Wall clock time and date at job start Tue Mar 31 2020 14:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 115.56161 * 2 1 4 4 C 1.53004 * 117.49444 * 214.30842 * 2 1 3 5 5 H 1.09000 * 117.50156 * 0.02562 * 4 2 1 6 6 C 1.50698 * 117.49249 * 145.02056 * 4 2 1 7 7 O 1.21277 * 120.00310 * 68.61410 * 6 4 2 8 8 N 1.34779 * 120.00233 * 248.60797 * 6 4 2 9 9 C 1.37207 * 119.99691 * 359.97438 * 8 6 4 10 10 H 1.08008 * 120.00118 * 47.83996 * 9 8 6 11 11 C 1.38895 * 120.00327 * 227.83596 * 9 8 6 12 12 N 1.31416 * 119.99655 * 18.05657 * 11 9 8 13 13 Si 1.86803 * 120.00101 * 198.05497 * 11 9 8 14 14 H 1.48497 * 109.47007 * 90.00169 * 13 11 9 15 15 H 1.48504 * 109.47019 * 209.99837 * 13 11 9 16 16 H 1.48491 * 109.47118 * 330.00193 * 13 11 9 17 17 C 1.39426 * 120.00052 * 180.02562 * 8 6 4 18 18 C 1.39068 * 119.69191 * 192.69883 * 17 8 6 19 19 C 1.38383 * 119.09620 * 180.02562 * 18 17 8 20 20 C 1.38825 * 118.49282 * 359.75564 * 19 18 17 21 21 C 1.38151 * 119.31219 * 0.48741 * 20 19 18 22 22 N 1.31884 * 120.84733 * 359.49728 * 21 20 19 23 23 C 1.53000 * 117.49630 * 145.68799 * 2 1 3 24 24 H 1.09000 * 117.49751 * 214.97355 * 23 2 1 25 25 C 1.50698 * 117.50167 * 359.97438 * 23 2 1 26 26 C 1.38226 * 120.00054 * 284.43429 * 25 23 2 27 27 C 1.38241 * 120.00037 * 179.80921 * 26 25 23 28 28 C 1.38236 * 119.99997 * 0.42011 * 27 26 25 29 29 C 1.38234 * 119.99607 * 359.81088 * 28 27 26 30 30 C 1.38231 * 120.00449 * 359.97438 * 29 28 27 31 31 H 1.09001 * 109.46845 * 200.68554 * 1 2 3 32 32 H 1.08997 * 109.47123 * 320.68242 * 1 2 3 33 33 H 1.09000 * 109.47144 * 80.68541 * 1 2 3 34 34 H 0.96998 * 119.99530 * 174.94671 * 12 11 9 35 35 H 1.07996 * 120.45536 * 0.03964 * 18 17 8 36 36 H 1.07999 * 120.75168 * 179.97438 * 19 18 17 37 37 H 1.08003 * 120.34838 * 180.27032 * 20 19 18 38 38 H 1.07999 * 119.57591 * 179.77762 * 21 20 19 39 39 H 1.07997 * 120.00163 * 0.02562 * 26 25 23 40 40 H 1.08000 * 120.00352 * 180.20984 * 27 26 25 41 41 H 1.07999 * 120.00675 * 179.79260 * 28 27 26 42 42 H 1.08009 * 119.99668 * 179.97438 * 29 28 27 43 43 H 1.08007 * 120.00332 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2364 -1.1211 -0.7650 5 1 1.6111 -1.8583 -1.2686 6 6 3.5292 -0.7812 -1.4608 7 8 4.5184 -0.5210 -0.8093 8 7 3.5862 -0.7665 -2.8073 9 6 2.4672 -1.0615 -3.5445 10 1 1.5239 -0.5930 -3.3054 11 6 2.5475 -1.9626 -4.5985 12 7 3.5651 -2.7902 -4.6792 13 14 1.2091 -1.9980 -5.9011 14 1 1.5626 -1.0633 -6.9995 15 1 1.0830 -3.3746 -6.4439 16 1 -0.0821 -1.5845 -5.2955 17 6 4.7824 -0.4525 -3.4511 18 6 4.7797 -0.1789 -4.8146 19 6 5.9741 0.1308 -5.4411 20 6 7.1336 0.1613 -4.6784 21 6 7.0633 -0.1262 -3.3290 22 7 5.9103 -0.4181 -2.7589 23 6 2.2364 -1.1210 0.7650 24 1 3.1715 -0.8752 1.2683 25 6 1.3720 -2.1403 1.4614 26 6 0.7316 -1.8126 2.6417 27 6 -0.0645 -2.7464 3.2784 28 6 -0.2132 -4.0105 2.7392 29 6 0.4311 -4.3396 1.5613 30 6 1.2236 -3.4046 0.9223 31 1 -0.3633 -0.9614 0.3630 32 1 -0.3633 0.7950 0.6511 33 1 -0.3633 0.1663 -1.0141 34 1 3.5850 -3.4681 -5.3727 35 1 3.8581 -0.2075 -5.3768 36 1 6.0029 0.3473 -6.4988 37 1 8.0815 0.4037 -5.1358 38 1 7.9633 -0.1073 -2.7323 39 1 0.8504 -0.8261 3.0647 40 1 -0.5676 -2.4893 4.1988 41 1 -0.8324 -4.7412 3.2383 42 1 0.3153 -5.3275 1.1403 43 1 1.7273 -3.6619 0.0022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892471907.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:06 Heat of formation + Delta-G solvation = 67.498440 kcal Electronic energy + Delta-G solvation = -26741.472704 eV Core-core repulsion = 23138.906893 eV Total energy + Delta-G solvation = -3602.565811 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.06743 -39.34631 -38.04887 -36.24570 -34.94070 -32.07288 -31.13512 -30.75360 -30.62490 -29.36969 -28.14604 -25.32647 -24.37545 -22.67365 -22.39047 -22.14796 -20.93424 -19.51998 -19.05206 -17.89670 -16.86957 -16.27782 -15.63170 -15.11211 -14.95605 -14.81510 -14.67480 -14.63156 -14.04144 -13.90163 -13.46753 -13.24169 -13.19005 -12.99693 -12.51771 -12.29746 -12.27028 -12.07861 -11.88958 -11.77066 -11.38935 -11.38466 -11.07393 -10.95635 -10.81807 -10.70144 -10.49332 -9.76194 -9.65172 -9.41169 -8.95318 -8.91918 -8.76177 -8.74690 -8.44076 -7.97341 -7.04292 -6.52627 -4.42548 1.50669 1.55950 2.18220 2.38082 2.99551 3.09905 3.11957 3.54436 3.87590 3.93799 4.22601 4.41023 4.65621 4.95680 5.05881 5.10368 5.17043 5.25725 5.32322 5.37197 5.49443 5.61269 5.64122 5.66660 5.76323 5.78676 6.00022 6.05234 6.07703 6.13953 6.18317 6.24329 6.28590 6.29852 6.44979 6.52273 6.63947 6.68810 6.72662 6.77311 6.86223 7.02773 7.16223 7.18181 7.26272 7.51424 7.94854 8.21059 8.84203 8.90185 9.34401 9.79290 10.44388 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013672 B = 0.004262 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.416502 B = 6568.304454 C = 7664.060741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.119 4.119 3 H 0.105 0.895 4 C -0.137 4.137 5 H 0.130 0.870 6 C 0.518 3.482 7 O -0.526 6.526 8 N -0.380 5.380 9 C -0.368 4.368 10 H 0.099 0.901 11 C 0.059 3.941 12 N -0.837 5.837 13 Si 0.913 3.087 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.264 1.264 17 C 0.395 3.605 18 C -0.165 4.165 19 C -0.073 4.073 20 C -0.240 4.240 21 C 0.114 3.886 22 N -0.494 5.494 23 C -0.101 4.101 24 H 0.123 0.877 25 C -0.037 4.037 26 C -0.112 4.112 27 C -0.124 4.124 28 C -0.131 4.131 29 C -0.119 4.119 30 C -0.110 4.110 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.276 0.724 35 H 0.132 0.868 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.204 1.194 6.113 8.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.138 4.138 3 H 0.123 0.877 4 C -0.158 4.158 5 H 0.148 0.852 6 C 0.307 3.693 7 O -0.403 6.403 8 N -0.091 5.091 9 C -0.495 4.495 10 H 0.117 0.883 11 C -0.153 4.153 12 N -0.468 5.468 13 Si 0.738 3.262 14 H -0.197 1.197 15 H -0.206 1.206 16 H -0.188 1.188 17 C 0.165 3.835 18 C -0.189 4.189 19 C -0.099 4.099 20 C -0.262 4.262 21 C -0.046 4.046 22 N -0.210 5.210 23 C -0.119 4.119 24 H 0.141 0.859 25 C -0.037 4.037 26 C -0.130 4.130 27 C -0.142 4.142 28 C -0.149 4.149 29 C -0.137 4.137 30 C -0.128 4.128 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.150 0.850 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.156 0.844 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.718 0.977 7.262 9.295 hybrid contribution -0.504 -0.238 -1.916 1.995 sum -6.223 0.739 5.346 8.237 Atomic orbital electron populations 1.21390 0.92644 1.01958 1.01911 1.22329 0.95070 0.94125 1.02264 0.87738 1.22237 0.98274 1.03091 0.92203 0.85233 1.19927 0.88345 0.78330 0.82659 1.90647 1.36482 1.48017 1.65126 1.41067 1.07464 1.56594 1.03954 1.19327 0.88477 1.27152 1.14515 0.88336 1.25569 0.97146 0.93732 0.98813 1.69963 1.30261 1.14424 1.32144 0.86155 0.81110 0.78039 0.80908 1.19662 1.20580 1.18839 1.18741 0.86338 0.89668 0.88778 1.21444 0.98891 1.03655 0.94860 1.21154 0.92492 0.97291 0.98930 1.21646 0.98477 1.10160 0.95967 1.22315 0.94991 0.95198 0.92055 1.67587 0.97457 1.16822 1.39104 1.21184 1.00012 0.97861 0.92876 0.85882 1.19158 0.96203 0.93782 0.94551 1.20936 0.97360 0.99486 0.95216 1.21059 0.99451 0.93833 0.99905 1.21079 1.00551 0.96706 0.96574 1.21137 0.97501 0.99387 0.95719 1.21224 0.98267 0.92959 1.00313 0.92101 0.92503 0.91893 0.91394 0.85047 0.86538 0.86751 0.84382 0.86170 0.86447 0.86583 0.86262 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.68 9.84 37.16 0.37 -1.31 16 2 C -0.12 -1.96 6.11 -90.62 -0.55 -2.51 16 3 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 4 C -0.14 -2.71 4.09 -91.77 -0.37 -3.09 16 5 H 0.13 2.61 6.81 -51.93 -0.35 2.26 16 6 C 0.52 12.73 7.37 -10.99 -0.08 12.65 16 7 O -0.53 -14.10 14.60 5.56 0.08 -14.01 16 8 N -0.38 -9.71 2.68 -60.71 -0.16 -9.87 16 9 C -0.37 -8.92 7.26 -14.90 -0.11 -9.02 16 10 H 0.10 2.26 7.70 -52.48 -0.40 1.86 16 11 C 0.06 1.40 3.40 -17.49 -0.06 1.34 16 12 N -0.84 -21.69 12.14 55.49 0.67 -21.02 16 13 Si 0.91 18.27 29.56 -169.99 -5.02 13.24 16 14 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 15 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 16 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 17 C 0.40 10.19 6.46 -154.64 -1.00 9.19 16 18 C -0.16 -3.85 8.07 -39.22 -0.32 -4.17 16 19 C -0.07 -1.45 10.17 -39.31 -0.40 -1.85 16 20 C -0.24 -4.57 10.11 -39.40 -0.40 -4.97 16 21 C 0.11 2.42 11.18 -17.56 -0.20 2.22 16 22 N -0.49 -12.67 8.00 -12.34 -0.10 -12.77 16 23 C -0.10 -1.73 5.43 -91.77 -0.50 -2.23 16 24 H 0.12 2.27 7.67 -51.93 -0.40 1.87 16 25 C -0.04 -0.56 3.84 -104.63 -0.40 -0.96 16 26 C -0.11 -1.46 9.20 -39.58 -0.36 -1.82 16 27 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 28 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 29 C -0.12 -1.56 10.05 -39.59 -0.40 -1.95 16 30 C -0.11 -1.67 9.22 -39.58 -0.36 -2.04 16 31 H 0.06 0.84 6.17 -51.93 -0.32 0.52 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.28 6.76 8.32 -40.82 -0.34 6.42 16 35 H 0.13 3.09 6.02 -52.49 -0.32 2.77 16 36 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 38 H 0.14 2.48 8.06 -52.49 -0.42 2.06 16 39 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 41 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 43 H 0.13 2.08 7.32 -52.48 -0.38 1.70 16 LS Contribution 361.01 15.07 5.44 5.44 Total: -1.00 -30.18 361.01 -10.57 -40.76 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -5.54 Total: 12.53 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -5.94 Total: -14.29 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.41 Total: -43.66 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.08 Total: -14.01 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.02 Total: 13.24 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.18 -10.57 -40.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892471907.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.257 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds