.79704 -15.48051 -15.21470 -15.17497 -14.93641 -14.93076 -14.47692 -14.34679 -14.24464 -13.76499 -13.69496 -13.49302 -13.39982 -13.13095 -12.58816 -12.38735 -12.27683 -12.15365 -11.70875 -11.64306 -11.54460 -11.39485 -11.28836 -10.99635 -10.72958 -10.51782 -10.26603 -10.16551 -9.84457 -9.75504 -9.46093 -8.96001 -8.92857 -7.83283 -7.01386 -6.59501 -4.16921 1.89204 2.15286 2.85084 3.06072 3.08652 3.13884 3.43944 3.51249 3.85771 4.24788 4.40595 4.47423 4.55025 4.69986 4.86665 4.89148 4.97585 4.99938 5.04004 5.14908 5.15170 5.42421 5.50030 5.60851 5.62088 5.66817 5.68624 5.77082 5.77908 5.82564 5.96102 6.05419 6.07898 6.23133 6.52252 6.66579 6.69205 6.94153 6.98129 7.09825 7.17565 7.32937 7.69813 7.85160 8.27644 8.83695 8.87464 9.48661 10.57846 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012008 B = 0.002846 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.257504 B = 9834.605668 C =11988.361346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.141 4.141 4 H 0.107 0.893 5 C -0.171 4.171 6 C -0.165 4.165 7 H 0.111 0.889 8 C 0.172 3.828 9 N -0.744 5.744 10 C 0.703 3.297 11 O -0.585 6.585 12 N -0.663 5.663 13 C 0.085 3.915 14 C -0.063 4.063 15 C -0.223 4.223 16 C 0.122 3.878 17 F -0.152 7.152 18 C -0.255 4.255 19 C 0.153 3.847 20 O -0.172 6.172 21 C -0.391 4.391 22 H 0.095 0.905 23 C 0.042 3.958 24 N -0.861 5.861 25 Si 0.942 3.058 26 H -0.265 1.265 27 H -0.275 1.275 28 H -0.275 1.275 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.399 0.601 39 H 0.413 0.587 40 H 0.149 0.851 41 H 0.122 0.878 42 H 0.143 0.857 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.990 -6.082 0.704 16.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.160 4.160 4 H 0.125 0.875 5 C -0.208 4.208 6 C -0.184 4.184 7 H 0.129 0.871 8 C 0.048 3.952 9 N -0.400 5.400 10 C 0.404 3.596 11 O -0.464 6.464 12 N -0.309 5.309 13 C -0.011 4.011 14 C -0.084 4.084 15 C -0.244 4.244 16 C 0.102 3.898 17 F -0.131 7.131 18 C -0.276 4.276 19 C 0.097 3.903 20 O -0.075 6.075 21 C -0.467 4.467 22 H 0.112 0.888 23 C -0.163 4.163 24 N -0.496 5.496 25 Si 0.767 3.233 26 H -0.190 1.190 27 H -0.201 1.201 28 H -0.201 1.201 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.233 0.767 39 H 0.249 0.751 40 H 0.167 0.833 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.577 -5.581 0.787 16.565 hybrid contribution 1.664 -0.242 -0.514 1.758 sum -13.912 -5.823 0.274 15.084 Atomic orbital electron populations 1.21747 0.95428 1.01564 1.01977 1.21135 0.96008 0.94010 1.02082 1.22491 0.92696 0.98312 1.02467 0.87472 1.23278 1.03541 1.02677 0.91339 1.22575 0.95603 0.99886 1.00311 0.87132 1.20672 0.78731 0.96077 0.99717 1.45047 1.07341 1.27141 1.60474 1.15853 0.81700 0.82439 0.79613 1.90847 1.66625 1.36068 1.52877 1.42252 1.04750 1.32901 1.51028 1.16718 0.90202 0.98218 0.95928 1.20809 1.00349 0.95376 0.91856 1.20499 0.93599 1.05223 1.05053 1.17456 0.91000 0.89692 0.91605 1.91404 1.82291 1.64280 1.75143 1.20825 1.02665 1.04050 1.00066 1.18721 0.90763 0.92146 0.88683 1.83914 1.24170 1.59954 1.39454 1.21390 0.81550 1.23442 1.20269 0.88788 1.25269 1.00334 0.95380 0.95270 1.70015 1.36764 1.23298 1.19524 0.85619 0.80276 0.78691 0.78756 1.18960 1.20057 1.20083 0.92757 0.92607 0.92610 0.91816 0.91531 0.88503 0.88637 0.91278 0.91511 0.76724 0.75057 0.83340 0.85983 0.83975 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.87 37.16 0.37 -0.53 16 2 C -0.09 -0.63 6.22 -26.73 -0.17 -0.80 16 3 C -0.14 -1.07 5.46 -90.58 -0.49 -1.56 16 4 H 0.11 0.81 8.08 -51.92 -0.42 0.39 16 5 C -0.17 -1.38 9.83 -26.69 -0.26 -1.64 16 6 C -0.17 -1.42 5.57 -90.62 -0.50 -1.93 16 7 H 0.11 0.90 8.04 -51.93 -0.42 0.48 16 8 C 0.17 1.94 5.96 -4.04 -0.02 1.91 16 9 N -0.74 -9.75 5.56 -65.22 -0.36 -10.11 16 10 C 0.70 12.28 8.37 -86.93 -0.73 11.55 16 11 O -0.59 -11.78 13.51 5.28 0.07 -11.71 16 12 N -0.66 -12.40 5.29 -14.07 -0.07 -12.47 16 13 C 0.08 1.79 6.45 -83.44 -0.54 1.25 16 14 C -0.06 -1.25 8.71 -39.43 -0.34 -1.59 16 15 C -0.22 -4.25 10.02 -39.48 -0.40 -4.64 16 16 C 0.12 2.49 7.29 -39.43 -0.29 2.20 16 17 F -0.15 -2.96 17.26 2.25 0.04 -2.93 16 18 C -0.26 -5.64 9.14 -39.36 -0.36 -6.00 16 19 C 0.15 3.55 6.66 -38.94 -0.26 3.29 16 20 O -0.17 -4.49 9.18 0.01 0.00 -4.49 16 21 C -0.39 -10.32 9.49 30.88 0.29 -10.02 16 22 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 23 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 24 N -0.86 -23.45 13.67 55.48 0.76 -22.69 16 25 Si 0.94 19.74 29.55 -169.99 -5.02 14.72 16 26 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 27 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 28 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.41 7.88 -51.93 -0.41 0.00 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.80 8.03 -51.93 -0.42 0.38 16 35 H 0.10 0.71 8.03 -51.93 -0.42 0.29 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.81 7.88 -51.93 -0.41 0.40 16 38 H 0.40 4.39 8.42 -40.82 -0.34 4.05 16 39 H 0.41 7.44 8.37 -40.82 -0.34 7.09 16 40 H 0.15 2.88 5.78 -52.49 -0.30 2.58 16 41 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 42 H 0.14 3.14 5.63 -52.49 -0.30 2.84 16 43 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 368.29 15.07 5.55 5.55 Total: -1.00 -29.92 368.29 -8.56 -38.48 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -5.72 Total: 13.15 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -3.80 Total: -7.51 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.32 Total: -45.28 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.07 Total: -16.19 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.92 -8.56 -38.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836455814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.753 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds