Wall clock time and date at job start Tue Mar 31 2020 14:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 115.55001 * 2 1 4 4 C 1.53003 * 117.50008 * 214.33328 * 2 1 3 5 5 H 1.09000 * 117.49838 * 0.02622 * 4 2 1 6 6 C 1.50700 * 117.50077 * 145.01800 * 4 2 1 7 7 O 1.21267 * 119.99953 * 111.38472 * 6 4 2 8 8 N 1.34777 * 119.99938 * 291.39121 * 6 4 2 9 9 C 1.37203 * 120.00384 * 5.08706 * 8 6 4 10 10 H 1.08008 * 119.99943 * 49.42036 * 9 8 6 11 11 C 1.38894 * 120.00368 * 229.42942 * 9 8 6 12 12 N 1.31413 * 119.99808 * 14.00241 * 11 9 8 13 13 Si 1.86801 * 120.00319 * 194.01371 * 11 9 8 14 14 H 1.48501 * 109.46740 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47281 * 119.99394 * 13 11 9 16 16 H 1.48502 * 109.46814 * 239.99642 * 13 11 9 17 17 C 1.39432 * 119.99654 * 185.09083 * 8 6 4 18 18 C 1.39064 * 119.69470 * 184.99647 * 17 8 6 19 19 C 1.38383 * 119.09699 * 179.97438 * 18 17 8 20 20 C 1.38818 * 118.49386 * 0.02562 * 19 18 17 21 21 C 1.38145 * 119.31365 * 359.97438 * 20 19 18 22 22 N 1.31878 * 120.84944 * 359.97438 * 21 20 19 23 23 C 1.52994 * 59.99919 * 252.50841 * 4 2 1 24 24 H 1.09004 * 117.50123 * 107.49140 * 23 4 2 25 25 C 1.50701 * 117.49973 * 252.50574 * 23 4 2 26 26 C 1.38236 * 119.99712 * 59.73325 * 25 23 4 27 27 C 1.38234 * 119.99933 * 179.81237 * 26 25 23 28 28 C 1.38245 * 120.00085 * 0.41414 * 27 26 25 29 29 C 1.38238 * 119.99510 * 359.81435 * 28 27 26 30 30 C 1.38232 * 120.00360 * 359.97438 * 29 28 27 31 31 H 1.08998 * 109.46890 * 211.70544 * 1 2 3 32 32 H 1.09004 * 109.46949 * 331.70607 * 1 2 3 33 33 H 1.09001 * 109.47281 * 91.70944 * 1 2 3 34 34 H 0.97004 * 119.99908 * 174.91658 * 12 11 9 35 35 H 1.08001 * 120.44994 * 0.02648 * 18 17 8 36 36 H 1.08008 * 120.75177 * 180.02562 * 19 18 17 37 37 H 1.07999 * 120.34641 * 179.72195 * 20 19 18 38 38 H 1.08004 * 119.57931 * 179.97438 * 21 20 19 39 39 H 1.07996 * 119.99933 * 359.97438 * 26 25 23 40 40 H 1.07997 * 120.00644 * 180.20374 * 27 26 25 41 41 H 1.07994 * 120.00161 * 179.79625 * 28 27 26 42 42 H 1.08001 * 119.99580 * 179.97438 * 29 28 27 43 43 H 1.07997 * 119.99901 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7654 5 1 1.6112 -1.8577 -1.2694 6 6 3.5293 -0.7806 -1.4612 7 8 4.5750 -1.2430 -1.0574 8 7 3.5232 0.0377 -2.5321 9 6 2.3569 0.6439 -2.9257 10 1 1.7475 1.1641 -2.2015 11 6 1.9599 0.5884 -4.2556 12 7 2.5355 -0.2593 -5.0783 13 14 0.6079 1.7191 -4.8747 14 1 0.1263 2.5721 -3.7585 15 1 1.1410 2.5795 -5.9613 16 1 -0.5187 0.9041 -5.3961 17 6 4.7021 0.2682 -3.2400 18 6 4.7124 1.1928 -4.2787 19 6 5.8893 1.4123 -4.9726 20 6 7.0196 0.6963 -4.6027 21 6 6.9371 -0.2068 -3.5606 22 7 5.8017 -0.3944 -2.9165 23 6 2.2365 -1.1212 0.7645 24 1 1.6113 -1.8590 1.2676 25 6 3.5293 -0.7817 1.4605 26 6 4.1288 0.4451 1.2448 27 6 5.3127 0.7581 1.8862 28 6 5.9015 -0.1590 2.7366 29 6 5.3044 -1.3876 2.9486 30 6 4.1183 -1.6989 2.3106 31 1 -0.3633 -0.8743 0.5401 32 1 -0.3633 0.9049 0.4871 33 1 -0.3634 -0.0307 -1.0272 34 1 2.2092 -0.3505 -5.9873 35 1 3.8142 1.7329 -4.5396 36 1 5.9277 2.1245 -5.7837 37 1 7.9528 0.8407 -5.1268 38 1 7.8137 -0.7665 -3.2694 39 1 3.6709 1.1600 0.5772 40 1 5.7794 1.7178 1.7203 41 1 6.8281 0.0843 3.2352 42 1 5.7647 -2.1042 3.6127 43 1 3.6521 -2.6589 2.4759 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892471887.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:58 Heat of formation + Delta-G solvation = 77.501195 kcal Electronic energy + Delta-G solvation = -27624.055773 eV Core-core repulsion = 24021.923714 eV Total energy + Delta-G solvation = -3602.132059 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.12681 -39.11723 -37.78882 -36.17237 -34.96893 -32.07564 -31.01482 -30.71165 -30.39747 -29.26879 -27.87429 -25.26246 -24.20436 -22.58847 -22.29625 -21.97396 -20.99301 -19.64703 -18.97600 -17.99414 -16.74319 -15.83204 -15.59448 -15.10200 -14.89882 -14.71726 -14.65151 -14.17193 -14.09970 -13.54899 -13.38150 -13.24904 -12.97939 -12.75235 -12.48199 -12.34062 -12.16726 -12.00640 -11.95671 -11.68928 -11.40010 -11.29406 -10.97041 -10.78312 -10.63971 -10.58042 -10.47014 -10.03275 -9.55557 -9.34691 -8.88776 -8.82596 -8.67740 -8.43364 -8.08544 -7.80642 -6.95760 -6.45314 -4.43437 1.79747 1.87975 2.26198 2.45135 2.99174 3.10234 3.13115 3.76804 3.93776 4.00132 4.36752 4.52995 4.71803 4.94509 5.20598 5.21992 5.31727 5.38235 5.39376 5.47367 5.53091 5.65623 5.70817 5.72129 5.88001 6.00177 6.04788 6.07893 6.13149 6.17230 6.34005 6.36529 6.38953 6.48137 6.49802 6.53205 6.69872 6.84501 6.89193 6.94147 7.09894 7.11278 7.24690 7.29684 7.46089 7.57809 7.98719 8.26333 8.87823 8.93791 9.41095 9.84340 10.47575 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011413 B = 0.006148 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.831879 B = 4553.307809 C = 6368.354452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.123 4.123 3 H 0.107 0.893 4 C -0.124 4.124 5 H 0.125 0.875 6 C 0.517 3.483 7 O -0.503 6.503 8 N -0.382 5.382 9 C -0.358 4.358 10 H 0.101 0.899 11 C 0.054 3.946 12 N -0.843 5.843 13 Si 0.910 3.090 14 H -0.262 1.262 15 H -0.276 1.276 16 H -0.277 1.277 17 C 0.389 3.611 18 C -0.154 4.154 19 C -0.077 4.077 20 C -0.240 4.240 21 C 0.110 3.890 22 N -0.493 5.493 23 C -0.106 4.106 24 H 0.112 0.888 25 C -0.025 4.025 26 C -0.101 4.101 27 C -0.114 4.114 28 C -0.131 4.131 29 C -0.122 4.122 30 C -0.111 4.111 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.274 0.726 35 H 0.134 0.866 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.137 0.863 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 2.275 7.785 8.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.141 4.141 3 H 0.125 0.875 4 C -0.145 4.145 5 H 0.142 0.858 6 C 0.305 3.695 7 O -0.377 6.377 8 N -0.094 5.094 9 C -0.485 4.485 10 H 0.118 0.882 11 C -0.156 4.156 12 N -0.475 5.475 13 Si 0.735 3.265 14 H -0.186 1.186 15 H -0.201 1.201 16 H -0.203 1.203 17 C 0.158 3.842 18 C -0.178 4.178 19 C -0.103 4.103 20 C -0.263 4.263 21 C -0.050 4.050 22 N -0.209 5.209 23 C -0.125 4.125 24 H 0.130 0.870 25 C -0.025 4.025 26 C -0.119 4.119 27 C -0.132 4.132 28 C -0.149 4.149 29 C -0.140 4.140 30 C -0.129 4.129 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.152 0.848 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.154 0.846 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.290 1.356 8.545 8.657 hybrid contribution -0.658 0.949 -1.667 2.028 sum -0.948 2.305 6.878 7.316 Atomic orbital electron populations 1.21351 0.92547 1.01283 1.02412 1.22439 0.95164 0.94488 1.02054 0.87496 1.22148 0.98241 1.02577 0.91559 0.85764 1.19912 0.88842 0.78822 0.81907 1.90702 1.32234 1.50374 1.64389 1.41125 1.05360 1.38549 1.24326 1.19461 0.99314 1.35296 0.94433 0.88164 1.25578 0.97282 0.95896 0.96806 1.69981 1.39330 1.31055 1.07175 0.86123 0.80562 0.80340 0.79435 1.18633 1.20149 1.20278 1.18800 0.85661 0.89356 0.90337 1.21503 0.98395 1.00527 0.97418 1.21146 0.92672 0.98272 0.98258 1.21619 0.98930 1.03216 1.02514 1.22271 0.95150 0.95449 0.92086 1.67615 0.98444 1.25359 1.29468 1.21403 0.96140 1.02088 0.92833 0.86961 1.18956 0.94549 0.93656 0.95329 1.20911 0.95734 0.96625 0.98638 1.20967 0.95683 0.99318 0.97201 1.20960 0.99676 0.94507 0.99740 1.20946 0.95943 0.96704 1.00378 1.20774 0.96064 0.98473 0.97596 0.92810 0.92484 0.91325 0.91549 0.84818 0.86753 0.86967 0.84608 0.86804 0.86878 0.86919 0.86789 0.86720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 10.20 37.16 0.38 -1.22 16 2 C -0.12 -2.02 3.93 -90.62 -0.36 -2.37 16 3 H 0.11 1.86 5.94 -51.93 -0.31 1.55 16 4 C -0.12 -2.43 4.93 -91.77 -0.45 -2.88 16 5 H 0.12 2.38 8.14 -51.93 -0.42 1.96 16 6 C 0.52 12.42 5.97 -10.99 -0.07 12.36 16 7 O -0.50 -13.24 13.28 5.57 0.07 -13.16 16 8 N -0.38 -9.55 2.67 -60.71 -0.16 -9.71 16 9 C -0.36 -8.47 7.60 -14.90 -0.11 -8.58 16 10 H 0.10 2.23 6.28 -52.48 -0.33 1.90 16 11 C 0.05 1.27 3.31 -17.49 -0.06 1.22 16 12 N -0.84 -21.60 11.62 55.49 0.65 -20.95 16 13 Si 0.91 18.02 29.58 -169.99 -5.03 12.99 16 14 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 15 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 16 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 17 C 0.39 9.97 6.66 -154.64 -1.03 8.94 16 18 C -0.15 -3.64 7.79 -39.22 -0.31 -3.94 16 19 C -0.08 -1.58 10.17 -39.31 -0.40 -1.98 16 20 C -0.24 -4.66 10.11 -39.40 -0.40 -5.05 16 21 C 0.11 2.36 11.18 -17.57 -0.20 2.16 16 22 N -0.49 -12.57 7.92 -12.34 -0.10 -12.67 16 23 C -0.11 -1.76 5.68 -91.78 -0.52 -2.28 16 24 H 0.11 1.58 8.03 -51.93 -0.42 1.16 16 25 C -0.02 -0.44 4.22 -104.62 -0.44 -0.88 16 26 C -0.10 -1.86 7.63 -39.58 -0.30 -2.16 16 27 C -0.11 -1.92 10.05 -39.58 -0.40 -2.32 16 28 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 29 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 30 C -0.11 -1.81 9.74 -39.58 -0.39 -2.20 16 31 H 0.05 0.63 7.87 -51.93 -0.41 0.22 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.27 6.64 8.32 -40.82 -0.34 6.30 16 35 H 0.13 3.20 5.56 -52.49 -0.29 2.90 16 36 H 0.11 1.96 8.06 -52.48 -0.42 1.54 16 37 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.14 2.50 8.06 -52.48 -0.42 2.08 16 39 H 0.11 2.15 5.92 -52.49 -0.31 1.84 16 40 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 43 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 354.39 15.07 5.34 5.34 Total: -1.00 -30.26 354.39 -10.50 -40.76 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -5.43 Total: 13.26 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -5.84 Total: -15.86 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.39 Total: -43.33 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.07 Total: -13.16 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.26 -10.50 -40.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892471887.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.257 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds