Wall clock time and date at job start Tue Mar 31 2020 14:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.00192 * 2 1 4 4 C 1.54335 * 109.77872 * 121.16755 * 2 1 3 5 5 H 1.09001 * 110.66774 * 215.87896 * 4 2 1 6 6 N 1.46499 * 110.84985 * 339.02192 * 4 2 1 7 7 C 1.36934 * 120.00119 * 200.14550 * 6 4 2 8 8 H 1.08000 * 120.00287 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99936 * 180.02562 * 7 6 4 10 10 N 1.31619 * 119.99877 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99790 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47155 * 60.00504 * 11 9 7 13 13 H 1.48507 * 109.46810 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46923 * 300.00023 * 11 9 7 15 15 C 1.55147 * 103.02283 * 97.49478 * 4 2 1 16 16 C 1.54915 * 101.58465 * 35.30515 * 15 4 2 17 17 N 1.47029 * 109.88079 * 238.90461 * 2 1 3 18 18 C 1.34779 * 125.64710 * 59.56060 * 17 2 1 19 19 O 1.21273 * 120.00054 * 359.71514 * 18 17 2 20 20 C 1.50692 * 119.99611 * 179.71553 * 18 17 2 21 21 O 1.42898 * 109.47221 * 179.97438 * 20 18 17 22 22 C 1.35959 * 117.00520 * 179.97438 * 21 20 18 23 23 C 1.38659 * 120.05742 * 0.26036 * 22 21 20 24 24 C 1.38183 * 119.96624 * 180.25493 * 23 22 21 25 25 C 1.38271 * 120.09338 * 359.48558 * 24 23 22 26 26 C 1.38250 * 120.12488 * 0.25977 * 25 24 23 27 27 C 1.38333 * 120.03275 * 359.97438 * 26 25 24 28 28 F 1.35100 * 120.05128 * 179.97438 * 27 26 25 29 29 H 1.08999 * 109.47474 * 179.64467 * 1 2 3 30 30 H 1.09003 * 109.47174 * 299.64418 * 1 2 3 31 31 H 1.09007 * 109.47136 * 59.63917 * 1 2 3 32 32 H 0.97005 * 119.99729 * 20.15753 * 6 4 2 33 33 H 0.96999 * 119.99922 * 179.97438 * 10 9 7 34 34 H 1.08996 * 111.00612 * 277.23527 * 15 4 2 35 35 H 1.09001 * 111.03884 * 153.39152 * 15 4 2 36 36 H 1.08998 * 110.36796 * 204.14957 * 16 15 4 37 37 H 1.09002 * 110.36213 * 81.82841 * 16 15 4 38 38 H 1.09005 * 109.47300 * 60.00415 * 20 18 17 39 39 H 1.09001 * 109.47490 * 300.00150 * 20 18 17 40 40 H 1.07995 * 120.02218 * 0.02562 * 23 22 21 41 41 H 1.08002 * 119.95612 * 179.77125 * 24 23 22 42 42 H 1.08004 * 119.93378 * 180.23499 * 25 24 23 43 43 H 1.08002 * 119.98207 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0522 -0.7516 1.2427 5 1 2.9600 -0.2828 1.6225 6 7 1.0258 -0.8100 2.2863 7 6 1.3838 -1.0487 3.5863 8 1 2.4230 -1.1935 3.8423 9 6 0.4111 -1.1046 4.5751 10 7 -0.8554 -0.9287 4.2630 11 14 0.8997 -1.4295 6.3485 12 1 1.8211 -0.3611 6.8118 13 1 -0.3152 -1.4407 7.2025 14 1 1.5814 -2.7456 6.4410 15 6 2.3560 -2.1697 0.6915 16 6 2.8612 -1.8466 -0.7369 17 7 2.0300 -0.7141 -1.1840 18 6 1.7753 -0.3844 -2.4658 19 8 1.0746 0.5727 -2.7180 20 6 2.3612 -1.2053 -3.5855 21 8 1.9495 -0.6610 -4.8410 22 6 2.3951 -1.2886 -5.9618 23 6 3.2067 -2.4078 -5.8549 24 6 3.6627 -3.0410 -6.9953 25 6 3.3022 -2.5666 -8.2431 26 6 2.4889 -1.4542 -8.3540 27 6 2.0333 -0.8133 -7.2158 28 9 1.2389 0.2741 -7.3238 29 1 -0.3634 -1.0276 -0.0064 30 1 -0.3634 0.5083 0.8932 31 1 -0.3634 0.5195 -0.8868 32 1 0.0924 -0.6798 2.0564 33 1 -1.5351 -0.9681 4.9538 34 1 1.4521 -2.7778 0.6578 35 1 3.1325 -2.6598 1.2789 36 1 2.7177 -2.7049 -1.3933 37 1 3.9123 -1.5589 -0.7115 38 1 2.0107 -2.2342 -3.5036 39 1 3.4490 -1.1857 -3.5197 40 1 3.4853 -2.7822 -4.8811 41 1 4.2979 -3.9105 -6.9120 42 1 3.6571 -3.0658 -9.1326 43 1 2.2091 -1.0853 -9.3297 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987512213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:55 Heat of formation + Delta-G solvation = -60.691524 kcal Electronic energy + Delta-G solvation = -26708.140902 eV Core-core repulsion = 22669.247132 eV Total energy + Delta-G solvation = -4038.893770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.96788 -40.65694 -39.79578 -38.01156 -37.12269 -34.27737 -31.95087 -31.09139 -30.84924 -30.57826 -29.37298 -27.76642 -25.28872 -23.77991 -23.20597 -22.81795 -22.41664 -19.88140 -19.00018 -18.63843 -17.60847 -17.36858 -17.08287 -16.81465 -16.49766 -15.79293 -15.56166 -15.23241 -15.16556 -14.72789 -14.54853 -14.18171 -13.72656 -13.71201 -13.28907 -13.11417 -12.90575 -12.58655 -12.55117 -12.17720 -12.02048 -11.88913 -11.61439 -11.54642 -11.48229 -11.26827 -11.01208 -10.85437 -10.52228 -10.28854 -10.05857 -9.78882 -9.58537 -9.34811 -8.99351 -8.56955 -8.52880 -7.07590 -5.85397 -3.15804 0.72937 0.86748 2.26476 2.58163 3.18806 3.33130 3.38810 3.43781 3.44860 3.91414 4.21698 4.37494 4.49698 4.51569 4.60855 4.73214 4.81910 4.83479 4.92393 5.06862 5.15959 5.27123 5.45718 5.48302 5.55811 5.57530 5.64889 5.73474 5.77452 5.94816 5.97141 6.04141 6.16368 6.21085 6.25607 6.48193 6.50446 6.62854 6.76390 6.91399 6.93305 7.58398 7.61694 8.17885 8.32891 9.44458 9.98886 10.33713 11.36864 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033143 B = 0.002300 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.613420 B =12170.980846 C =12751.622605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.074 0.926 4 C 0.174 3.826 5 H 0.064 0.936 6 N -0.717 5.717 7 C -0.247 4.247 8 H 0.071 0.929 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.286 1.286 15 C -0.153 4.153 16 C 0.093 3.907 17 N -0.606 5.606 18 C 0.529 3.471 19 O -0.516 6.516 20 C 0.045 3.955 21 O -0.281 6.281 22 C 0.100 3.900 23 C -0.185 4.185 24 C -0.089 4.089 25 C -0.132 4.132 26 C -0.117 4.117 27 C 0.072 3.928 28 F -0.129 7.129 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.391 0.609 33 H 0.258 0.742 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.139 0.861 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.328 -6.115 -23.089 26.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.028 3.972 3 H 0.092 0.908 4 C 0.062 3.938 5 H 0.082 0.918 6 N -0.361 5.361 7 C -0.378 4.378 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.194 4.194 16 C -0.030 4.030 17 N -0.343 5.343 18 C 0.315 3.685 19 O -0.391 6.391 20 C -0.033 4.033 21 O -0.193 6.193 22 C 0.053 3.947 23 C -0.204 4.204 24 C -0.107 4.107 25 C -0.150 4.150 26 C -0.136 4.136 27 C 0.052 3.948 28 F -0.108 7.108 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.230 0.770 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.157 0.843 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 10.797 -5.356 -23.084 26.041 hybrid contribution 0.003 -0.334 1.026 1.079 sum 10.800 -5.689 -22.057 25.210 Atomic orbital electron populations 1.22021 0.94384 1.02558 1.02872 1.21881 0.95565 0.95779 0.83955 0.90791 1.21172 0.93298 0.91980 0.87347 0.91810 1.42669 1.05118 1.85278 1.02989 1.19179 0.92970 1.41621 0.83997 0.91088 1.24770 0.95295 1.02372 0.98193 1.69647 0.99286 1.56050 1.32798 0.86244 0.77042 0.78056 0.84650 1.21180 1.21673 1.21219 1.23561 1.01796 1.01455 0.92637 1.22477 0.94613 0.88211 0.97740 1.48491 1.50372 1.30983 1.04411 1.19427 0.81765 0.85251 0.82093 1.90752 1.37346 1.28200 1.82837 1.22551 1.00621 0.98114 0.82058 1.86235 1.69172 1.52398 1.11490 1.19119 0.96089 0.93388 0.86120 1.21223 1.01708 0.96726 1.00739 1.21038 0.98625 0.99392 0.91652 1.20948 0.99247 0.96683 0.98121 1.21053 0.98766 0.96551 0.97186 1.17031 0.97870 0.88561 0.91363 1.91538 1.71248 1.51302 1.96672 0.92424 0.90046 0.92044 0.77049 0.93263 0.90532 0.90399 0.91409 0.91293 0.88835 0.88861 0.84347 0.84900 0.84797 0.83991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 7.93 37.16 0.29 -2.71 16 2 C 0.13 2.26 3.49 -66.94 -0.23 2.03 16 3 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 4 C 0.17 3.20 3.45 -66.10 -0.23 2.97 16 5 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 6 N -0.72 -16.89 5.02 -51.65 -0.26 -17.15 16 7 C -0.25 -6.48 9.98 -15.06 -0.15 -6.63 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.23 13.06 55.49 0.72 -26.51 16 11 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 15 C -0.15 -2.31 6.77 -24.58 -0.17 -2.48 16 16 C 0.09 1.07 6.69 -2.53 -0.02 1.05 16 17 N -0.61 -8.86 3.08 -163.01 -0.50 -9.36 16 18 C 0.53 8.14 7.71 -10.99 -0.08 8.06 16 19 O -0.52 -10.23 15.39 -14.35 -0.22 -10.45 16 20 C 0.05 0.50 4.23 36.00 0.15 0.65 16 21 O -0.28 -3.93 9.53 -39.52 -0.38 -4.31 16 22 C 0.10 1.14 6.69 -39.18 -0.26 0.88 16 23 C -0.19 -1.50 9.04 -39.45 -0.36 -1.86 16 24 C -0.09 -0.57 10.04 -39.59 -0.40 -0.97 16 25 C -0.13 -0.84 10.04 -39.57 -0.40 -1.23 16 26 C -0.12 -0.95 10.02 -39.54 -0.40 -1.34 16 27 C 0.07 0.82 7.31 -39.30 -0.29 0.53 16 28 F -0.13 -1.78 17.11 2.25 0.04 -1.74 16 29 H 0.06 1.09 8.05 -51.93 -0.42 0.68 16 30 H 0.08 1.65 6.74 -51.93 -0.35 1.30 16 31 H 0.06 1.17 6.74 -51.92 -0.35 0.82 16 32 H 0.39 9.82 4.94 -40.82 -0.20 9.62 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 0.60 7.48 -51.93 -0.39 0.21 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.81 7.36 -51.93 -0.38 0.43 16 39 H 0.09 0.76 7.67 -51.93 -0.40 0.36 16 40 H 0.14 0.82 6.30 -52.49 -0.33 0.48 16 41 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 42 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 43 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -33.25 359.23 -8.58 -41.83 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.75 Total: 7.10 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -2.63 Total: -1.40 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.04 Total: -53.02 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.60 Total: -14.76 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.25 -8.58 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987512213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.859 kcal (2) G-P(sol) polarization free energy of solvation -33.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds