Wall clock time and date at job start Tue Mar 31 2020 14:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87814 * 2 1 4 4 C 1.51161 * 109.79841 * 239.32061 * 2 1 3 5 5 S 1.75754 * 125.35842 * 49.96629 * 4 2 1 6 6 C 1.75735 * 91.04381 * 179.89340 * 5 4 2 7 7 C 1.32906 * 109.57876 * 0.09867 * 6 5 4 8 8 C 1.34633 * 124.54390 * 230.14052 * 4 2 1 9 9 C 1.52255 * 123.14503 * 0.27045 * 8 4 2 10 10 C 1.53010 * 109.17842 * 340.88394 * 9 8 4 11 11 N 1.47067 * 108.95033 * 46.96108 * 10 9 8 12 12 C 1.34779 * 121.09323 * 115.14703 * 11 10 9 13 13 O 1.21585 * 120.00203 * 184.04031 * 12 11 10 14 14 N 1.34776 * 120.00043 * 4.03437 * 12 11 10 15 15 C 1.46494 * 120.00286 * 175.69461 * 14 12 11 16 16 C 1.52996 * 109.47235 * 179.72646 * 15 14 12 17 17 C 1.53001 * 109.47548 * 300.00355 * 16 15 14 18 18 C 1.52999 * 109.47027 * 60.00632 * 16 15 14 19 19 C 1.50701 * 109.47188 * 180.02562 * 16 15 14 20 20 H 1.07997 * 120.00010 * 359.22977 * 19 16 15 21 21 C 1.37871 * 120.00183 * 179.22543 * 19 16 15 22 22 N 1.31517 * 120.00243 * 196.75999 * 21 19 16 23 23 Si 1.86806 * 120.00169 * 16.75961 * 21 19 16 24 24 H 1.48496 * 109.46743 * 84.57719 * 23 21 19 25 25 H 1.48496 * 109.47466 * 204.58159 * 23 21 19 26 26 H 1.48507 * 109.46609 * 324.58142 * 23 21 19 27 27 H 1.09003 * 109.46742 * 308.77725 * 1 2 3 28 28 H 1.08998 * 109.47016 * 68.77178 * 1 2 3 29 29 H 1.09000 * 109.46951 * 188.77387 * 1 2 3 30 30 H 1.08004 * 125.21134 * 180.10373 * 6 5 4 31 31 H 1.08001 * 122.11639 * 180.10261 * 7 6 5 32 32 H 1.08994 * 109.52082 * 220.97089 * 9 8 4 33 33 H 1.08998 * 109.51740 * 100.79361 * 9 8 4 34 34 H 1.08999 * 109.55435 * 287.11478 * 10 9 8 35 35 H 1.09001 * 109.55149 * 166.80400 * 10 9 8 36 36 H 0.97004 * 119.99973 * 355.42850 * 14 12 11 37 37 H 1.08997 * 109.47381 * 299.73200 * 15 14 12 38 38 H 1.09008 * 109.46662 * 59.72950 * 15 14 12 39 39 H 1.09002 * 109.46949 * 71.67678 * 17 16 15 40 40 H 1.08998 * 109.47366 * 191.67805 * 17 16 15 41 41 H 1.09001 * 109.46537 * 311.67839 * 17 16 15 42 42 H 1.08991 * 109.47482 * 59.99987 * 18 16 15 43 43 H 1.09004 * 109.47245 * 180.02562 * 18 16 15 44 44 H 1.08999 * 109.46858 * 299.99219 * 18 16 15 45 45 H 0.96999 * 119.99898 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9007 1.0251 0.0000 4 6 2.0420 -0.7257 -1.2232 5 16 1.5190 -0.4294 -2.8747 6 6 2.6126 -1.6662 -3.4770 7 6 3.2751 -2.2083 -2.4603 8 6 2.9693 -1.7015 -1.1996 9 6 3.6186 -2.2020 0.0834 10 6 3.4319 -1.1545 1.1831 11 7 2.0295 -0.7117 1.1877 12 6 1.2264 -0.9544 2.2425 13 8 0.0515 -0.6450 2.1960 14 7 1.7256 -1.5402 3.3488 15 6 0.8771 -1.7186 4.5296 16 6 1.6791 -2.4094 5.6343 17 6 2.1575 -3.7757 5.1390 18 6 2.8889 -1.5477 6.0012 19 6 0.8061 -2.5934 6.8488 20 1 -0.2146 -2.2406 6.8386 21 6 1.3103 -3.2122 7.9730 22 7 0.4915 -3.6695 8.8951 23 14 3.1564 -3.4013 8.1864 24 1 3.7154 -2.1610 8.7815 25 1 3.4359 -4.5507 9.0842 26 1 3.7855 -3.6426 6.8630 27 1 -0.3633 0.6437 0.8012 28 1 -0.3633 0.3721 -0.9579 29 1 -0.3633 -1.0156 0.1568 30 1 2.7286 -1.9433 -4.5144 31 1 4.0045 -2.9920 -2.6028 32 1 4.6827 -2.3657 -0.0867 33 1 3.1494 -3.1375 0.3881 34 1 4.0831 -0.3022 0.9894 35 1 3.6795 -1.5926 2.1500 36 1 2.6457 -1.8473 3.3619 37 1 0.5363 -0.7452 4.8825 38 1 0.0151 -2.3325 4.2682 39 1 2.9457 -3.6382 4.3987 40 1 2.5449 -4.3516 5.9795 41 1 1.3227 -4.3105 4.6860 42 1 2.5482 -0.5744 6.3541 43 1 3.4606 -2.0401 6.7880 44 1 3.5203 -1.4150 5.1227 45 1 0.8463 -4.1045 9.6861 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883687435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:27 Heat of formation + Delta-G solvation = 36.725773 kcal Electronic energy + Delta-G solvation = -25846.095382 eV Core-core repulsion = 22377.639119 eV Total energy + Delta-G solvation = -3468.456263 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.62078 -38.60301 -36.94008 -35.51853 -33.95334 -32.32903 -31.48970 -30.58220 -27.53834 -26.39598 -25.96865 -25.22037 -24.69285 -22.83410 -22.05389 -20.14055 -19.26028 -18.48509 -17.72712 -17.04739 -16.20967 -16.05738 -15.42472 -15.37489 -15.15634 -14.55321 -14.27333 -13.79395 -13.68040 -13.59310 -13.25174 -12.98272 -12.76186 -12.68447 -12.59816 -12.30882 -12.18953 -12.02858 -11.92230 -11.77990 -11.49555 -11.41411 -11.22939 -10.85701 -10.42673 -10.27510 -10.20240 -10.07376 -9.26645 -9.15475 -8.86043 -8.71915 -8.70407 -8.50844 -8.45066 -8.30495 -6.16192 -4.11708 0.77870 1.36031 1.77242 2.44670 2.80280 3.23295 3.30486 3.37720 3.47530 4.09807 4.35121 4.47971 4.52228 4.73528 4.94089 4.97984 5.12130 5.14242 5.18050 5.27904 5.34327 5.45794 5.67337 5.75569 5.76355 5.82883 6.03648 6.04450 6.08085 6.17517 6.24965 6.30237 6.35773 6.47164 6.53687 6.61228 6.65805 6.70994 6.83826 7.00602 7.13269 7.24435 7.43223 7.73250 8.23589 8.45719 8.89276 8.92494 9.48758 10.96891 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027225 B = 0.003084 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.223433 B = 9076.758991 C = 9653.936042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.237 3.763 3 H 0.082 0.918 4 C -0.191 4.191 5 S 0.115 5.885 6 C -0.220 4.220 7 C -0.127 4.127 8 C -0.100 4.100 9 C -0.074 4.074 10 C 0.112 3.888 11 N -0.630 5.630 12 C 0.707 3.293 13 O -0.583 6.583 14 N -0.738 5.738 15 C 0.160 3.840 16 C 0.030 3.970 17 C -0.138 4.138 18 C -0.147 4.147 19 C -0.514 4.514 20 H 0.077 0.923 21 C 0.077 3.923 22 N -0.888 5.888 23 Si 0.882 3.118 24 H -0.285 1.285 25 H -0.305 1.305 26 H -0.250 1.250 27 H 0.090 0.910 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.164 0.836 31 H 0.137 0.863 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.390 0.610 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.019 0.981 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.042 0.958 44 H 0.026 0.974 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.067 5.061 -23.322 25.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.131 3.869 3 H 0.100 0.900 4 C -0.310 4.310 5 S 0.379 5.621 6 C -0.355 4.355 7 C -0.157 4.157 8 C -0.112 4.112 9 C -0.115 4.115 10 C -0.012 4.012 11 N -0.370 5.370 12 C 0.409 3.591 13 O -0.462 6.462 14 N -0.394 5.394 15 C 0.037 3.963 16 C 0.028 3.972 17 C -0.195 4.195 18 C -0.204 4.204 19 C -0.552 4.552 20 H 0.095 0.905 21 C -0.126 4.126 22 N -0.525 5.525 23 Si 0.714 3.286 24 H -0.213 1.213 25 H -0.233 1.233 26 H -0.176 1.176 27 H 0.108 0.892 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.181 0.819 31 H 0.155 0.845 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.227 0.773 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.045 0.955 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.085 6.192 -23.827 25.617 hybrid contribution 2.647 -1.398 0.775 3.092 sum 9.732 4.794 -23.052 25.477 Atomic orbital electron populations 1.22208 0.91180 1.04935 1.00885 1.19504 0.95765 0.92831 0.78809 0.90026 1.25187 1.03468 1.04082 0.98229 1.84126 1.41782 1.38134 0.98023 1.25399 1.03505 1.03501 1.03143 1.20038 1.02249 1.02206 0.91233 1.19464 0.98797 0.97525 0.95399 1.20927 1.00565 0.98986 0.91006 1.21570 0.82836 0.97663 0.99153 1.47337 1.11068 1.61946 1.16605 1.15867 0.84548 0.78907 0.79796 1.90921 1.14661 1.58843 1.81759 1.45743 1.16345 1.63561 1.13784 1.21387 0.92595 1.00234 0.82074 1.18715 0.93113 0.91264 0.94087 1.22250 0.98704 0.99248 0.99337 1.22374 0.98458 1.00771 0.98774 1.20696 0.99234 1.39327 0.95956 0.90520 1.24955 0.97641 0.93981 0.96012 1.69981 1.34787 1.37010 1.10709 0.87344 0.87139 0.76597 0.77470 1.21290 1.23328 1.17563 0.89168 0.93903 0.91125 0.81880 0.84528 0.89489 0.89977 0.90706 0.89593 0.77314 0.92240 0.92002 0.96157 0.92710 0.93437 0.92825 0.93969 0.95460 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 7.61 37.16 0.28 -1.54 16 2 C 0.24 2.91 3.79 -68.48 -0.26 2.65 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.19 -2.15 5.85 -35.36 -0.21 -2.35 16 5 S 0.11 1.09 22.54 -107.50 -2.42 -1.34 16 6 C -0.22 -1.88 11.20 28.89 0.32 -1.56 16 7 C -0.13 -1.15 9.99 -41.04 -0.41 -1.56 16 8 C -0.10 -1.04 5.80 -104.74 -0.61 -1.65 16 9 C -0.07 -0.68 6.32 -27.11 -0.17 -0.85 16 10 C 0.11 1.12 6.35 -3.73 -0.02 1.09 16 11 N -0.63 -8.34 2.95 -171.88 -0.51 -8.85 16 12 C 0.71 11.84 8.16 -86.92 -0.71 11.13 16 13 O -0.58 -11.53 12.20 5.29 0.06 -11.47 16 14 N -0.74 -12.20 4.92 -65.23 -0.32 -12.53 16 15 C 0.16 3.20 4.48 -4.05 -0.02 3.18 16 16 C 0.03 0.64 0.50 -155.66 -0.08 0.56 16 17 C -0.14 -2.78 7.47 37.16 0.28 -2.51 16 18 C -0.15 -2.92 7.52 37.16 0.28 -2.64 16 19 C -0.51 -13.72 8.61 -34.44 -0.30 -14.02 16 20 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 21 C 0.08 2.12 5.26 -17.82 -0.09 2.03 16 22 N -0.89 -26.43 13.96 55.43 0.77 -25.65 16 23 Si 0.88 20.81 22.85 -169.99 -3.89 16.93 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.25 -5.33 4.68 56.52 0.26 -5.06 16 27 H 0.09 1.38 6.55 -51.93 -0.34 1.04 16 28 H 0.04 0.49 7.47 -51.93 -0.39 0.10 16 29 H 0.07 1.12 7.17 -51.93 -0.37 0.75 16 30 H 0.16 1.00 8.06 -52.48 -0.42 0.57 16 31 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.81 5.61 -51.93 -0.29 0.52 16 36 H 0.39 5.63 3.79 -40.82 -0.15 5.47 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.34 8.14 -51.92 -0.42 0.91 16 39 H 0.02 0.33 7.18 -51.93 -0.37 -0.04 16 40 H 0.05 1.18 4.36 -51.93 -0.23 0.95 16 41 H 0.05 0.96 8.10 -51.93 -0.42 0.54 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.04 0.89 2.33 -51.93 -0.12 0.77 16 44 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 346.07 15.07 5.22 5.22 Total: -1.00 -30.85 346.07 -9.33 -40.18 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.54 Total: 5.53 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -1.71 Total: -8.03 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -0.05 Total: -47.02 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.06 Total: -11.47 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -3.89 Total: 16.93 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.42 Total: -1.34 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.85 -9.33 -40.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883687435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.907 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds