Wall clock time and date at job start Tue Mar 31 2020 14:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35708 * 117.00134 * 2 1 4 4 C 1.39098 * 119.88987 * 180.02562 * 3 2 1 5 5 C 1.37610 * 120.16192 * 180.02562 * 4 3 2 6 6 C 1.39809 * 119.93150 * 0.02562 * 5 4 3 7 7 C 1.47451 * 120.10833 * 180.02562 * 6 5 4 8 8 O 1.21599 * 120.00345 * 215.86664 * 7 6 5 9 9 N 1.34781 * 119.99919 * 35.86416 * 7 6 5 10 10 C 1.47429 * 125.64713 * 355.96373 * 9 7 6 11 11 C 1.54909 * 104.83041 * 155.83484 * 10 9 7 12 12 C 1.55154 * 101.58218 * 37.00799 * 11 10 9 13 13 H 1.09009 * 110.71929 * 205.96040 * 12 11 10 14 14 N 1.46497 * 110.72008 * 82.86610 * 12 11 10 15 15 C 1.36937 * 120.00479 * 88.83822 * 14 12 11 16 16 H 1.08003 * 119.99699 * 0.02562 * 15 14 12 17 17 C 1.38811 * 120.00301 * 179.97438 * 15 14 12 18 18 N 1.31624 * 119.99905 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00110 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47386 * 270.00500 * 19 17 15 21 21 H 1.48508 * 109.47078 * 30.00370 * 19 17 15 22 22 H 1.48499 * 109.47388 * 149.99985 * 19 17 15 23 23 C 1.47484 * 125.59112 * 175.89809 * 9 7 6 24 24 H 1.08998 * 109.96532 * 300.40370 * 23 9 7 25 25 C 1.52998 * 110.03902 * 61.72422 * 23 9 7 26 26 C 1.39986 * 119.78474 * 0.27776 * 6 5 4 27 27 F 1.35095 * 120.08218 * 179.72666 * 26 6 5 28 28 C 1.38061 * 119.83091 * 359.44300 * 26 6 5 29 29 H 1.09004 * 109.46615 * 299.99394 * 1 2 3 30 30 H 1.08995 * 109.47151 * 59.99191 * 1 2 3 31 31 H 1.08992 * 109.47063 * 179.97438 * 1 2 3 32 32 H 1.08002 * 119.92010 * 0.04707 * 4 3 2 33 33 H 1.08001 * 120.02769 * 180.02562 * 5 4 3 34 34 H 1.08997 * 110.36288 * 36.99148 * 10 9 7 35 35 H 1.09007 * 110.36493 * 274.67173 * 10 9 7 36 36 H 1.09002 * 111.00253 * 278.93406 * 11 10 9 37 37 H 1.08994 * 111.00214 * 155.08679 * 11 10 9 38 38 H 0.97005 * 119.99616 * 268.83825 * 14 12 11 39 39 H 0.97001 * 119.99713 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.47732 * 177.61251 * 25 23 9 41 41 H 1.09004 * 109.46615 * 297.61284 * 25 23 9 42 42 H 1.08998 * 109.47275 * 57.60761 * 25 23 9 43 43 H 1.08006 * 119.96361 * 180.25557 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 3.4344 1.2792 -0.0005 5 6 4.0650 2.5024 0.0000 6 6 3.3077 3.6776 0.0016 7 6 3.9793 4.9903 0.0016 8 8 3.4973 5.9199 0.6197 9 7 5.1276 5.1598 -0.6835 10 6 5.8629 4.1035 -1.4027 11 6 6.6833 4.8551 -2.4805 12 6 7.0880 6.1456 -1.7202 13 1 7.2632 6.9651 -2.4174 14 7 8.2735 5.9094 -0.8926 15 6 9.5241 6.0919 -1.4197 16 1 9.6365 6.4105 -2.4455 17 6 10.6473 5.8686 -0.6352 18 7 10.5103 5.4809 0.6151 19 14 12.3533 6.1183 -1.3541 20 1 12.8273 4.8468 -1.9571 21 1 12.3007 7.1724 -2.3989 22 1 13.2879 6.5345 -0.2778 23 6 5.8548 6.4335 -0.8382 24 1 5.2154 7.1704 -1.3242 25 6 6.3031 6.9508 0.5301 26 6 1.9098 3.6041 0.0086 27 9 1.1722 4.7359 0.0158 28 6 1.2868 2.3721 0.0022 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0196 0.3715 -0.0017 33 1 5.1437 2.5543 -0.0008 34 1 5.1664 3.4088 -1.8720 35 1 6.5279 3.5730 -0.7212 36 1 6.0663 5.0899 -3.3479 37 1 7.5629 4.2815 -2.7725 38 1 8.1725 5.6236 0.0289 39 1 11.2953 5.3244 1.1631 40 1 6.8755 7.8694 0.4016 41 1 5.4273 7.1517 1.1472 42 1 6.9256 6.1997 1.0164 43 1 0.2084 2.3129 0.0034 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986499016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:27 Heat of formation + Delta-G solvation = -60.149849 kcal Electronic energy + Delta-G solvation = -27569.055796 eV Core-core repulsion = 23530.185515 eV Total energy + Delta-G solvation = -4038.870281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.03109 -40.63406 -39.83195 -37.75245 -36.95783 -34.02135 -31.99163 -31.06496 -30.86767 -30.38924 -28.70681 -27.75231 -25.32691 -24.02332 -23.57614 -22.84409 -22.02837 -20.09914 -18.91331 -18.61461 -17.58507 -17.28668 -16.93383 -16.39444 -16.16154 -16.05687 -15.50790 -15.15697 -14.87020 -14.62664 -14.31962 -13.91968 -13.81716 -13.58150 -13.24692 -12.95347 -12.85942 -12.66664 -12.48014 -12.29882 -12.00265 -11.77936 -11.56212 -11.34216 -11.22577 -10.98001 -10.92805 -10.76923 -10.61931 -10.23783 -10.05806 -9.65784 -9.55404 -9.25039 -8.96929 -8.60861 -8.29385 -7.04469 -5.83322 -3.12944 0.66384 0.87150 2.76592 2.79296 3.14592 3.39678 3.45661 3.47162 3.48286 3.92656 4.36348 4.50509 4.53461 4.55547 4.72016 4.72841 4.88181 5.02111 5.06524 5.16903 5.27938 5.43097 5.56782 5.58062 5.66315 5.71096 5.73350 5.80583 5.84032 5.93307 5.97441 6.10443 6.29659 6.33199 6.42272 6.51394 6.62504 6.72549 6.85569 6.89101 7.02954 7.65128 7.79409 8.34699 8.37311 9.46744 10.01731 10.36914 11.38850 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.003080 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.820799 B = 9087.694793 C = 9848.962794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.308 6.308 3 C 0.175 3.825 4 C -0.167 4.167 5 C -0.023 4.023 6 C -0.197 4.197 7 C 0.574 3.426 8 O -0.533 6.533 9 N -0.601 5.601 10 C 0.099 3.901 11 C -0.160 4.160 12 C 0.171 3.829 13 H 0.069 0.931 14 N -0.714 5.714 15 C -0.243 4.243 16 H 0.072 0.928 17 C -0.010 4.010 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.282 1.282 22 H -0.292 1.292 23 C 0.129 3.871 24 H 0.072 0.928 25 C -0.150 4.150 26 C 0.193 3.807 27 F -0.118 7.118 28 C -0.259 4.259 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.145 0.855 33 H 0.154 0.846 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.388 0.612 39 H 0.256 0.744 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.232 -10.586 -3.418 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.220 6.220 3 C 0.129 3.871 4 C -0.186 4.186 5 C -0.041 4.041 6 C -0.201 4.201 7 C 0.362 3.638 8 O -0.411 6.411 9 N -0.335 5.335 10 C -0.023 4.023 11 C -0.201 4.201 12 C 0.059 3.941 13 H 0.087 0.913 14 N -0.357 5.357 15 C -0.374 4.374 16 H 0.090 0.910 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.207 1.207 22 H -0.218 1.218 23 C 0.025 3.975 24 H 0.090 0.910 25 C -0.208 4.208 26 C 0.172 3.828 27 F -0.096 7.096 28 C -0.278 4.278 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.163 0.837 33 H 0.171 0.829 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.225 0.775 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -19.325 -10.183 -3.117 22.065 hybrid contribution 0.538 0.175 -0.060 0.569 sum -18.786 -10.008 -3.178 21.522 Atomic orbital electron populations 1.23171 0.77806 1.04417 1.01843 1.86081 1.21922 1.26281 1.87722 1.18922 0.92101 0.83645 0.92456 1.20448 0.91058 0.99044 1.08064 1.21406 1.01086 0.89708 0.91911 1.19950 0.92161 0.95246 1.12731 1.17482 0.79909 0.87098 0.79325 1.90797 1.65143 1.42309 1.42900 1.48626 1.22396 1.11614 1.50816 1.22550 0.94412 0.90702 0.94655 1.23530 0.99658 1.00433 0.96472 1.21205 0.86230 0.94874 0.91769 0.91280 1.42578 0.99917 1.80744 1.12424 1.19228 0.83239 1.38724 0.96254 0.91035 1.24744 0.97864 1.02083 0.95928 1.69661 1.28860 1.52552 1.06713 0.86196 0.84504 0.77704 0.77771 1.21735 1.20746 1.21821 1.22103 0.92994 0.84555 0.97799 0.90997 1.21927 1.00883 1.01998 0.95986 1.17257 0.87592 0.81921 0.96042 1.91575 1.76327 1.48987 1.92722 1.21051 1.01284 0.90786 1.14722 0.92195 0.92215 0.87789 0.83747 0.82853 0.91278 0.90719 0.91984 0.89251 0.77478 0.93412 0.91393 0.92512 0.91553 0.83718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.74 10.48 -18.83 -0.20 -2.94 16 3 C 0.18 1.78 6.69 -39.04 -0.26 1.52 16 4 C -0.17 -1.71 9.96 -39.49 -0.39 -2.10 16 5 C -0.02 -0.27 7.89 -39.22 -0.31 -0.58 16 6 C -0.20 -2.84 5.53 -104.90 -0.58 -3.42 16 7 C 0.57 10.03 7.25 -12.51 -0.09 9.94 16 8 O -0.53 -11.03 15.03 5.28 0.08 -10.95 16 9 N -0.60 -9.97 3.08 -163.91 -0.51 -10.48 16 10 C 0.10 1.45 5.10 -2.53 -0.01 1.43 16 11 C -0.16 -2.50 6.77 -24.58 -0.17 -2.67 16 12 C 0.17 3.18 3.46 -66.10 -0.23 2.95 16 13 H 0.07 1.28 8.11 -51.92 -0.42 0.86 16 14 N -0.71 -16.52 4.61 -51.65 -0.24 -16.76 16 15 C -0.24 -6.31 9.97 -15.06 -0.15 -6.46 16 16 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 18 N -0.93 -26.94 13.06 55.49 0.72 -26.22 16 19 Si 0.91 21.57 29.55 -169.99 -5.02 16.54 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 C 0.13 2.28 3.47 -66.70 -0.23 2.05 16 24 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 25 C -0.15 -2.88 8.47 37.16 0.31 -2.56 16 26 C 0.19 2.63 7.24 -38.99 -0.28 2.34 16 27 F -0.12 -1.82 16.12 2.25 0.04 -1.78 16 28 C -0.26 -2.74 8.99 -39.43 -0.35 -3.09 16 29 H 0.06 0.27 7.65 -51.93 -0.40 -0.12 16 30 H 0.06 0.26 7.65 -51.93 -0.40 -0.13 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.15 1.72 5.42 -52.49 -0.28 1.43 16 34 H 0.07 0.84 6.58 -51.93 -0.34 0.50 16 35 H 0.07 1.14 7.23 -51.92 -0.38 0.76 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.39 9.68 5.58 -40.82 -0.23 9.45 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.06 1.10 6.81 -51.93 -0.35 0.75 16 42 H 0.07 1.40 6.21 -51.93 -0.32 1.07 16 43 H 0.15 1.17 6.27 -52.48 -0.33 0.84 16 LS Contribution 351.76 15.07 5.30 5.30 Total: -1.00 -31.68 351.76 -7.21 -38.88 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.53 Total: 8.30 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.85 Total: 0.10 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.02 Total: -53.46 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.12 Total: -13.89 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.68 -7.21 -38.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986499016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.267 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds