Wall clock time and date at job start Tue Mar 31 2020 14:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87814 * 2 1 4 4 C 1.51161 * 109.79841 * 239.32061 * 2 1 3 5 5 S 1.75754 * 125.35842 * 49.96629 * 4 2 1 6 6 C 1.75735 * 91.04381 * 179.89340 * 5 4 2 7 7 C 1.32906 * 109.57876 * 0.09867 * 6 5 4 8 8 C 1.34633 * 124.54390 * 230.14052 * 4 2 1 9 9 C 1.52255 * 123.14503 * 0.27045 * 8 4 2 10 10 C 1.53010 * 109.17842 * 340.88394 * 9 8 4 11 11 N 1.47067 * 108.95033 * 46.96108 * 10 9 8 12 12 C 1.34779 * 121.09323 * 115.14703 * 11 10 9 13 13 O 1.21585 * 120.00203 * 184.04031 * 12 11 10 14 14 N 1.34776 * 120.00043 * 4.03437 * 12 11 10 15 15 C 1.46494 * 120.00286 * 175.69461 * 14 12 11 16 16 C 1.52996 * 109.47235 * 179.72646 * 15 14 12 17 17 C 1.53001 * 109.47548 * 300.00355 * 16 15 14 18 18 C 1.52999 * 109.47027 * 60.00632 * 16 15 14 19 19 C 1.50701 * 109.47188 * 180.02562 * 16 15 14 20 20 H 1.07997 * 120.00010 * 359.22977 * 19 16 15 21 21 C 1.37871 * 120.00183 * 179.22543 * 19 16 15 22 22 N 1.31517 * 120.00243 * 196.75999 * 21 19 16 23 23 Si 1.86806 * 120.00169 * 16.75961 * 21 19 16 24 24 H 1.48496 * 109.46743 * 84.57719 * 23 21 19 25 25 H 1.48496 * 109.47466 * 204.58159 * 23 21 19 26 26 H 1.48507 * 109.46609 * 324.58142 * 23 21 19 27 27 H 1.09003 * 109.46742 * 308.77725 * 1 2 3 28 28 H 1.08998 * 109.47016 * 68.77178 * 1 2 3 29 29 H 1.09000 * 109.46951 * 188.77387 * 1 2 3 30 30 H 1.08004 * 125.21134 * 180.10373 * 6 5 4 31 31 H 1.08001 * 122.11639 * 180.10261 * 7 6 5 32 32 H 1.08994 * 109.52082 * 220.97089 * 9 8 4 33 33 H 1.08998 * 109.51740 * 100.79361 * 9 8 4 34 34 H 1.08999 * 109.55435 * 287.11478 * 10 9 8 35 35 H 1.09001 * 109.55149 * 166.80400 * 10 9 8 36 36 H 0.97004 * 119.99973 * 355.42850 * 14 12 11 37 37 H 1.08997 * 109.47381 * 299.73200 * 15 14 12 38 38 H 1.09008 * 109.46662 * 59.72950 * 15 14 12 39 39 H 1.09002 * 109.46949 * 71.67678 * 17 16 15 40 40 H 1.08998 * 109.47366 * 191.67805 * 17 16 15 41 41 H 1.09001 * 109.46537 * 311.67839 * 17 16 15 42 42 H 1.08991 * 109.47482 * 59.99987 * 18 16 15 43 43 H 1.09004 * 109.47245 * 180.02562 * 18 16 15 44 44 H 1.08999 * 109.46858 * 299.99219 * 18 16 15 45 45 H 0.96999 * 119.99898 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9007 1.0251 0.0000 4 6 2.0420 -0.7257 -1.2232 5 16 1.5190 -0.4294 -2.8747 6 6 2.6126 -1.6662 -3.4770 7 6 3.2751 -2.2083 -2.4603 8 6 2.9693 -1.7015 -1.1996 9 6 3.6186 -2.2020 0.0834 10 6 3.4319 -1.1545 1.1831 11 7 2.0295 -0.7117 1.1877 12 6 1.2264 -0.9544 2.2425 13 8 0.0515 -0.6450 2.1960 14 7 1.7256 -1.5402 3.3488 15 6 0.8771 -1.7186 4.5296 16 6 1.6791 -2.4094 5.6343 17 6 2.1575 -3.7757 5.1390 18 6 2.8889 -1.5477 6.0012 19 6 0.8061 -2.5934 6.8488 20 1 -0.2146 -2.2406 6.8386 21 6 1.3103 -3.2122 7.9730 22 7 0.4915 -3.6695 8.8951 23 14 3.1564 -3.4013 8.1864 24 1 3.7154 -2.1610 8.7815 25 1 3.4359 -4.5507 9.0842 26 1 3.7855 -3.6426 6.8630 27 1 -0.3633 0.6437 0.8012 28 1 -0.3633 0.3721 -0.9579 29 1 -0.3633 -1.0156 0.1568 30 1 2.7286 -1.9433 -4.5144 31 1 4.0045 -2.9920 -2.6028 32 1 4.6827 -2.3657 -0.0867 33 1 3.1494 -3.1375 0.3881 34 1 4.0831 -0.3022 0.9894 35 1 3.6795 -1.5926 2.1500 36 1 2.6457 -1.8473 3.3619 37 1 0.5363 -0.7452 4.8825 38 1 0.0151 -2.3325 4.2682 39 1 2.9457 -3.6382 4.3987 40 1 2.5449 -4.3516 5.9795 41 1 1.3227 -4.3105 4.6860 42 1 2.5482 -0.5744 6.3541 43 1 3.4606 -2.0401 6.7880 44 1 3.5203 -1.4150 5.1227 45 1 0.8463 -4.1045 9.6861 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883687435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:26 Heat of formation + Delta-G solvation = 17.355188 kcal Electronic energy + Delta-G solvation = -25846.935353 eV Core-core repulsion = 22377.639119 eV Total energy + Delta-G solvation = -3469.296234 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.75462 -39.63387 -38.46343 -36.54231 -35.38007 -33.86903 -32.91256 -31.58592 -28.43912 -27.99537 -27.50181 -26.87872 -25.90755 -23.80278 -22.90223 -21.30139 -20.91437 -19.61454 -18.59291 -18.12222 -17.93295 -17.28506 -17.04257 -16.54533 -16.07880 -15.64936 -15.53907 -15.21975 -14.90453 -14.72688 -14.48003 -14.34790 -14.15417 -13.96561 -13.77660 -13.70936 -13.60740 -13.16773 -12.91210 -12.78508 -12.60589 -12.41830 -12.36795 -12.16526 -12.06915 -11.96581 -11.75015 -11.57705 -11.08323 -10.58427 -10.53783 -10.38373 -10.10060 -9.61606 -9.46062 -9.21501 -8.29422 -6.29549 0.06026 0.62522 1.08242 1.38266 1.40057 1.52682 1.67716 1.76265 2.17265 2.36763 2.95214 3.06948 3.63120 3.78426 3.94293 4.06860 4.10864 4.20033 4.30825 4.36748 4.42701 4.47034 4.51884 4.61674 4.69380 4.77704 4.84948 4.86026 4.87376 4.95016 4.96194 5.06511 5.08614 5.16759 5.19785 5.26406 5.41594 5.45023 5.53582 5.60326 5.63807 5.75488 5.82441 5.95823 6.33024 6.74168 7.02035 7.34534 7.61872 8.87953 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027225 B = 0.003084 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.223433 B = 9076.758991 C = 9653.936042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.235 3.765 3 H 0.094 0.906 4 C -0.219 4.219 5 S 0.109 5.891 6 C -0.212 4.212 7 C -0.138 4.138 8 C -0.102 4.102 9 C -0.072 4.072 10 C 0.104 3.896 11 N -0.624 5.624 12 C 0.703 3.297 13 O -0.622 6.622 14 N -0.726 5.726 15 C 0.178 3.822 16 C 0.030 3.970 17 C -0.137 4.137 18 C -0.146 4.146 19 C -0.521 4.521 20 H 0.026 0.974 21 C 0.018 3.982 22 N -0.945 5.945 23 Si 0.943 3.057 24 H -0.281 1.281 25 H -0.315 1.315 26 H -0.202 1.202 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.040 0.960 30 H 0.189 0.811 31 H 0.160 0.840 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.404 0.596 37 H 0.040 0.960 38 H 0.034 0.966 39 H 0.065 0.935 40 H 0.043 0.957 41 H 0.037 0.963 42 H 0.046 0.954 43 H 0.037 0.963 44 H 0.072 0.928 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.346 4.834 -26.164 29.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.130 3.870 3 H 0.111 0.889 4 C -0.337 4.337 5 S 0.374 5.626 6 C -0.347 4.347 7 C -0.168 4.168 8 C -0.114 4.114 9 C -0.112 4.112 10 C -0.018 4.018 11 N -0.362 5.362 12 C 0.404 3.596 13 O -0.503 6.503 14 N -0.385 5.385 15 C 0.054 3.946 16 C 0.029 3.971 17 C -0.194 4.194 18 C -0.202 4.202 19 C -0.559 4.559 20 H 0.044 0.956 21 C -0.180 4.180 22 N -0.584 5.584 23 Si 0.772 3.228 24 H -0.208 1.208 25 H -0.244 1.244 26 H -0.125 1.125 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.206 0.794 31 H 0.177 0.823 32 H 0.137 0.863 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.244 0.756 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.091 0.909 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.417 5.980 -26.738 29.682 hybrid contribution 1.168 -1.291 1.542 2.325 sum 12.585 4.689 -25.196 28.552 Atomic orbital electron populations 1.22002 0.92753 1.02494 1.00867 1.19512 0.94569 0.93688 0.79233 0.88859 1.25070 1.04866 1.05433 0.98304 1.84138 1.42332 1.38840 0.97310 1.25779 1.02229 1.02289 1.04410 1.20275 1.02968 1.02879 0.90631 1.19801 0.98206 0.96821 0.96618 1.20981 1.02313 0.98010 0.89895 1.21896 0.80781 0.98922 1.00208 1.47353 1.12140 1.61137 1.15606 1.16019 0.84384 0.78687 0.80468 1.90917 1.16672 1.60181 1.82557 1.45349 1.16448 1.63922 1.12733 1.20866 0.92196 0.98470 0.83089 1.18634 0.93311 0.93096 0.92106 1.22172 0.99803 0.97454 0.99964 1.22294 0.97720 0.99720 1.00492 1.21014 0.98076 1.38358 0.98458 0.95565 1.25865 1.03013 0.93648 0.95457 1.70144 1.37438 1.39078 1.11759 0.86356 0.80881 0.76206 0.79365 1.20816 1.24416 1.12541 0.91505 0.92131 0.94043 0.79399 0.82286 0.86336 0.90674 0.88646 0.88566 0.75606 0.94174 0.94716 0.91603 0.93780 0.94349 0.93500 0.94490 0.90928 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.42 7.61 71.98 0.55 -2.87 16 2 C 0.24 5.52 3.79 44.26 0.17 5.69 16 3 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 4 C -0.22 -4.47 5.85 25.01 0.15 -4.32 16 5 S 0.11 1.86 22.54 -56.49 -1.27 0.59 16 6 C -0.21 -2.93 11.20 66.65 0.75 -2.18 16 7 C -0.14 -2.00 9.99 21.35 0.21 -1.78 16 8 C -0.10 -1.80 5.80 -19.94 -0.12 -1.92 16 9 C -0.07 -1.02 6.32 30.35 0.19 -0.83 16 10 C 0.10 1.68 6.35 86.27 0.55 2.22 16 11 N -0.62 -15.37 2.95 -815.96 -2.41 -17.78 16 12 C 0.70 23.10 8.16 179.05 1.46 24.56 16 13 O -0.62 -25.42 12.20 -3.98 -0.05 -25.46 16 14 N -0.73 -22.79 4.92 -478.55 -2.36 -25.14 16 15 C 0.18 7.21 4.48 86.38 0.39 7.60 16 16 C 0.03 1.25 0.50 -52.93 -0.03 1.23 16 17 C -0.14 -5.13 7.47 71.98 0.54 -4.59 16 18 C -0.15 -5.29 7.52 71.98 0.54 -4.75 16 19 C -0.52 -28.78 8.61 25.60 0.22 -28.56 16 20 H 0.03 1.65 7.99 -2.91 -0.02 1.63 16 21 C 0.02 1.00 5.26 84.65 0.45 1.45 16 22 N -0.95 -58.67 13.96 21.45 0.30 -58.37 16 23 Si 0.94 42.06 22.85 68.60 1.57 43.62 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.31 -14.50 7.11 99.48 0.71 -13.80 16 26 H -0.20 -7.48 4.68 99.48 0.47 -7.01 16 27 H 0.07 2.14 6.55 -2.39 -0.02 2.13 16 28 H 0.06 1.39 7.47 -2.39 -0.02 1.38 16 29 H 0.04 1.37 7.17 -2.39 -0.02 1.35 16 30 H 0.19 1.56 8.06 -2.91 -0.02 1.53 16 31 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 32 H 0.12 0.96 8.14 -2.39 -0.02 0.95 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 1.34 5.61 -2.39 -0.01 1.32 16 36 H 0.40 10.05 3.79 -92.70 -0.35 9.70 16 37 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.07 1.87 7.18 -2.39 -0.02 1.85 16 40 H 0.04 1.75 4.36 -2.39 -0.01 1.74 16 41 H 0.04 1.49 8.10 -2.39 -0.02 1.47 16 42 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.04 1.40 2.33 -2.38 -0.01 1.39 16 44 H 0.07 1.98 6.86 -2.39 -0.02 1.97 16 45 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -72.27 346.07 2.21 -70.05 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.42 Total: 21.55 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 6.01 Total: -9.06 kcal Atomic # 7 Polarization: -96.83 SS G_CDS: -4.46 Total: -101.29 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.05 Total: -25.46 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.57 Total: 43.62 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.27 Total: 0.59 kcal Total: -72.27 2.21 -70.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883687435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.409 kcal (2) G-P(sol) polarization free energy of solvation -72.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds