Wall clock time and date at job start Tue Mar 31 2020 14:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.99925 * 2 1 4 4 C 1.54334 * 109.77855 * 121.16993 * 2 1 3 5 5 H 1.09001 * 110.66267 * 215.87568 * 4 2 1 6 6 N 1.46497 * 110.85020 * 339.02993 * 4 2 1 7 7 C 1.36940 * 119.99711 * 200.14796 * 6 4 2 8 8 H 1.07995 * 120.00096 * 359.97438 * 7 6 4 9 9 C 1.38815 * 119.99333 * 180.02562 * 7 6 4 10 10 N 1.31626 * 119.99327 * 179.97438 * 9 7 6 11 11 Si 1.86792 * 120.00502 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.47340 * 90.00284 * 11 9 7 13 13 H 1.48506 * 109.47240 * 210.00272 * 11 9 7 14 14 H 1.48504 * 109.47273 * 330.00181 * 11 9 7 15 15 C 1.55157 * 103.02010 * 97.49527 * 4 2 1 16 16 C 1.54917 * 101.58100 * 35.30661 * 15 4 2 17 17 N 1.47024 * 109.87933 * 238.91072 * 2 1 3 18 18 C 1.34771 * 125.65046 * 59.56109 * 17 2 1 19 19 O 1.21282 * 120.00369 * 359.71346 * 18 17 2 20 20 C 1.50707 * 120.00108 * 179.71425 * 18 17 2 21 21 O 1.42896 * 109.47416 * 180.02562 * 20 18 17 22 22 C 1.35940 * 117.00495 * 179.97438 * 21 20 18 23 23 C 1.38707 * 120.03483 * 180.02562 * 22 21 20 24 24 C 1.38155 * 119.96876 * 180.26024 * 23 22 21 25 25 C 1.38450 * 120.02707 * 359.43763 * 24 23 22 26 26 F 1.35109 * 119.96568 * 180.30428 * 25 24 23 27 27 C 1.38450 * 120.06538 * 0.55951 * 25 24 23 28 28 C 1.38155 * 120.02792 * 359.72347 * 27 25 24 29 29 H 1.09003 * 109.47303 * 179.63372 * 1 2 3 30 30 H 1.09003 * 109.47417 * 299.63968 * 1 2 3 31 31 H 1.09007 * 109.47257 * 59.63629 * 1 2 3 32 32 H 0.96998 * 120.00123 * 20.14109 * 6 4 2 33 33 H 0.97005 * 119.99546 * 179.97438 * 10 9 7 34 34 H 1.08995 * 111.01028 * 277.23415 * 15 4 2 35 35 H 1.08998 * 111.03690 * 153.39127 * 15 4 2 36 36 H 1.08999 * 110.36499 * 204.14749 * 16 15 4 37 37 H 1.08998 * 110.36565 * 81.82938 * 16 15 4 38 38 H 1.09000 * 109.46945 * 60.00061 * 20 18 17 39 39 H 1.09003 * 109.46955 * 300.00078 * 20 18 17 40 40 H 1.08002 * 120.01083 * 359.97438 * 23 22 21 41 41 H 1.07995 * 119.97841 * 179.72327 * 24 23 22 42 42 H 1.08004 * 119.98975 * 179.69689 * 27 25 24 43 43 H 1.08005 * 120.01262 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7517 1.2426 5 1 2.9600 -0.2829 1.6224 6 7 1.0257 -0.8103 2.2862 7 6 1.3838 -1.0490 3.5862 8 1 2.4229 -1.1945 3.8420 9 6 0.4110 -1.1051 4.5749 10 7 0.7552 -1.3350 5.8243 11 14 -1.3862 -0.8542 4.1322 12 1 -2.0018 -2.1642 3.8000 13 1 -2.1005 -0.2500 5.2855 14 1 -1.4855 0.0510 2.9592 15 6 2.3560 -2.1698 0.6913 16 6 2.8612 -1.8465 -0.7371 17 7 2.0299 -0.7140 -1.1840 18 6 1.7752 -0.3842 -2.4657 19 8 1.0745 0.5730 -2.7180 20 6 2.3612 -1.2050 -3.5857 21 8 1.9505 -0.6599 -4.8411 22 6 2.3961 -1.2872 -5.9618 23 6 2.0362 -0.8107 -7.2137 24 6 2.4854 -1.4524 -8.3517 25 6 3.3040 -2.5637 -8.2430 26 9 3.7476 -3.1867 -9.3568 27 6 3.6641 -3.0404 -6.9941 28 6 3.2116 -2.4041 -5.8543 29 1 -0.3634 -1.0277 -0.0066 30 1 -0.3634 0.5082 0.8932 31 1 -0.3634 0.5195 -0.8868 32 1 0.0924 -0.6799 2.0563 33 1 0.0755 -1.3739 6.5153 34 1 1.4521 -2.7779 0.6576 35 1 3.1325 -2.6599 1.2786 36 1 2.7177 -2.7047 -1.3935 37 1 3.9122 -1.5588 -0.7117 38 1 2.0107 -2.2339 -3.5038 39 1 3.4490 -1.1854 -3.5198 40 1 1.4013 0.0588 -7.2988 41 1 2.2016 -1.0842 -9.3265 42 1 4.2987 -3.9103 -6.9106 43 1 3.4923 -2.7764 -4.8801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987505037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:30 Heat of formation + Delta-G solvation = -58.373954 kcal Electronic energy + Delta-G solvation = -26493.066125 eV Core-core repulsion = 22454.272853 eV Total energy + Delta-G solvation = -4038.793272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.17394 -40.80267 -39.95450 -38.02139 -37.12006 -34.46101 -32.07899 -31.70147 -30.98593 -30.42076 -29.61196 -27.88076 -25.59315 -23.82996 -23.21254 -22.77971 -22.39100 -19.95458 -19.03750 -18.74351 -18.05678 -17.74706 -17.25298 -16.80338 -16.55344 -15.91641 -15.68297 -15.47280 -15.10718 -14.61227 -14.35356 -14.17375 -14.04040 -13.82333 -13.47139 -13.35433 -13.08126 -12.79544 -12.71166 -12.62148 -12.23460 -12.07491 -11.80010 -11.50723 -11.35738 -11.32575 -11.23518 -10.96322 -10.64962 -10.41762 -10.14751 -9.82502 -9.64565 -9.61241 -9.04955 -8.67124 -8.52538 -7.40675 -5.87576 -3.24967 0.70226 0.78671 2.21538 2.46129 3.13326 3.27823 3.30161 3.33175 3.39526 3.89945 4.13138 4.29388 4.33582 4.49451 4.54725 4.65643 4.70182 4.79297 4.86991 4.98350 5.06928 5.12424 5.28061 5.38432 5.42248 5.45996 5.54772 5.66323 5.71900 5.74053 5.76733 5.78941 5.92961 6.06173 6.23268 6.28059 6.40043 6.43223 6.49634 6.74008 6.88580 7.45037 7.86832 8.05067 8.31027 9.08040 9.80294 9.98527 11.30091 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032619 B = 0.002241 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.193032 B =12492.905067 C =12901.032447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.129 3.871 3 H 0.078 0.922 4 C 0.180 3.820 5 H 0.073 0.927 6 N -0.741 5.741 7 C -0.250 4.250 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.929 5.929 11 Si 0.879 3.121 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.275 1.275 15 C -0.152 4.152 16 C 0.092 3.908 17 N -0.607 5.607 18 C 0.530 3.470 19 O -0.519 6.519 20 C 0.044 3.956 21 O -0.285 6.285 22 C 0.124 3.876 23 C -0.120 4.120 24 C -0.112 4.112 25 C 0.056 3.944 26 F -0.142 7.142 27 C -0.111 4.111 28 C -0.184 4.184 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.368 0.632 33 H 0.261 0.739 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.615 -3.355 -25.806 26.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.026 3.974 3 H 0.096 0.904 4 C 0.068 3.932 5 H 0.091 0.909 6 N -0.386 5.386 7 C -0.379 4.379 8 H 0.110 0.890 9 C -0.187 4.187 10 N -0.576 5.576 11 Si 0.709 3.291 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.193 4.193 16 C -0.031 4.031 17 N -0.343 5.343 18 C 0.316 3.684 19 O -0.394 6.394 20 C -0.034 4.034 21 O -0.197 6.197 22 C 0.078 3.922 23 C -0.139 4.139 24 C -0.131 4.131 25 C 0.037 3.963 26 F -0.121 7.121 27 C -0.130 4.130 28 C -0.202 4.202 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.204 0.796 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.157 0.843 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.208 -2.688 -25.785 26.658 hybrid contribution -1.007 -0.357 -0.230 1.092 sum 5.202 -3.044 -26.015 26.704 Atomic orbital electron populations 1.22106 0.94989 1.02404 1.02908 1.21877 0.95122 0.96159 0.84226 0.90386 1.21144 0.93079 0.92284 0.86673 0.90879 1.42971 1.04203 1.86899 1.04488 1.19038 0.95321 1.41664 0.81925 0.89004 1.24663 0.97427 1.01465 0.95183 1.69695 1.32738 1.55475 0.99685 0.86660 0.86797 0.78111 0.77527 1.20950 1.21511 1.20157 1.23521 1.02073 1.00994 0.92739 1.22507 0.94780 0.88178 0.97631 1.48473 1.50408 1.31024 1.04387 1.19471 0.81649 0.85193 0.82085 1.90741 1.37510 1.28259 1.82892 1.22524 1.00681 0.98024 0.82185 1.86183 1.69320 1.52615 1.11605 1.19094 0.94098 0.91933 0.87038 1.20325 1.02934 1.02067 0.88553 1.20977 0.97615 0.94806 0.99656 1.17592 1.00838 0.95266 0.82651 1.91498 1.88018 1.81772 1.50796 1.20947 1.00689 1.00796 0.90519 1.21164 1.01955 0.97418 0.99695 0.92447 0.90689 0.91515 0.79554 0.92903 0.90598 0.89859 0.91205 0.91009 0.88852 0.88824 0.83825 0.83943 0.84316 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 7.93 37.16 0.29 -2.48 16 2 C 0.13 2.03 3.49 -66.95 -0.23 1.80 16 3 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 4 C 0.18 3.08 3.45 -66.09 -0.23 2.85 16 5 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 6 N -0.74 -16.17 4.82 -51.65 -0.25 -16.42 16 7 C -0.25 -6.59 10.46 -15.06 -0.16 -6.74 16 8 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 9 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 10 N -0.93 -28.07 13.97 55.49 0.78 -27.30 16 11 Si 0.88 21.30 27.73 -169.99 -4.71 16.59 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 14 H -0.28 -6.27 6.50 56.52 0.37 -5.90 16 15 C -0.15 -2.13 6.77 -24.58 -0.17 -2.30 16 16 C 0.09 0.95 6.69 -2.52 -0.02 0.94 16 17 N -0.61 -7.98 3.08 -163.01 -0.50 -8.48 16 18 C 0.53 7.25 7.71 -10.98 -0.08 7.17 16 19 O -0.52 -9.23 15.39 -14.35 -0.22 -9.45 16 20 C 0.04 0.43 4.23 36.01 0.15 0.58 16 21 O -0.29 -3.32 9.67 -39.46 -0.38 -3.70 16 22 C 0.12 1.19 6.69 -39.23 -0.26 0.92 16 23 C -0.12 -1.03 9.99 -39.44 -0.39 -1.42 16 24 C -0.11 -0.86 10.02 -39.53 -0.40 -1.25 16 25 C 0.06 0.47 7.30 -39.43 -0.29 0.18 16 26 F -0.14 -1.32 17.27 2.25 0.04 -1.28 16 27 C -0.11 -0.83 10.02 -39.53 -0.40 -1.22 16 28 C -0.18 -1.40 9.04 -39.44 -0.36 -1.75 16 29 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 30 H 0.07 1.34 6.72 -51.93 -0.35 0.99 16 31 H 0.07 1.14 6.74 -51.93 -0.35 0.79 16 32 H 0.37 8.01 2.80 -40.82 -0.11 7.90 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 0.54 7.48 -51.93 -0.39 0.15 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.68 7.37 -51.93 -0.38 0.30 16 39 H 0.09 0.65 7.66 -51.93 -0.40 0.25 16 40 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 43 H 0.14 0.75 6.30 -52.48 -0.33 0.42 16 LS Contribution 356.26 15.07 5.37 5.37 Total: -1.00 -32.74 356.26 -8.22 -40.96 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.70 Total: 6.30 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -2.63 Total: -2.59 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.02 Total: -52.19 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.60 Total: -13.15 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.71 Total: 16.59 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.74 -8.22 -40.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987505037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.417 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds