Wall clock time and date at job start Tue Mar 31 2020 14:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35960 * 117.00092 * 2 1 4 4 C 1.38315 * 119.99148 * 359.97438 * 3 2 1 5 5 C 1.39614 * 119.81655 * 180.02562 * 4 3 2 6 6 C 1.47741 * 120.09416 * 179.97438 * 5 4 3 7 7 O 1.21568 * 119.99839 * 4.79387 * 6 5 4 8 8 N 1.34769 * 120.00014 * 184.79585 * 6 5 4 9 9 C 1.47424 * 125.64985 * 184.78347 * 8 6 5 10 10 C 1.54912 * 104.83162 * 155.91381 * 9 8 6 11 11 C 1.55158 * 101.58303 * 37.01204 * 10 9 8 12 12 H 1.08998 * 110.72077 * 205.95868 * 11 10 9 13 13 N 1.46502 * 110.72248 * 82.85802 * 11 10 9 14 14 C 1.36932 * 120.00166 * 150.01706 * 13 11 10 15 15 H 1.08005 * 119.99630 * 359.97438 * 14 13 11 16 16 C 1.38814 * 120.00185 * 180.02562 * 14 13 11 17 17 N 1.31618 * 119.99725 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00019 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47122 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46661 * 239.99530 * 18 16 14 21 21 H 1.48492 * 109.47343 * 119.99564 * 18 16 14 22 22 C 1.47026 * 125.64680 * 4.83172 * 8 6 5 23 23 H 1.09000 * 109.88730 * 300.43304 * 22 8 6 24 24 C 1.53002 * 109.88160 * 61.60319 * 22 8 6 25 25 C 1.39639 * 119.80878 * 0.25529 * 5 4 3 26 26 C 1.37890 * 119.97959 * 359.51497 * 25 5 4 27 27 C 1.38526 * 120.18049 * 0.48575 * 26 25 5 28 28 F 1.35107 * 119.90159 * 179.76954 * 27 26 25 29 29 H 1.08999 * 109.46753 * 60.00487 * 1 2 3 30 30 H 1.08999 * 109.47363 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47395 * 300.00498 * 1 2 3 32 32 H 1.07994 * 120.09446 * 0.03009 * 4 3 2 33 33 H 1.08997 * 110.36581 * 37.07913 * 9 8 6 34 34 H 1.09004 * 110.45766 * 274.80133 * 9 8 6 35 35 H 1.08993 * 111.00529 * 278.93744 * 10 9 8 36 36 H 1.08999 * 111.00112 * 155.08310 * 10 9 8 37 37 H 0.97000 * 119.99934 * 330.01079 * 13 11 10 38 38 H 0.96997 * 120.00323 * 0.02562 * 17 16 14 39 39 H 1.09002 * 109.47215 * 173.21239 * 24 22 8 40 40 H 1.09008 * 109.47056 * 293.20624 * 24 22 8 41 41 H 1.08995 * 109.47437 * 53.20700 * 24 22 8 42 42 H 1.07995 * 120.01174 * 179.72385 * 25 5 4 43 43 H 1.08004 * 119.90913 * 180.23072 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2928 2.3713 -0.0005 5 6 1.9305 3.6133 -0.0011 6 6 1.1317 4.8562 -0.0022 7 8 -0.0796 4.8003 0.0853 8 7 1.7458 6.0518 -0.1003 9 6 1.0849 7.3668 -0.0142 10 6 2.2011 8.3430 0.4340 11 6 3.4295 7.7845 -0.3319 12 1 4.3545 8.0365 0.1866 13 7 3.4550 8.2873 -1.7077 14 6 4.6511 8.4593 -2.3518 15 1 5.5757 8.2246 -1.8453 16 6 4.6753 8.9362 -3.6552 17 7 3.5485 9.2227 -4.2721 18 14 6.3071 9.1714 -4.5335 19 1 7.4174 8.7807 -3.6281 20 1 6.4610 10.5975 -4.9181 21 1 6.3400 8.3237 -5.7522 22 6 3.1856 6.2607 -0.3119 23 1 3.7499 5.8057 0.5021 24 6 3.6093 5.6485 -1.6486 25 6 3.3254 3.6775 -0.0065 26 6 4.0686 2.5160 -0.0011 27 6 3.4353 1.2840 -0.0006 28 9 4.1690 0.1495 0.0000 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2143 2.3164 -0.0005 33 1 0.2841 7.3412 0.7248 34 1 0.6925 7.6604 -0.9878 35 1 2.3560 8.2911 1.5116 36 1 1.9767 9.3629 0.1218 37 1 2.6246 8.4984 -2.1625 38 1 2.7012 9.1009 -3.8159 39 1 4.6470 5.9103 -1.8555 40 1 3.5113 4.5639 -1.5988 41 1 2.9716 6.0348 -2.4436 42 1 3.8220 4.6364 -0.0114 43 1 5.1474 2.5670 -0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987022133.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:11 Heat of formation + Delta-G solvation = -25.027884 kcal Electronic energy + Delta-G solvation = -28005.696750 eV Core-core repulsion = 23968.349472 eV Total energy + Delta-G solvation = -4037.347278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.96141 -40.96647 -39.68956 -37.80557 -37.32036 -34.36603 -32.49748 -31.48405 -30.95903 -29.69483 -28.70462 -27.51377 -25.55608 -24.00239 -23.44833 -22.70383 -22.04086 -20.29655 -19.67387 -18.22866 -17.82547 -17.51065 -17.00751 -16.36796 -16.04104 -15.85129 -15.43535 -15.24007 -14.95057 -14.69018 -14.43587 -14.32772 -13.83465 -13.67557 -13.24825 -13.08192 -13.05173 -12.72618 -12.49939 -12.30840 -11.92194 -11.68427 -11.46135 -11.31814 -11.17460 -10.93529 -10.73369 -10.66639 -10.46647 -10.33635 -10.12128 -9.89472 -9.31247 -9.14154 -9.04567 -8.46703 -8.26503 -7.20966 -6.22500 -3.25598 0.55261 1.06505 2.73711 2.87404 3.10006 3.44927 3.50377 3.59235 3.64256 3.99706 4.39799 4.51114 4.55077 4.75388 4.84732 4.93035 4.94898 4.99295 5.04162 5.18526 5.23640 5.31073 5.36206 5.50455 5.52196 5.60207 5.68141 5.72670 5.85494 5.89836 6.01265 6.05899 6.13873 6.18266 6.34758 6.37273 6.41522 6.51486 6.61493 7.01171 7.02726 7.66539 7.68879 8.23732 8.61746 9.04809 9.91702 10.05345 11.24722 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015072 B = 0.003737 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.322734 B = 7490.940908 C = 8580.163497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.076 3.924 4 C -0.122 4.122 5 C -0.106 4.106 6 C 0.573 3.427 7 O -0.550 6.550 8 N -0.596 5.596 9 C 0.112 3.888 10 C -0.148 4.148 11 C 0.179 3.821 12 H 0.080 0.920 13 N -0.719 5.719 14 C -0.337 4.337 15 H 0.068 0.932 16 C -0.038 4.038 17 N -0.939 5.939 18 Si 1.082 2.918 19 H -0.294 1.294 20 H -0.293 1.293 21 H -0.293 1.293 22 C 0.082 3.918 23 H 0.081 0.919 24 C -0.161 4.161 25 C -0.120 4.120 26 C -0.134 4.134 27 C 0.094 3.906 28 F -0.131 7.131 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.149 0.851 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.369 0.631 38 H 0.257 0.743 39 H 0.082 0.918 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.189 0.811 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.308 -12.762 11.532 17.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.030 3.970 4 C -0.142 4.142 5 C -0.109 4.109 6 C 0.362 3.638 7 O -0.430 6.430 8 N -0.328 5.328 9 C -0.010 4.010 10 C -0.187 4.187 11 C 0.066 3.934 12 H 0.098 0.902 13 N -0.360 5.360 14 C -0.467 4.467 15 H 0.086 0.914 16 C -0.237 4.237 17 N -0.583 5.583 18 Si 0.913 3.087 19 H -0.220 1.220 20 H -0.220 1.220 21 H -0.220 1.220 22 C -0.024 4.024 23 H 0.098 0.902 24 C -0.218 4.218 25 C -0.137 4.137 26 C -0.153 4.153 27 C 0.074 3.926 28 F -0.109 7.109 29 H 0.078 0.922 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.166 0.834 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.203 0.797 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.205 0.795 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.939 -12.609 10.217 16.345 hybrid contribution -1.107 -0.647 1.181 1.744 sum -3.046 -13.256 11.399 17.746 Atomic orbital electron populations 1.23142 0.77752 1.04208 1.01928 1.86120 1.21851 1.25357 1.89096 1.18768 0.90692 0.85571 1.01975 1.21190 1.01004 0.89977 1.02014 1.19703 0.93639 0.93028 1.04520 1.17739 0.86731 0.82440 0.76875 1.90738 1.13689 1.86882 1.51709 1.48432 1.09586 1.05062 1.69690 1.22184 0.95794 0.81676 1.01395 1.23211 0.96052 0.99314 1.00137 1.21155 0.96341 0.88332 0.87576 0.90226 1.42385 1.06280 1.77366 1.09931 1.20036 0.85623 1.42553 0.98521 0.91389 1.25733 1.04682 0.98977 0.94266 1.70827 0.97449 1.50644 1.39377 0.83194 0.73518 0.76517 0.75463 1.21995 1.22016 1.22007 1.23238 0.79873 1.01746 0.97542 0.90215 1.22534 1.04315 0.98412 0.96571 1.23082 0.93449 1.01640 0.95543 1.21038 1.01440 0.89718 1.03055 1.17278 0.85946 0.83020 1.06378 1.91505 1.76606 1.48911 1.93912 0.92213 0.87888 0.92270 0.83380 0.90970 0.91386 0.90764 0.89437 0.79724 0.93206 0.89952 0.92739 0.91064 0.79468 0.83325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.87 10.36 -19.61 -0.20 -4.07 16 3 C 0.08 1.01 6.69 -39.24 -0.26 0.75 16 4 C -0.12 -1.66 8.58 -39.04 -0.33 -2.00 16 5 C -0.11 -1.54 5.60 -104.98 -0.59 -2.13 16 6 C 0.57 9.60 7.62 -12.38 -0.09 9.51 16 7 O -0.55 -10.57 16.65 5.31 0.09 -10.48 16 8 N -0.60 -9.40 3.06 -166.93 -0.51 -9.91 16 9 C 0.11 1.70 6.82 -2.53 -0.02 1.68 16 10 C -0.15 -2.08 6.69 -24.58 -0.16 -2.25 16 11 C 0.18 2.97 3.52 -66.09 -0.23 2.74 16 12 H 0.08 1.29 8.06 -51.93 -0.42 0.88 16 13 N -0.72 -15.38 3.86 -51.65 -0.20 -15.58 16 14 C -0.34 -8.25 8.50 -15.06 -0.13 -8.37 16 15 H 0.07 1.63 7.83 -52.48 -0.41 1.22 16 16 C -0.04 -1.01 5.50 -17.43 -0.10 -1.11 16 17 N -0.94 -27.15 13.70 55.49 0.76 -26.39 16 18 Si 1.08 24.27 29.92 -169.99 -5.09 19.19 16 19 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.08 1.23 2.67 -66.95 -0.18 1.05 16 23 H 0.08 1.02 5.93 -51.93 -0.31 0.71 16 24 C -0.16 -2.71 7.17 37.16 0.27 -2.44 16 25 C -0.12 -1.54 6.18 -39.19 -0.24 -1.78 16 26 C -0.13 -1.58 10.00 -39.60 -0.40 -1.98 16 27 C 0.09 1.24 7.31 -39.16 -0.29 0.95 16 28 F -0.13 -1.78 17.10 2.25 0.04 -1.75 16 29 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 32 H 0.15 1.91 5.89 -52.49 -0.31 1.60 16 33 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.37 8.49 6.68 -40.82 -0.27 8.22 16 38 H 0.26 7.32 6.77 -40.82 -0.28 7.04 16 39 H 0.08 1.47 7.20 -51.93 -0.37 1.09 16 40 H 0.05 0.83 4.31 -51.92 -0.22 0.60 16 41 H 0.07 1.46 7.60 -51.93 -0.39 1.06 16 42 H 0.19 2.33 2.13 -56.24 -0.12 2.21 16 43 H 0.15 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 345.05 15.07 5.20 5.20 Total: -1.00 -30.66 345.05 -6.91 -37.57 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.23 Total: 10.40 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -1.76 Total: -4.18 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 0.05 Total: -51.88 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.11 Total: -14.55 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.09 Total: 19.19 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.66 -6.91 -37.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987022133.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.544 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds