Wall clock time and date at job start Tue Mar 31 2020 14:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35700 * 117.00042 * 2 1 4 4 C 1.38688 * 120.11915 * 359.73129 * 3 2 1 5 5 C 1.38059 * 120.10536 * 179.74056 * 4 3 2 6 6 C 1.38725 * 120.36829 * 0.51083 * 5 4 3 7 7 F 1.35100 * 119.87457 * 179.74984 * 6 5 4 8 8 C 1.37983 * 120.25063 * 359.76409 * 6 5 4 9 9 C 1.39727 * 119.87809 * 359.97438 * 8 6 5 10 10 C 1.47531 * 120.17522 * 179.97438 * 9 8 6 11 11 O 1.21597 * 120.00034 * 134.59872 * 10 9 8 12 12 N 1.34773 * 120.00504 * 314.59232 * 10 9 8 13 13 C 1.47425 * 125.65600 * 189.17613 * 12 10 9 14 14 C 1.54906 * 104.83575 * 204.09737 * 13 12 10 15 15 C 1.55160 * 101.57812 * 322.98913 * 14 13 12 16 16 H 1.09007 * 110.72104 * 277.13960 * 15 14 13 17 17 N 1.46498 * 110.71741 * 153.87113 * 15 14 13 18 18 C 1.36941 * 120.00420 * 86.45072 * 17 15 14 19 19 H 1.07995 * 119.99606 * 0.02562 * 18 17 15 20 20 C 1.38815 * 119.99975 * 180.02562 * 18 17 15 21 21 N 1.31621 * 119.99855 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99697 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47573 * 59.99417 * 22 20 18 24 24 H 1.48508 * 109.46942 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46752 * 299.99285 * 22 20 18 26 26 C 1.47028 * 125.64284 * 8.87259 * 12 10 9 27 27 H 1.09002 * 109.88564 * 59.55902 * 26 12 10 28 28 C 1.53003 * 109.88199 * 298.39094 * 26 12 10 29 29 H 1.09007 * 109.46990 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47583 * 59.99591 * 1 2 3 31 31 H 1.08999 * 109.46850 * 299.99022 * 1 2 3 32 32 H 1.07991 * 119.94966 * 359.97291 * 4 3 2 33 33 H 1.08002 * 119.81046 * 180.23622 * 5 4 3 34 34 H 1.08000 * 120.06076 * 179.97438 * 8 6 5 35 35 H 1.09002 * 110.36141 * 322.93316 * 13 12 10 36 36 H 1.09000 * 110.36354 * 85.25216 * 13 12 10 37 37 H 1.08995 * 111.00929 * 81.06545 * 14 13 12 38 38 H 1.08998 * 111.00328 * 204.87891 * 14 13 12 39 39 H 0.97003 * 119.99957 * 266.45394 * 17 15 14 40 40 H 0.97000 * 119.99537 * 180.02562 * 21 20 18 41 41 H 1.08992 * 109.46702 * 86.82061 * 28 26 12 42 42 H 1.08998 * 109.46853 * 206.82204 * 28 26 12 43 43 H 1.08998 * 109.46822 * 326.81763 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2921 2.3738 -0.0056 5 6 1.9192 3.6038 -0.0002 6 6 3.3041 3.6849 0.0002 7 9 3.9073 4.8938 0.0004 8 6 4.0678 2.5357 0.0001 9 6 3.4440 1.2854 0.0001 10 6 4.2541 0.0525 -0.0005 11 8 3.9705 -0.8618 0.7492 12 7 5.3086 -0.0606 -0.8322 13 6 6.0828 -1.2913 -1.0758 14 6 7.4696 -0.7984 -1.5591 15 6 7.0804 0.4361 -2.4147 16 1 6.7862 0.1319 -3.4193 17 7 8.1827 1.3998 -2.4654 18 6 9.1626 1.2701 -3.4131 19 1 9.1226 0.4576 -4.1234 20 6 10.2073 2.1830 -3.4608 21 7 10.2556 3.1735 -2.5953 22 14 11.5436 2.0064 -4.7540 23 1 10.9366 2.0847 -6.1070 24 1 12.5358 3.0995 -4.5929 25 1 12.2205 0.6948 -4.5903 26 6 5.8735 1.0216 -1.6516 27 1 6.2038 1.8386 -1.0101 28 6 4.8228 1.5264 -2.6428 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5137 0.8901 32 1 0.2137 2.3186 -0.0105 33 1 1.3282 4.5077 -0.0008 34 1 5.1457 2.6025 0.0000 35 1 6.1841 -1.8644 -0.1541 36 1 5.6042 -1.8940 -1.8477 37 1 8.0965 -0.5077 -0.7163 38 1 7.9633 -1.5561 -2.1675 39 1 8.2184 2.1298 -1.8276 40 1 10.9854 3.8116 -2.6289 41 1 4.2164 2.2975 -2.1679 42 1 5.3202 1.9433 -3.5185 43 1 4.1836 0.6980 -2.9480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986631678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:04 Heat of formation + Delta-G solvation = -60.538661 kcal Electronic energy + Delta-G solvation = -27968.501201 eV Core-core repulsion = 23929.614060 eV Total energy + Delta-G solvation = -4038.887141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.88637 -40.86730 -39.48891 -37.44998 -37.27193 -34.10902 -32.43054 -31.39613 -30.53151 -29.98058 -29.02888 -27.48460 -25.37089 -24.48707 -23.15021 -22.61047 -21.96676 -20.25227 -19.59146 -18.15003 -17.75231 -17.24018 -16.93490 -16.38125 -16.10796 -15.79689 -15.52268 -15.04149 -14.89135 -14.62942 -14.44470 -13.99752 -13.60142 -13.34799 -13.24428 -13.13739 -12.97063 -12.93075 -12.43221 -12.15536 -12.05405 -12.00499 -11.60529 -11.44668 -11.15938 -11.09501 -11.00442 -10.83450 -10.59913 -10.29380 -10.10529 -9.81539 -9.66870 -9.31390 -8.95932 -8.43681 -8.29107 -7.06219 -5.83906 -3.14470 0.63110 0.97202 2.72155 2.95210 3.06575 3.40632 3.43818 3.45918 3.46382 4.08207 4.29006 4.46298 4.53176 4.66851 4.75954 4.86255 4.93897 4.99345 5.13549 5.20159 5.25316 5.29367 5.47010 5.52855 5.57423 5.65384 5.70740 5.76968 5.82079 5.84760 5.91157 6.03718 6.16133 6.27850 6.30500 6.42465 6.49498 6.56893 6.63033 6.91846 7.04620 7.63519 7.72465 8.29872 8.33421 9.44989 9.98202 10.33012 11.38167 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016718 B = 0.003683 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.449600 B = 7600.001444 C = 8752.959016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.293 6.293 3 C 0.165 3.835 4 C -0.190 4.190 5 C -0.094 4.094 6 C 0.058 3.942 7 F -0.134 7.134 8 C -0.081 4.081 9 C -0.126 4.126 10 C 0.583 3.417 11 O -0.529 6.529 12 N -0.605 5.605 13 C 0.108 3.892 14 C -0.156 4.156 15 C 0.178 3.822 16 H 0.066 0.934 17 N -0.714 5.714 18 C -0.245 4.245 19 H 0.072 0.928 20 C -0.008 4.008 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.114 3.886 27 H 0.080 0.920 28 C -0.162 4.162 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.154 0.846 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.385 0.615 40 H 0.257 0.743 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.573 -2.348 4.329 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.205 6.205 3 C 0.117 3.883 4 C -0.209 4.209 5 C -0.113 4.113 6 C 0.038 3.962 7 F -0.113 7.113 8 C -0.100 4.100 9 C -0.130 4.130 10 C 0.371 3.629 11 O -0.406 6.406 12 N -0.338 5.338 13 C -0.015 4.015 14 C -0.197 4.197 15 C 0.066 3.934 16 H 0.084 0.916 17 N -0.355 5.355 18 C -0.376 4.376 19 H 0.090 0.910 20 C -0.205 4.205 21 N -0.577 5.577 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C 0.010 3.990 27 H 0.098 0.902 28 C -0.220 4.220 29 H 0.121 0.879 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.172 0.828 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.219 0.781 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.547 -3.009 4.628 21.275 hybrid contribution 0.673 0.669 -0.496 1.071 sum -19.874 -2.340 4.132 20.433 Atomic orbital electron populations 1.23157 0.78227 1.04429 1.01328 1.86238 1.21290 1.25634 1.87336 1.18881 0.90592 0.84954 0.93855 1.21008 1.00480 0.90945 1.08450 1.21054 0.92707 0.98767 0.98746 1.17346 0.90773 0.80637 1.07430 1.91541 1.83647 1.41833 1.94262 1.21386 1.01719 0.89730 0.97140 1.18977 0.90783 0.93726 1.09520 1.17411 0.79393 0.86325 0.79764 1.90786 1.69643 1.40893 1.39313 1.48457 1.30084 1.12756 1.42531 1.22282 0.91923 0.86634 1.00646 1.23580 0.94329 1.00425 1.01362 1.21224 0.86725 0.89473 0.95930 0.91598 1.42313 1.23974 1.30668 1.38553 1.19146 1.00811 1.09371 1.08238 0.91018 1.24752 0.99053 0.97552 0.99144 1.69647 1.33668 1.16588 1.37834 0.86260 0.81626 0.77031 0.81186 1.21190 1.21684 1.21189 1.22145 0.94697 0.89716 0.92429 0.90246 1.22334 0.98747 1.01081 0.99881 0.87916 0.92460 0.92389 0.83938 0.84063 0.82843 0.90846 0.91785 0.90603 0.90459 0.78050 0.93300 0.92571 0.90562 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.29 -3.73 9.43 -31.36 -0.30 -4.03 16 3 C 0.16 2.09 6.67 -38.72 -0.26 1.83 16 4 C -0.19 -1.81 9.03 -39.48 -0.36 -2.17 16 5 C -0.09 -0.92 10.01 -39.47 -0.39 -1.31 16 6 C 0.06 0.71 7.25 -39.49 -0.29 0.43 16 7 F -0.13 -1.81 17.26 2.25 0.04 -1.77 16 8 C -0.08 -1.10 6.41 -39.12 -0.25 -1.35 16 9 C -0.13 -1.83 4.55 -104.85 -0.48 -2.31 16 10 C 0.58 9.92 7.07 -12.47 -0.09 9.83 16 11 O -0.53 -10.46 16.60 -7.28 -0.12 -10.58 16 12 N -0.60 -9.80 3.02 -164.22 -0.50 -10.30 16 13 C 0.11 1.66 6.95 -2.53 -0.02 1.65 16 14 C -0.16 -2.64 6.77 -24.58 -0.17 -2.81 16 15 C 0.18 3.30 3.00 -66.09 -0.20 3.11 16 16 H 0.07 1.22 7.81 -51.93 -0.41 0.82 16 17 N -0.71 -16.71 5.25 -51.64 -0.27 -16.98 16 18 C -0.24 -6.42 9.98 -15.06 -0.15 -6.57 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.93 -27.06 13.06 55.49 0.72 -26.34 16 22 Si 0.91 21.66 29.55 -169.99 -5.02 16.63 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.11 1.85 2.53 -66.94 -0.17 1.68 16 27 H 0.08 1.34 5.40 -51.93 -0.28 1.06 16 28 C -0.16 -2.38 8.48 37.16 0.32 -2.06 16 29 H 0.10 0.60 8.14 -51.92 -0.42 0.17 16 30 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 31 H 0.06 0.33 7.67 -51.93 -0.40 -0.07 16 32 H 0.14 0.90 6.29 -52.49 -0.33 0.57 16 33 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.15 2.15 5.55 -52.49 -0.29 1.86 16 35 H 0.07 1.14 7.96 -51.93 -0.41 0.73 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.39 9.63 7.51 -40.82 -0.31 9.33 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.06 0.77 5.29 -51.93 -0.27 0.50 16 42 H 0.08 1.17 7.92 -51.93 -0.41 0.76 16 43 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 LS Contribution 353.43 15.07 5.33 5.33 Total: -1.00 -31.91 353.43 -7.31 -39.22 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.59 Total: 8.04 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -1.60 Total: 0.78 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.04 Total: -53.62 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.42 Total: -14.61 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.91 -7.31 -39.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986631678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.317 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds