Wall clock time and date at job start Tue Mar 31 2020 14:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.99694 * 2 1 4 4 C 1.54329 * 109.87866 * 238.91069 * 2 1 3 5 5 H 1.09000 * 110.71657 * 144.23522 * 4 2 1 6 6 N 1.46499 * 110.72260 * 21.13329 * 4 2 1 7 7 C 1.36933 * 119.99883 * 154.99694 * 6 4 2 8 8 H 1.08003 * 120.00020 * 0.02562 * 7 6 4 9 9 C 1.38812 * 119.99873 * 180.02562 * 7 6 4 10 10 N 1.31621 * 120.00209 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99846 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47539 * 60.00049 * 11 9 7 13 13 H 1.48504 * 109.46956 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.46900 * 299.99704 * 11 9 7 15 15 C 1.55161 * 102.94151 * 262.77415 * 4 2 1 16 16 C 1.55137 * 101.48526 * 324.33461 * 15 4 2 17 17 N 1.47019 * 109.88344 * 121.10434 * 2 1 3 18 18 C 1.34777 * 125.64379 * 300.43267 * 17 2 1 19 19 O 1.21283 * 120.00463 * 0.02562 * 18 17 2 20 20 C 1.50700 * 119.99675 * 179.72980 * 18 17 2 21 21 O 1.42899 * 109.47143 * 180.27800 * 20 18 17 22 22 C 1.35942 * 117.00266 * 179.97438 * 21 20 18 23 23 C 1.38711 * 120.03048 * 359.72890 * 22 21 20 24 24 C 1.38152 * 119.97094 * 179.73890 * 23 22 21 25 25 C 1.38452 * 120.02675 * 0.53025 * 24 23 22 26 26 F 1.35108 * 119.96457 * 179.74056 * 25 24 23 27 27 C 1.38452 * 120.06495 * 359.72690 * 25 24 23 28 28 C 1.38151 * 120.02862 * 0.02562 * 27 25 24 29 29 H 1.09003 * 109.46985 * 300.35096 * 1 2 3 30 30 H 1.08994 * 109.47312 * 60.35292 * 1 2 3 31 31 H 1.09003 * 109.46878 * 180.35310 * 1 2 3 32 32 H 0.97001 * 120.00068 * 335.00667 * 6 4 2 33 33 H 0.97001 * 119.99788 * 179.97438 * 10 9 7 34 34 H 1.08994 * 111.00643 * 82.57241 * 15 4 2 35 35 H 1.08997 * 111.00606 * 206.39144 * 15 4 2 36 36 H 1.09007 * 110.49426 * 278.45664 * 16 15 4 37 37 H 1.08993 * 110.34231 * 156.05913 * 16 15 4 38 38 H 1.09009 * 109.47352 * 300.27556 * 20 18 17 39 39 H 1.08998 * 109.47585 * 60.27844 * 20 18 17 40 40 H 1.08000 * 120.01535 * 359.97438 * 23 22 21 41 41 H 1.08000 * 119.98436 * 180.22803 * 24 23 22 42 42 H 1.07995 * 119.98337 * 180.02562 * 27 25 24 43 43 H 1.08000 * 120.01392 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7494 -1.2429 5 1 2.9639 -0.2811 -1.6202 6 7 1.0292 -0.8025 -2.2876 7 6 1.3952 -0.9385 -3.6001 8 1 2.4400 -1.0070 -3.8650 9 6 0.4234 -0.9882 -4.5900 10 7 -0.8498 -0.9042 -4.2672 11 14 0.9227 -1.1745 -6.3804 12 1 1.6774 -2.4414 -6.5547 13 1 -0.2929 -1.2005 -7.2331 14 1 1.7803 -0.0287 -6.7768 15 6 2.3518 -2.1695 -0.6927 16 6 2.8614 -1.8466 0.7366 17 7 2.0301 -0.7142 1.1838 18 6 1.7755 -0.3846 2.4656 19 8 1.0787 0.5754 2.7181 20 6 2.3512 -1.2131 3.5851 21 8 1.9369 -0.6708 4.8406 22 6 2.3724 -1.3056 5.9610 23 6 3.1770 -2.4303 5.8533 24 6 3.6234 -3.0714 6.9928 25 6 3.2589 -2.5980 8.2418 26 9 3.6919 -3.2290 9.3553 27 6 2.4515 -1.4786 8.3508 28 6 2.0079 -0.8327 7.2131 29 1 -0.3633 0.5193 0.8868 30 1 -0.3633 0.5083 -0.8931 31 1 -0.3633 -1.0277 0.0063 32 1 0.0908 -0.7412 -2.0496 33 1 -1.5289 -0.9386 -4.9591 34 1 1.4452 -2.7736 -0.6607 35 1 3.1265 -2.6620 -1.2803 36 1 3.9125 -1.5589 0.7112 37 1 2.7179 -2.7049 1.3929 38 1 1.9953 -2.2397 3.4976 39 1 3.4394 -1.1994 3.5248 40 1 3.4576 -2.8026 4.8790 41 1 4.2529 -3.9449 6.9092 42 1 2.1683 -1.1103 9.3257 43 1 1.3777 0.0402 7.2984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987505036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:26 Heat of formation + Delta-G solvation = -63.179120 kcal Electronic energy + Delta-G solvation = -26399.209728 eV Core-core repulsion = 22360.208088 eV Total energy + Delta-G solvation = -4039.001640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.14205 -40.72988 -39.84427 -37.91338 -37.02619 -34.29411 -32.00309 -31.64242 -30.81773 -30.24150 -29.27862 -27.71514 -25.29548 -23.83837 -23.38792 -22.80064 -22.32669 -19.92776 -18.93524 -18.63741 -17.70714 -17.65952 -17.12958 -16.72192 -16.47696 -15.86314 -15.52899 -15.35587 -15.06448 -14.59202 -14.33582 -14.06908 -13.87162 -13.74251 -13.39693 -13.33212 -13.07293 -12.68370 -12.54969 -12.50905 -12.11006 -11.89574 -11.65715 -11.32886 -11.28295 -11.23778 -11.01401 -10.86193 -10.53432 -10.29598 -10.08615 -9.80995 -9.60811 -9.60637 -9.00862 -8.55206 -8.48146 -7.09439 -5.86915 -3.17373 0.74074 0.82596 2.29779 2.56077 3.17262 3.36684 3.38056 3.43190 3.44005 3.93597 4.19392 4.34080 4.39391 4.50188 4.60238 4.72445 4.74560 4.90157 4.91623 5.11410 5.17100 5.26268 5.44701 5.46128 5.47432 5.56216 5.69967 5.72488 5.75741 5.81177 5.93819 6.02121 6.15189 6.21767 6.28278 6.46568 6.48634 6.61262 6.75321 6.90711 6.94538 7.57113 7.60300 8.15614 8.31247 9.42920 9.97025 10.31840 11.35225 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.036830 B = 0.002107 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.073741 B =13286.946773 C =13762.391592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 H 0.074 0.926 4 C 0.174 3.826 5 H 0.067 0.933 6 N -0.716 5.716 7 C -0.248 4.248 8 H 0.071 0.929 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.910 3.090 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.154 4.154 16 C 0.093 3.907 17 N -0.606 5.606 18 C 0.529 3.471 19 O -0.519 6.519 20 C 0.044 3.956 21 O -0.285 6.285 22 C 0.125 3.875 23 C -0.184 4.184 24 C -0.111 4.111 25 C 0.055 3.945 26 F -0.142 7.142 27 C -0.112 4.112 28 C -0.120 4.120 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.391 0.609 33 H 0.258 0.742 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.143 0.857 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.884 -4.460 21.944 24.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.026 3.974 3 H 0.092 0.908 4 C 0.062 3.938 5 H 0.085 0.915 6 N -0.359 5.359 7 C -0.379 4.379 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.195 4.195 16 C -0.031 4.031 17 N -0.342 5.342 18 C 0.315 3.685 19 O -0.394 6.394 20 C -0.034 4.034 21 O -0.197 6.197 22 C 0.079 3.921 23 C -0.203 4.203 24 C -0.130 4.130 25 C 0.036 3.964 26 F -0.121 7.121 27 C -0.130 4.130 28 C -0.139 4.139 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.229 0.771 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.160 0.840 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.410 -3.761 21.973 24.197 hybrid contribution 0.248 -0.618 -0.844 1.075 sum 9.658 -4.379 21.129 23.641 Atomic orbital electron populations 1.22014 0.94389 1.02460 1.02907 1.21945 0.95562 0.95852 0.84043 0.90843 1.21186 0.93353 0.91960 0.87332 0.91470 1.42650 1.04479 1.86976 1.01758 1.19194 0.92552 1.43071 0.83053 0.91062 1.24772 0.95237 1.02450 0.98159 1.69648 0.98908 1.56643 1.32554 0.86242 0.77060 0.77932 0.84746 1.21204 1.21670 1.21175 1.23612 1.01765 1.01475 0.92672 1.22518 0.94618 0.88208 0.97715 1.48495 1.50308 1.30959 1.04464 1.19453 0.81656 0.85288 0.82115 1.90742 1.37579 1.28212 1.82878 1.22537 1.00617 0.98063 0.82210 1.86190 1.69617 1.52233 1.11631 1.19105 0.94111 0.91802 0.87088 1.21163 1.02144 0.97269 0.99683 1.20939 1.00654 1.00839 0.90526 1.17590 1.01104 0.95085 0.82646 1.91495 1.88367 1.81420 1.50838 1.20973 0.97734 0.94693 0.99648 1.20328 1.02877 1.02129 0.88557 0.92107 0.89986 0.92531 0.77083 0.93255 0.90548 0.90405 0.91251 0.91412 0.88892 0.88942 0.84316 0.84356 0.83961 0.83810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 7.93 37.16 0.29 -2.62 16 2 C 0.13 2.18 3.48 -66.95 -0.23 1.94 16 3 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 4 C 0.17 3.13 3.48 -66.09 -0.23 2.90 16 5 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 6 N -0.72 -16.64 4.94 -51.65 -0.26 -16.89 16 7 C -0.25 -6.45 9.96 -15.06 -0.15 -6.60 16 8 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.00 13.06 55.49 0.72 -26.28 16 11 Si 0.91 21.48 29.55 -169.99 -5.02 16.45 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 15 C -0.15 -2.27 6.78 -24.46 -0.17 -2.44 16 16 C 0.09 1.03 6.71 -2.41 -0.02 1.02 16 17 N -0.61 -8.54 3.08 -162.87 -0.50 -9.04 16 18 C 0.53 7.70 7.71 -10.98 -0.08 7.62 16 19 O -0.52 -9.72 15.40 -14.36 -0.22 -9.95 16 20 C 0.04 0.46 4.22 36.01 0.15 0.61 16 21 O -0.28 -3.48 9.67 -39.47 -0.38 -3.86 16 22 C 0.13 1.25 6.69 -39.23 -0.26 0.99 16 23 C -0.18 -1.48 9.04 -39.44 -0.36 -1.83 16 24 C -0.11 -0.86 10.02 -39.53 -0.40 -1.26 16 25 C 0.06 0.48 7.30 -39.42 -0.29 0.19 16 26 F -0.14 -1.35 17.27 2.25 0.04 -1.32 16 27 C -0.11 -0.89 10.02 -39.53 -0.40 -1.29 16 28 C -0.12 -1.08 9.99 -39.44 -0.39 -1.47 16 29 H 0.06 1.12 6.74 -51.93 -0.35 0.77 16 30 H 0.08 1.64 6.82 -51.93 -0.35 1.29 16 31 H 0.06 1.05 8.01 -51.93 -0.42 0.63 16 32 H 0.39 9.69 5.06 -40.82 -0.21 9.48 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.07 0.58 7.47 -51.93 -0.39 0.19 16 38 H 0.09 0.75 7.35 -51.92 -0.38 0.36 16 39 H 0.09 0.70 7.67 -51.93 -0.40 0.30 16 40 H 0.14 0.81 6.30 -52.49 -0.33 0.48 16 41 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 42 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 359.48 15.07 5.42 5.42 Total: -1.00 -31.85 359.48 -8.57 -40.42 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.75 Total: 7.64 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -2.62 Total: -2.60 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.03 Total: -52.21 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.60 Total: -13.81 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.85 -8.57 -40.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987505036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.756 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds