Wall clock time and date at job start Tue Mar 31 2020 14:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35971 * 116.99393 * 2 1 4 4 C 1.38654 * 119.99637 * 0.02562 * 3 2 1 5 5 C 1.38375 * 120.28732 * 179.97438 * 4 3 2 6 6 C 1.37892 * 120.26408 * 0.04576 * 5 4 3 7 7 C 1.39671 * 119.98490 * 359.97438 * 6 5 4 8 8 C 1.47704 * 120.14408 * 180.02562 * 7 6 5 9 9 O 1.21568 * 120.00322 * 177.00304 * 8 7 6 10 10 N 1.34780 * 119.99962 * 356.99100 * 8 7 6 11 11 C 1.47416 * 125.64925 * 175.42134 * 10 8 7 12 12 C 1.54914 * 104.83336 * 204.16893 * 11 10 8 13 13 C 1.55156 * 101.58022 * 322.99171 * 12 11 10 14 14 H 1.09002 * 110.72150 * 276.96103 * 13 12 11 15 15 N 1.46502 * 110.71680 * 153.86260 * 13 12 11 16 16 C 1.36939 * 119.99845 * 86.45607 * 15 13 12 17 17 H 1.07998 * 119.99825 * 359.97438 * 16 15 13 18 18 C 1.38813 * 120.00046 * 179.97438 * 16 15 13 19 19 N 1.31613 * 119.99614 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99991 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47136 * 270.00339 * 20 18 16 22 22 H 1.48500 * 109.47109 * 150.00188 * 20 18 16 23 23 H 1.48500 * 109.46978 * 30.00252 * 20 18 16 24 24 C 1.47020 * 125.64540 * 355.47292 * 10 8 7 25 25 H 1.08996 * 109.88546 * 59.47886 * 24 10 8 26 26 C 1.52998 * 109.88319 * 298.31626 * 24 10 8 27 27 C 1.38780 * 119.98888 * 180.30206 * 3 2 1 28 28 F 1.35101 * 120.13185 * 0.02562 * 27 3 2 29 29 H 1.08997 * 109.46784 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46994 * 299.99745 * 1 2 3 31 31 H 1.08997 * 109.47459 * 59.99790 * 1 2 3 32 32 H 1.08000 * 119.85851 * 0.02562 * 4 3 2 33 33 H 1.07991 * 119.86741 * 180.02562 * 5 4 3 34 34 H 1.08001 * 120.00486 * 180.02562 * 6 5 4 35 35 H 1.09000 * 110.36698 * 85.33314 * 11 10 8 36 36 H 1.08997 * 110.46279 * 323.05945 * 11 10 8 37 37 H 1.08999 * 111.00479 * 204.92039 * 12 11 10 38 38 H 1.09001 * 111.00096 * 81.06620 * 12 11 10 39 39 H 0.96998 * 120.00052 * 266.45423 * 15 13 12 40 40 H 0.97002 * 120.00611 * 359.97438 * 19 18 16 41 41 H 1.09006 * 109.47017 * 282.72971 * 26 24 10 42 42 H 1.09004 * 109.47242 * 42.72925 * 26 24 10 43 43 H 1.09005 * 109.47459 * 162.73371 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2909 2.3743 0.0005 5 6 1.9127 3.6105 0.0011 6 6 3.2889 3.6961 0.0001 7 6 4.0608 2.5320 -0.0008 8 6 5.5352 2.6197 -0.0013 9 8 6.2044 1.6062 0.0529 10 7 6.1387 3.8233 -0.0620 11 6 7.5908 4.0617 0.0254 12 6 7.7236 5.5223 0.5241 13 6 6.5447 6.2113 -0.2125 14 1 6.8317 6.4856 -1.2277 15 7 6.0862 7.3879 0.5303 16 6 6.6902 8.6008 0.3323 17 1 7.5049 8.6899 -0.3710 18 6 6.2554 9.7158 1.0357 19 7 5.2629 9.6069 1.8933 20 14 7.0799 11.3701 0.7663 21 1 8.2112 11.5200 1.7164 22 1 6.0944 12.4573 0.9945 23 1 7.5894 11.4483 -0.6264 24 6 5.4577 5.1160 -0.2254 25 1 4.7615 5.2749 0.5980 26 6 4.7068 5.1437 -1.5581 27 6 3.4321 1.2841 -0.0063 28 9 4.1704 0.1527 -0.0130 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.2125 2.3149 0.0014 33 1 1.3178 4.5117 0.0019 34 1 3.7699 4.6631 0.0010 35 1 8.0530 3.9524 -0.9557 36 1 8.0476 3.3746 0.7377 37 1 8.6783 5.9530 0.2220 38 1 7.5957 5.5792 1.6051 39 1 5.3547 7.3077 1.1622 40 1 4.8350 8.7478 2.0335 41 1 5.4142 5.3121 -2.3703 42 1 4.1999 4.1907 -1.7095 43 1 3.9715 5.9483 -1.5443 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987242843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:48 Heat of formation + Delta-G solvation = -48.951851 kcal Electronic energy + Delta-G solvation = -27849.713991 eV Core-core repulsion = 23811.329292 eV Total energy + Delta-G solvation = -4038.384699 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.94723 -42.10454 -40.80129 -39.11541 -38.37273 -36.27798 -33.80267 -33.21271 -31.97311 -30.80751 -30.47860 -28.27411 -26.79142 -25.44611 -24.97606 -23.75194 -23.19842 -21.95091 -20.90455 -19.62632 -19.03724 -18.64454 -18.11041 -17.50606 -17.26847 -17.12963 -16.97366 -16.37767 -16.13828 -15.94372 -15.73662 -15.56344 -15.39174 -14.71921 -14.55043 -14.37936 -14.02035 -13.88525 -13.61057 -13.45902 -13.31388 -13.04627 -12.74550 -12.70933 -12.43796 -12.40471 -12.33096 -12.18621 -11.89252 -11.82889 -11.61194 -11.30767 -11.08763 -10.88626 -10.20892 -9.80621 -9.32970 -9.09727 -8.31741 -5.28420 -0.53206 0.06566 1.57502 1.58684 1.65384 1.73485 1.87409 2.15863 2.48967 2.74485 3.04250 3.12848 3.37427 3.47804 3.58926 3.72247 3.78567 3.83507 3.92481 4.07188 4.11041 4.22626 4.28415 4.34254 4.38453 4.38913 4.57969 4.67887 4.69946 4.73389 4.80171 4.81859 4.92455 5.00899 5.05628 5.14706 5.18455 5.20042 5.31666 5.43652 5.67740 6.18027 6.25145 6.57020 6.85503 7.11657 8.00843 8.11054 9.19958 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019721 B = 0.003288 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.456169 B = 8514.221262 C = 9606.221791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.334 6.334 3 C 0.078 3.922 4 C -0.138 4.138 5 C -0.090 4.090 6 C -0.130 4.130 7 C -0.153 4.153 8 C 0.568 3.432 9 O -0.572 6.572 10 N -0.598 5.598 11 C 0.111 3.889 12 C -0.146 4.146 13 C 0.179 3.821 14 H 0.073 0.927 15 N -0.735 5.735 16 C -0.325 4.325 17 H 0.070 0.930 18 C -0.097 4.097 19 N -0.975 5.975 20 Si 1.124 2.876 21 H -0.291 1.291 22 H -0.296 1.296 23 H -0.272 1.272 24 C 0.112 3.888 25 H 0.093 0.907 26 C -0.167 4.167 27 C 0.089 3.911 28 F -0.136 7.136 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.182 0.818 33 H 0.176 0.824 34 H 0.183 0.817 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.363 0.637 40 H 0.247 0.753 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.201 -13.703 -6.613 18.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.249 6.249 3 C 0.032 3.968 4 C -0.157 4.157 5 C -0.108 4.108 6 C -0.147 4.147 7 C -0.157 4.157 8 C 0.358 3.642 9 O -0.453 6.453 10 N -0.331 5.331 11 C -0.011 4.011 12 C -0.187 4.187 13 C 0.069 3.931 14 H 0.091 0.909 15 N -0.376 5.376 16 C -0.456 4.456 17 H 0.088 0.912 18 C -0.289 4.289 19 N -0.623 5.623 20 Si 0.950 3.050 21 H -0.218 1.218 22 H -0.223 1.223 23 H -0.198 1.198 24 C 0.009 3.991 25 H 0.111 0.889 26 C -0.224 4.224 27 C 0.068 3.932 28 F -0.114 7.114 29 H 0.137 0.863 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.199 0.801 33 H 0.193 0.807 34 H 0.199 0.801 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.196 0.804 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.581 -12.915 -6.321 17.853 hybrid contribution 0.108 -2.030 0.092 2.035 sum -10.473 -14.944 -6.229 19.283 Atomic orbital electron populations 1.23519 0.75120 1.06170 1.03175 1.86137 1.24563 1.25374 1.88800 1.18919 0.89466 0.87310 1.01144 1.21798 1.02234 0.90123 1.01538 1.21467 0.93508 0.98971 0.96845 1.23129 0.95609 0.99283 0.96709 1.19695 0.92803 0.93173 1.10023 1.17964 0.87588 0.82021 0.76583 1.90787 1.66826 1.35270 1.52376 1.48380 1.08839 1.05295 1.70548 1.22304 0.80084 0.96838 1.01918 1.23412 1.01458 0.93256 1.00561 1.21385 0.91172 0.85073 0.95478 0.90919 1.42425 1.41051 1.05047 1.49108 1.20305 1.14839 0.88216 1.22282 0.91223 1.26956 0.99578 1.05462 0.96944 1.70961 1.26180 1.26403 1.38746 0.82640 0.74281 0.71881 0.76155 1.21800 1.22293 1.19764 1.22328 0.95200 0.82322 0.99257 0.88950 1.22607 1.01160 1.03453 0.95200 1.17329 0.87181 0.81810 1.06900 1.91497 1.77146 1.49055 1.93715 0.86279 0.90704 0.90514 0.80109 0.80704 0.80059 0.89942 0.91047 0.89511 0.92390 0.80403 0.94195 0.91526 0.90769 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.25 16 2 O -0.33 -7.33 10.36 -93.22 -0.97 -8.29 16 3 C 0.08 1.84 6.69 22.50 0.15 1.99 16 4 C -0.14 -2.19 9.03 22.40 0.20 -1.99 16 5 C -0.09 -1.50 10.02 22.22 0.22 -1.28 16 6 C -0.13 -3.02 6.55 22.53 0.15 -2.87 16 7 C -0.15 -4.62 5.33 -20.07 -0.11 -4.73 16 8 C 0.57 20.09 7.54 86.74 0.65 20.74 16 9 O -0.57 -24.24 15.64 -3.93 -0.06 -24.30 16 10 N -0.60 -18.88 3.06 -804.05 -2.46 -21.34 16 11 C 0.11 3.34 6.89 86.86 0.60 3.94 16 12 C -0.15 -4.75 6.77 31.99 0.22 -4.53 16 13 C 0.18 6.17 3.11 46.18 0.14 6.31 16 14 H 0.07 2.51 7.55 -2.39 -0.02 2.49 16 15 N -0.73 -32.32 5.25 -317.32 -1.67 -33.98 16 16 C -0.33 -16.45 9.98 84.03 0.84 -15.61 16 17 H 0.07 3.44 7.83 -2.91 -0.02 3.42 16 18 C -0.10 -5.23 5.50 84.86 0.47 -4.76 16 19 N -0.98 -56.73 13.70 21.65 0.30 -56.43 16 20 Si 1.12 48.87 29.92 68.60 2.05 50.93 16 21 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 22 H -0.30 -13.21 7.11 99.48 0.71 -12.51 16 23 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 24 C 0.11 3.27 2.45 45.34 0.11 3.38 16 25 H 0.09 2.72 5.59 -2.39 -0.01 2.70 16 26 C -0.17 -4.05 7.81 71.98 0.56 -3.49 16 27 C 0.09 2.77 7.29 22.76 0.17 2.93 16 28 F -0.14 -5.08 15.40 44.97 0.69 -4.39 16 29 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.49 7.66 -2.39 -0.02 0.48 16 31 H 0.08 0.47 7.66 -2.39 -0.02 0.45 16 32 H 0.18 1.35 6.27 -2.91 -0.02 1.33 16 33 H 0.18 1.76 8.06 -2.92 -0.02 1.73 16 34 H 0.18 4.24 2.02 -7.89 -0.02 4.22 16 35 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.07 2.21 8.08 -2.39 -0.02 2.19 16 37 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.36 16.63 6.34 -92.71 -0.59 16.04 16 40 H 0.25 14.13 6.77 -92.71 -0.63 13.50 16 41 H 0.07 1.61 7.68 -2.38 -0.02 1.59 16 42 H 0.07 1.73 4.93 -2.38 -0.01 1.72 16 43 H 0.09 1.99 8.11 -2.38 -0.02 1.97 16 Total: -1.00 -73.11 346.53 3.98 -69.13 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 0.61 Total: 27.40 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 5.49 Total: 1.29 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -3.83 Total: -111.75 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -1.03 Total: -32.60 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.69 Total: -4.39 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 2.05 Total: 50.93 kcal Total: -73.11 3.98 -69.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987242843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.181 kcal (2) G-P(sol) polarization free energy of solvation -73.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds