Wall clock time and date at job start Tue Mar 31 2020 14:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 115.56918 * 2 1 4 4 C 1.53004 * 117.49591 * 145.69074 * 2 1 3 5 5 H 1.08994 * 117.51619 * 214.96532 * 4 2 1 6 6 C 1.50700 * 117.50111 * 0.02562 * 4 2 1 7 7 C 1.38236 * 119.99447 * 318.85655 * 6 4 2 8 8 C 1.38234 * 119.99719 * 179.74885 * 7 6 4 9 9 C 1.38236 * 120.00026 * 0.52457 * 8 7 6 10 10 C 1.38233 * 119.99714 * 359.74687 * 9 8 7 11 11 C 1.38229 * 120.00294 * 139.12698 * 6 4 2 12 12 C 1.53001 * 117.49645 * 214.31191 * 2 1 3 13 13 H 1.09001 * 117.50362 * 145.02569 * 12 2 1 14 14 C 1.50698 * 117.51955 * 359.97438 * 12 2 1 15 15 O 1.21272 * 120.00017 * 291.28562 * 14 12 2 16 16 N 1.34774 * 120.00241 * 111.28382 * 14 12 2 17 17 C 1.37217 * 119.99837 * 4.92835 * 16 14 12 18 18 H 1.08002 * 119.99741 * 353.48446 * 17 16 14 19 19 C 1.38889 * 119.99783 * 173.48998 * 17 16 14 20 20 N 1.31413 * 120.00564 * 6.19284 * 19 17 16 21 21 Si 1.86804 * 119.99772 * 186.19270 * 19 17 16 22 22 H 1.48508 * 109.46777 * 59.99906 * 21 19 17 23 23 H 1.48502 * 109.47383 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47313 * 300.00417 * 21 19 17 25 25 C 1.39426 * 120.00281 * 184.92480 * 16 14 12 26 26 C 1.39065 * 119.69778 * 275.08400 * 25 16 14 27 27 C 1.38385 * 119.09814 * 179.97438 * 26 25 16 28 28 C 1.38821 * 118.49164 * 359.97438 * 27 26 25 29 29 C 1.38148 * 119.31642 * 0.02562 * 28 27 26 30 30 N 1.31892 * 120.84514 * 359.73670 * 29 28 27 31 31 H 1.09002 * 109.47690 * 191.78452 * 1 2 3 32 32 H 1.09001 * 109.46947 * 311.78559 * 1 2 3 33 33 H 1.09005 * 109.47296 * 71.78044 * 1 2 3 34 34 H 1.08001 * 120.00274 * 359.97438 * 7 6 4 35 35 H 1.08008 * 120.00287 * 180.29532 * 8 7 6 36 36 H 1.08005 * 120.00211 * 179.77580 * 9 8 7 37 37 H 1.08004 * 119.99966 * 179.97438 * 10 9 8 38 38 H 1.07994 * 119.99816 * 0.02562 * 11 6 4 39 39 H 0.96998 * 120.00563 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.45066 * 0.02562 * 26 25 16 41 41 H 1.08004 * 120.75143 * 180.02562 * 27 26 25 42 42 H 1.07999 * 120.34619 * 180.02562 * 28 27 26 43 43 H 1.07996 * 119.58104 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2363 -1.1211 0.7650 5 1 3.1715 -0.8757 1.2682 6 6 1.3719 -2.1410 1.4603 7 6 0.2367 -1.7378 2.1382 8 6 -0.5591 -2.6740 2.7716 9 6 -0.2138 -4.0120 2.7363 10 6 0.9244 -4.4145 2.0631 11 6 1.7172 -3.4791 1.4249 12 6 2.2363 -1.1210 -0.7650 13 1 3.1715 -0.8753 -1.2683 14 6 1.3723 -2.1412 -1.4605 15 8 0.7127 -2.9226 -0.8087 16 7 1.3326 -2.1851 -2.8070 17 6 2.1541 -1.3702 -3.5445 18 1 2.7552 -0.6207 -3.0513 19 6 2.2123 -1.5092 -4.9252 20 7 1.3938 -2.3350 -5.5376 21 14 3.4541 -0.5222 -5.9117 22 1 4.8273 -0.8605 -5.4588 23 1 3.3140 -0.8499 -7.3534 24 1 3.2086 0.9280 -5.7071 25 6 0.4569 -3.0586 -3.4505 26 6 0.8378 -4.3779 -3.6707 27 6 -0.0413 -5.2343 -4.3101 28 6 -1.2759 -4.7400 -4.7082 29 6 -1.5881 -3.4179 -4.4569 30 7 -0.7317 -2.6260 -3.8412 31 1 -0.3634 -1.0060 0.2099 32 1 -0.3633 0.6848 0.7663 33 1 -0.3634 0.3213 -0.9762 34 1 -0.0305 -0.6919 2.1699 35 1 -1.4487 -2.3595 3.2973 36 1 -0.8336 -4.7431 3.2343 37 1 1.1945 -5.4599 2.0358 38 1 2.6066 -3.7934 0.8993 39 1 1.4342 -2.4318 -6.5019 40 1 1.8061 -4.7294 -3.3464 41 1 0.2268 -6.2642 -4.4945 42 1 -1.9850 -5.3822 -5.2092 43 1 -2.5475 -3.0289 -4.7644 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892471900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:02 Heat of formation + Delta-G solvation = 84.379418 kcal Electronic energy + Delta-G solvation = -27755.472417 eV Core-core repulsion = 24153.638620 eV Total energy + Delta-G solvation = -3601.833797 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.16877 -39.12501 -37.72947 -36.07795 -34.69354 -31.68860 -31.21810 -30.55371 -30.23128 -29.31548 -28.09569 -25.05513 -24.32039 -22.46099 -22.36571 -21.91321 -21.06594 -19.45957 -18.97514 -17.71676 -16.67889 -15.99366 -15.53157 -15.31701 -15.01814 -14.74063 -14.69724 -14.29240 -14.11867 -13.57571 -13.29254 -13.01803 -12.95943 -12.44268 -12.30759 -12.21985 -12.09419 -11.95529 -11.73792 -11.54432 -11.25823 -11.15142 -11.08433 -10.69341 -10.55518 -10.49476 -10.40299 -9.81979 -9.65924 -9.40983 -8.80700 -8.70508 -8.42969 -8.22464 -7.93595 -7.89790 -7.69709 -6.28363 -4.02219 1.94791 2.02190 2.36222 2.49821 3.07310 3.15245 3.16947 3.49630 3.94778 4.21391 4.34422 4.48632 4.98016 5.05288 5.10189 5.29976 5.34916 5.45993 5.48775 5.57018 5.63947 5.70581 5.73638 5.78679 5.99119 6.00937 6.09644 6.13029 6.19864 6.27459 6.30980 6.36881 6.45616 6.56308 6.58471 6.61236 6.76388 6.88315 7.00174 7.05073 7.17358 7.17652 7.21554 7.30356 7.46690 7.58609 7.84269 8.37050 8.98220 9.23284 9.41085 9.76479 10.60841 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012935 B = 0.005486 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.144815 B = 5102.505791 C = 6354.174935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.117 4.117 3 H 0.107 0.893 4 C -0.104 4.104 5 H 0.114 0.886 6 C -0.017 4.017 7 C -0.116 4.116 8 C -0.132 4.132 9 C -0.130 4.130 10 C -0.124 4.124 11 C -0.062 4.062 12 C -0.144 4.144 13 H 0.122 0.878 14 C 0.505 3.495 15 O -0.568 6.568 16 N -0.411 5.411 17 C -0.332 4.332 18 H 0.107 0.893 19 C 0.034 3.966 20 N -0.865 5.865 21 Si 0.931 3.069 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.273 1.273 25 C 0.473 3.527 26 C -0.143 4.143 27 C -0.076 4.076 28 C -0.211 4.211 29 C 0.115 3.885 30 N -0.484 5.484 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.273 0.727 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.111 -0.445 8.489 8.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.136 4.136 3 H 0.125 0.875 4 C -0.122 4.122 5 H 0.132 0.868 6 C -0.017 4.017 7 C -0.134 4.134 8 C -0.150 4.150 9 C -0.148 4.148 10 C -0.142 4.142 11 C -0.080 4.080 12 C -0.165 4.165 13 H 0.140 0.860 14 C 0.294 3.706 15 O -0.450 6.450 16 N -0.129 5.129 17 C -0.458 4.458 18 H 0.125 0.875 19 C -0.170 4.170 20 N -0.502 5.502 21 Si 0.758 3.242 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 C 0.247 3.753 26 C -0.166 4.166 27 C -0.102 4.102 28 C -0.232 4.232 29 C -0.044 4.044 30 N -0.196 5.196 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.136 0.864 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.086 0.914 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.468 -0.019 8.720 8.732 hybrid contribution 0.906 -0.304 -1.452 1.738 sum 0.438 -0.323 7.268 7.289 Atomic orbital electron populations 1.21715 0.92703 1.03550 1.01378 1.22283 0.95976 0.93308 1.02060 0.87531 1.21173 1.00041 0.98582 0.92400 0.86792 1.18741 0.94550 0.93125 0.95246 1.20975 0.94914 0.99318 0.98144 1.20889 0.99546 0.93469 1.01139 1.20899 0.97339 0.95718 1.00831 1.20888 0.95753 0.98688 0.98902 1.20625 0.99107 0.92340 0.95961 1.22248 1.01873 1.00047 0.92377 0.85996 1.19005 0.84503 0.85863 0.81184 1.90666 1.47193 1.42996 1.64168 1.41176 1.32409 1.35367 1.03959 1.19719 1.20066 1.16416 0.89612 0.87495 1.25241 0.97542 0.97197 0.97062 1.69457 1.35121 1.35410 1.10216 0.85911 0.80167 0.79607 0.78524 1.19819 1.20878 1.19810 1.17316 0.85901 0.86128 0.86002 1.21550 0.99426 0.94595 1.01019 1.21031 0.93776 0.98543 0.96881 1.21622 0.98109 0.97512 1.05923 1.22055 0.97223 0.90012 0.95093 1.67118 1.03736 1.37716 1.11078 0.89838 0.92881 0.92232 0.86448 0.87192 0.87337 0.87213 0.87284 0.91436 0.87145 0.86861 0.86917 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 7.59 37.15 0.28 -2.07 16 2 C -0.12 -1.90 6.35 -90.62 -0.58 -2.48 16 3 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 4 C -0.10 -1.66 5.89 -91.77 -0.54 -2.20 16 5 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 6 C -0.02 -0.29 3.28 -104.63 -0.34 -0.63 16 7 C -0.12 -1.88 7.32 -39.58 -0.29 -2.17 16 8 C -0.13 -2.04 10.05 -39.58 -0.40 -2.44 16 9 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 10 C -0.12 -2.04 10.05 -39.59 -0.40 -2.44 16 11 C -0.06 -1.10 7.44 -39.59 -0.29 -1.39 16 12 C -0.14 -2.71 5.15 -91.77 -0.47 -3.18 16 13 H 0.12 2.17 6.72 -51.93 -0.35 1.82 16 14 C 0.51 11.66 6.38 -10.99 -0.07 11.59 16 15 O -0.57 -13.83 11.56 5.56 0.06 -13.76 16 16 N -0.41 -10.35 2.74 -60.71 -0.17 -10.51 16 17 C -0.33 -8.28 9.34 -14.90 -0.14 -8.42 16 18 H 0.11 2.46 5.90 -52.49 -0.31 2.15 16 19 C 0.03 0.86 5.44 -17.49 -0.10 0.76 16 20 N -0.86 -22.71 9.77 55.49 0.54 -22.17 16 21 Si 0.93 19.51 29.56 -169.99 -5.02 14.49 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 C 0.47 12.10 2.93 -154.64 -0.45 11.64 16 26 C -0.14 -3.40 9.26 -39.22 -0.36 -3.76 16 27 C -0.08 -1.56 10.17 -39.31 -0.40 -1.96 16 28 C -0.21 -4.14 10.11 -39.40 -0.40 -4.54 16 29 C 0.11 2.49 11.18 -17.56 -0.20 2.29 16 30 N -0.48 -12.37 9.89 -12.34 -0.12 -12.49 16 31 H 0.08 1.65 4.28 -51.93 -0.22 1.42 16 32 H 0.05 0.75 7.54 -51.93 -0.39 0.35 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.12 1.73 5.95 -52.49 -0.31 1.41 16 35 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 36 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 37 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 38 H 0.11 1.91 8.06 -52.49 -0.42 1.48 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.11 2.57 8.06 -52.49 -0.42 2.15 16 41 H 0.11 1.92 8.06 -52.48 -0.42 1.50 16 42 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 43 H 0.13 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 350.38 15.07 5.28 5.28 Total: -1.00 -30.35 350.38 -10.34 -40.69 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -5.37 Total: 12.26 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -5.54 Total: -13.79 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.25 Total: -45.17 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.06 Total: -13.76 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.35 -10.34 -40.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892471900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.071 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds