Wall clock time and date at job start Tue Mar 31 2020 14:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35700 * 117.00042 * 2 1 4 4 C 1.38688 * 120.11915 * 359.73129 * 3 2 1 5 5 C 1.38059 * 120.10536 * 179.74056 * 4 3 2 6 6 C 1.38725 * 120.36829 * 0.51083 * 5 4 3 7 7 F 1.35100 * 119.87457 * 179.74984 * 6 5 4 8 8 C 1.37983 * 120.25063 * 359.76409 * 6 5 4 9 9 C 1.39727 * 119.87809 * 359.97438 * 8 6 5 10 10 C 1.47531 * 120.17522 * 179.97438 * 9 8 6 11 11 O 1.21597 * 120.00034 * 134.59872 * 10 9 8 12 12 N 1.34773 * 120.00504 * 314.59232 * 10 9 8 13 13 C 1.47425 * 125.65600 * 189.17613 * 12 10 9 14 14 C 1.54906 * 104.83575 * 204.09737 * 13 12 10 15 15 C 1.55160 * 101.57812 * 322.98913 * 14 13 12 16 16 H 1.09007 * 110.72104 * 277.13960 * 15 14 13 17 17 N 1.46498 * 110.71741 * 153.87113 * 15 14 13 18 18 C 1.36941 * 120.00420 * 86.45072 * 17 15 14 19 19 H 1.07995 * 119.99606 * 0.02562 * 18 17 15 20 20 C 1.38815 * 119.99975 * 180.02562 * 18 17 15 21 21 N 1.31621 * 119.99855 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99697 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47573 * 59.99417 * 22 20 18 24 24 H 1.48508 * 109.46942 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46752 * 299.99285 * 22 20 18 26 26 C 1.47028 * 125.64284 * 8.87259 * 12 10 9 27 27 H 1.09002 * 109.88564 * 59.55902 * 26 12 10 28 28 C 1.53003 * 109.88199 * 298.39094 * 26 12 10 29 29 H 1.09007 * 109.46990 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47583 * 59.99591 * 1 2 3 31 31 H 1.08999 * 109.46850 * 299.99022 * 1 2 3 32 32 H 1.07991 * 119.94966 * 359.97291 * 4 3 2 33 33 H 1.08002 * 119.81046 * 180.23622 * 5 4 3 34 34 H 1.08000 * 120.06076 * 179.97438 * 8 6 5 35 35 H 1.09002 * 110.36141 * 322.93316 * 13 12 10 36 36 H 1.09000 * 110.36354 * 85.25216 * 13 12 10 37 37 H 1.08995 * 111.00929 * 81.06545 * 14 13 12 38 38 H 1.08998 * 111.00328 * 204.87891 * 14 13 12 39 39 H 0.97003 * 119.99957 * 266.45394 * 17 15 14 40 40 H 0.97000 * 119.99537 * 180.02562 * 21 20 18 41 41 H 1.08992 * 109.46702 * 86.82061 * 28 26 12 42 42 H 1.08998 * 109.46853 * 206.82204 * 28 26 12 43 43 H 1.08998 * 109.46822 * 326.81763 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2921 2.3738 -0.0056 5 6 1.9192 3.6038 -0.0002 6 6 3.3041 3.6849 0.0002 7 9 3.9073 4.8938 0.0004 8 6 4.0678 2.5357 0.0001 9 6 3.4440 1.2854 0.0001 10 6 4.2541 0.0525 -0.0005 11 8 3.9705 -0.8618 0.7492 12 7 5.3086 -0.0606 -0.8322 13 6 6.0828 -1.2913 -1.0758 14 6 7.4696 -0.7984 -1.5591 15 6 7.0804 0.4361 -2.4147 16 1 6.7862 0.1319 -3.4193 17 7 8.1827 1.3998 -2.4654 18 6 9.1626 1.2701 -3.4131 19 1 9.1226 0.4576 -4.1234 20 6 10.2073 2.1830 -3.4608 21 7 10.2556 3.1735 -2.5953 22 14 11.5436 2.0064 -4.7540 23 1 10.9366 2.0847 -6.1070 24 1 12.5358 3.0995 -4.5929 25 1 12.2205 0.6948 -4.5903 26 6 5.8735 1.0216 -1.6516 27 1 6.2038 1.8386 -1.0101 28 6 4.8228 1.5264 -2.6428 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5137 0.8901 32 1 0.2137 2.3186 -0.0105 33 1 1.3282 4.5077 -0.0008 34 1 5.1457 2.6025 0.0000 35 1 6.1841 -1.8644 -0.1541 36 1 5.6042 -1.8940 -1.8477 37 1 8.0965 -0.5077 -0.7163 38 1 7.9633 -1.5561 -2.1675 39 1 8.2184 2.1298 -1.8276 40 1 10.9854 3.8116 -2.6289 41 1 4.2164 2.2975 -2.1679 42 1 5.3202 1.9433 -3.5185 43 1 4.1836 0.6980 -2.9480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986631678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:03 Heat of formation + Delta-G solvation = -80.232005 kcal Electronic energy + Delta-G solvation = -27969.355168 eV Core-core repulsion = 23929.614060 eV Total energy + Delta-G solvation = -4039.741108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.87395 -41.94875 -40.60113 -38.79836 -38.23830 -35.90300 -33.64058 -33.06011 -31.70247 -30.90396 -30.58857 -28.13493 -26.95368 -25.60562 -24.90515 -23.57492 -23.09089 -21.73662 -20.77988 -19.42182 -18.92225 -18.56375 -18.08807 -17.50011 -17.28213 -16.84464 -16.61815 -16.41673 -16.00274 -15.74597 -15.58900 -15.49999 -15.16461 -14.72260 -14.54000 -14.25947 -14.14429 -13.84675 -13.68388 -13.39322 -13.20180 -13.07464 -12.95435 -12.84579 -12.62696 -12.51979 -12.25174 -12.15168 -12.09138 -11.86900 -11.70684 -11.57671 -11.03221 -10.89596 -10.25524 -9.73889 -9.22484 -9.01895 -7.92348 -5.22010 -0.29942 0.06570 1.51182 1.52978 1.53393 1.59037 1.84626 2.20551 2.44211 2.58272 3.08638 3.33580 3.39558 3.54328 3.61721 3.76677 3.94096 3.95153 3.98554 4.17629 4.23895 4.29599 4.36769 4.39708 4.42894 4.49903 4.57798 4.68976 4.72023 4.75398 4.85961 4.90210 4.94836 4.98814 5.04194 5.16931 5.22613 5.26834 5.42778 5.54744 5.56372 6.25811 6.28006 6.42276 6.99768 7.35340 8.05929 8.30267 9.30589 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016718 B = 0.003683 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.449600 B = 7600.001444 C = 8752.959016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.324 6.324 3 C 0.162 3.838 4 C -0.173 4.173 5 C -0.075 4.075 6 C 0.042 3.958 7 F -0.145 7.145 8 C -0.090 4.090 9 C -0.154 4.154 10 C 0.582 3.418 11 O -0.564 6.564 12 N -0.605 5.605 13 C 0.111 3.889 14 C -0.146 4.146 15 C 0.173 3.827 16 H 0.072 0.928 17 N -0.725 5.725 18 C -0.239 4.239 19 H 0.081 0.919 20 C -0.071 4.071 21 N -0.968 5.968 22 Si 0.970 3.030 23 H -0.277 1.277 24 H -0.300 1.300 25 H -0.279 1.279 26 C 0.125 3.875 27 H 0.069 0.931 28 C -0.151 4.151 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.184 0.816 33 H 0.177 0.823 34 H 0.137 0.863 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.373 0.627 40 H 0.250 0.750 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.322 -2.518 3.507 23.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.236 6.236 3 C 0.114 3.886 4 C -0.192 4.192 5 C -0.093 4.093 6 C 0.022 3.978 7 F -0.124 7.124 8 C -0.109 4.109 9 C -0.158 4.158 10 C 0.372 3.628 11 O -0.444 6.444 12 N -0.338 5.338 13 C -0.011 4.011 14 C -0.187 4.187 15 C 0.063 3.937 16 H 0.090 0.910 17 N -0.365 5.365 18 C -0.370 4.370 19 H 0.099 0.901 20 C -0.263 4.263 21 N -0.618 5.618 22 Si 0.800 3.200 23 H -0.203 1.203 24 H -0.226 1.226 25 H -0.205 1.205 26 C 0.021 3.979 27 H 0.087 0.913 28 C -0.209 4.209 29 H 0.131 0.869 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.202 0.798 33 H 0.195 0.805 34 H 0.155 0.845 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.206 0.794 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.331 -3.221 3.785 23.854 hybrid contribution 1.378 0.655 -0.193 1.538 sum -21.953 -2.567 3.592 22.392 Atomic orbital electron populations 1.23523 0.75515 1.05923 1.03250 1.86205 1.24213 1.26039 1.87150 1.19079 0.90068 0.86158 0.93296 1.21412 1.02216 0.89383 1.06143 1.21450 0.91508 1.00347 0.96004 1.17544 0.91950 0.79752 1.08504 1.91515 1.84089 1.42271 1.94475 1.21205 1.01108 0.90279 0.98302 1.18831 0.91756 0.92554 1.12633 1.17843 0.79227 0.86870 0.78895 1.90749 1.70589 1.42472 1.40601 1.48502 1.30128 1.12783 1.42426 1.22288 0.90993 0.86646 1.01154 1.23401 0.95076 0.99812 1.00394 1.21398 0.86305 0.89192 0.96837 0.90986 1.42439 1.24884 1.31300 1.37839 1.19546 1.00800 1.08703 1.07979 0.90103 1.25511 1.01550 0.97853 1.01414 1.69807 1.34333 1.17733 1.39944 0.85261 0.78921 0.76673 0.79175 1.20272 1.22641 1.20499 1.21940 0.94327 0.89255 0.92372 0.91320 1.22219 0.98232 1.01536 0.98914 0.86929 0.90251 0.90553 0.79848 0.80516 0.84548 0.90975 0.89798 0.92590 0.89394 0.79416 0.94083 0.91625 0.91374 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.32 -7.64 9.43 -78.18 -0.74 -8.37 16 3 C 0.16 3.78 6.67 22.83 0.15 3.93 16 4 C -0.17 -2.63 9.03 22.33 0.20 -2.42 16 5 C -0.07 -1.20 10.01 22.34 0.22 -0.97 16 6 C 0.04 0.98 7.25 22.33 0.16 1.14 16 7 F -0.14 -3.82 17.26 44.97 0.78 -3.05 16 8 C -0.09 -2.45 6.41 22.57 0.14 -2.31 16 9 C -0.15 -4.42 4.55 -20.01 -0.09 -4.51 16 10 C 0.58 20.02 7.07 86.69 0.61 20.63 16 11 O -0.56 -22.66 16.60 7.99 0.13 -22.53 16 12 N -0.61 -19.77 3.02 -791.74 -2.40 -22.17 16 13 C 0.11 3.41 6.95 86.85 0.60 4.01 16 14 C -0.15 -4.95 6.77 31.99 0.22 -4.73 16 15 C 0.17 6.42 3.00 46.18 0.14 6.56 16 16 H 0.07 2.62 7.81 -2.38 -0.02 2.60 16 17 N -0.73 -34.54 5.25 -317.30 -1.67 -36.20 16 18 C -0.24 -12.54 9.98 84.03 0.84 -11.71 16 19 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 20 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 21 N -0.97 -57.76 13.06 21.65 0.28 -57.48 16 22 Si 0.97 44.82 29.55 68.60 2.03 46.85 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 24 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 C 0.13 4.12 2.53 45.34 0.11 4.23 16 27 H 0.07 2.44 5.40 -2.39 -0.01 2.43 16 28 C -0.15 -4.35 8.48 71.98 0.61 -3.74 16 29 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.08 0.54 7.65 -2.39 -0.02 0.52 16 31 H 0.08 0.57 7.67 -2.39 -0.02 0.55 16 32 H 0.18 1.24 6.29 -2.92 -0.02 1.23 16 33 H 0.18 1.61 8.06 -2.91 -0.02 1.58 16 34 H 0.14 4.08 5.55 -2.91 -0.02 4.06 16 35 H 0.07 2.25 7.96 -2.39 -0.02 2.23 16 36 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 39 H 0.37 19.39 7.51 -92.71 -0.70 18.69 16 40 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 41 H 0.06 1.78 5.29 -2.39 -0.01 1.76 16 42 H 0.07 2.07 7.92 -2.39 -0.02 2.05 16 43 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 Total: -1.00 -70.66 353.43 4.29 -66.37 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.36 Total: 28.69 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 5.51 Total: 7.90 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -3.78 Total: -115.85 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.60 Total: -30.90 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.78 Total: -3.05 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -70.66 4.29 -66.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986631678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.859 kcal (2) G-P(sol) polarization free energy of solvation -70.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds