Wall clock time and date at job start Tue Mar 31 2020 14:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.00192 * 2 1 4 4 C 1.54335 * 109.77872 * 121.16755 * 2 1 3 5 5 H 1.09001 * 110.66774 * 215.87896 * 4 2 1 6 6 N 1.46499 * 110.84985 * 339.02192 * 4 2 1 7 7 C 1.36934 * 120.00119 * 200.14550 * 6 4 2 8 8 H 1.08000 * 120.00287 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99936 * 180.02562 * 7 6 4 10 10 N 1.31619 * 119.99877 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99790 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47155 * 60.00504 * 11 9 7 13 13 H 1.48507 * 109.46810 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46923 * 300.00023 * 11 9 7 15 15 C 1.55147 * 103.02283 * 97.49478 * 4 2 1 16 16 C 1.54915 * 101.58465 * 35.30515 * 15 4 2 17 17 N 1.47029 * 109.88079 * 238.90461 * 2 1 3 18 18 C 1.34779 * 125.64710 * 59.56060 * 17 2 1 19 19 O 1.21273 * 120.00054 * 359.71514 * 18 17 2 20 20 C 1.50692 * 119.99611 * 179.71553 * 18 17 2 21 21 O 1.42898 * 109.47221 * 179.97438 * 20 18 17 22 22 C 1.35959 * 117.00520 * 179.97438 * 21 20 18 23 23 C 1.38659 * 120.05742 * 0.26036 * 22 21 20 24 24 C 1.38183 * 119.96624 * 180.25493 * 23 22 21 25 25 C 1.38271 * 120.09338 * 359.48558 * 24 23 22 26 26 C 1.38250 * 120.12488 * 0.25977 * 25 24 23 27 27 C 1.38333 * 120.03275 * 359.97438 * 26 25 24 28 28 F 1.35100 * 120.05128 * 179.97438 * 27 26 25 29 29 H 1.08999 * 109.47474 * 179.64467 * 1 2 3 30 30 H 1.09003 * 109.47174 * 299.64418 * 1 2 3 31 31 H 1.09007 * 109.47136 * 59.63917 * 1 2 3 32 32 H 0.97005 * 119.99729 * 20.15753 * 6 4 2 33 33 H 0.96999 * 119.99922 * 179.97438 * 10 9 7 34 34 H 1.08996 * 111.00612 * 277.23527 * 15 4 2 35 35 H 1.09001 * 111.03884 * 153.39152 * 15 4 2 36 36 H 1.08998 * 110.36796 * 204.14957 * 16 15 4 37 37 H 1.09002 * 110.36213 * 81.82841 * 16 15 4 38 38 H 1.09005 * 109.47300 * 60.00415 * 20 18 17 39 39 H 1.09001 * 109.47490 * 300.00150 * 20 18 17 40 40 H 1.07995 * 120.02218 * 0.02562 * 23 22 21 41 41 H 1.08002 * 119.95612 * 179.77125 * 24 23 22 42 42 H 1.08004 * 119.93378 * 180.23499 * 25 24 23 43 43 H 1.08002 * 119.98207 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0522 -0.7516 1.2427 5 1 2.9600 -0.2828 1.6225 6 7 1.0258 -0.8100 2.2863 7 6 1.3838 -1.0487 3.5863 8 1 2.4230 -1.1935 3.8423 9 6 0.4111 -1.1046 4.5751 10 7 -0.8554 -0.9287 4.2630 11 14 0.8997 -1.4295 6.3485 12 1 1.8211 -0.3611 6.8118 13 1 -0.3152 -1.4407 7.2025 14 1 1.5814 -2.7456 6.4410 15 6 2.3560 -2.1697 0.6915 16 6 2.8612 -1.8466 -0.7369 17 7 2.0300 -0.7141 -1.1840 18 6 1.7753 -0.3844 -2.4658 19 8 1.0746 0.5727 -2.7180 20 6 2.3612 -1.2053 -3.5855 21 8 1.9495 -0.6610 -4.8410 22 6 2.3951 -1.2886 -5.9618 23 6 3.2067 -2.4078 -5.8549 24 6 3.6627 -3.0410 -6.9953 25 6 3.3022 -2.5666 -8.2431 26 6 2.4889 -1.4542 -8.3540 27 6 2.0333 -0.8133 -7.2158 28 9 1.2389 0.2741 -7.3238 29 1 -0.3634 -1.0276 -0.0064 30 1 -0.3634 0.5083 0.8932 31 1 -0.3634 0.5195 -0.8868 32 1 0.0924 -0.6798 2.0564 33 1 -1.5351 -0.9681 4.9538 34 1 1.4521 -2.7778 0.6578 35 1 3.1325 -2.6598 1.2789 36 1 2.7177 -2.7049 -1.3933 37 1 3.9123 -1.5589 -0.7115 38 1 2.0107 -2.2342 -3.5036 39 1 3.4490 -1.1857 -3.5197 40 1 3.4853 -2.7822 -4.8811 41 1 4.2979 -3.9105 -6.9120 42 1 3.6571 -3.0658 -9.1326 43 1 2.2091 -1.0853 -9.3297 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987512213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:54 Heat of formation + Delta-G solvation = -81.483240 kcal Electronic energy + Delta-G solvation = -26709.042498 eV Core-core repulsion = 22669.247132 eV Total energy + Delta-G solvation = -4039.795366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.84150 -41.64638 -40.78060 -39.05103 -38.14009 -35.96216 -33.61121 -32.19090 -31.69674 -31.49489 -30.69388 -28.81831 -26.80779 -25.41154 -24.26483 -23.55187 -23.31428 -21.15913 -20.08980 -19.60736 -19.42749 -18.15153 -18.11504 -17.70192 -17.45422 -16.93680 -16.62792 -16.53507 -16.05677 -15.82810 -15.72097 -15.35866 -15.23045 -14.86477 -14.54981 -14.20986 -13.91273 -13.76476 -13.52135 -13.37971 -13.20628 -13.04441 -12.92012 -12.84092 -12.65462 -12.55657 -12.19716 -12.13938 -12.11547 -12.03465 -11.60541 -11.53295 -10.92020 -10.88661 -9.93315 -9.76152 -9.25444 -9.00911 -7.92825 -5.22085 0.14113 0.26336 1.31665 1.43805 1.50324 1.52759 1.58675 2.38293 2.58921 2.62240 3.23570 3.29090 3.41174 3.71824 3.78153 3.81104 3.89205 3.90591 4.01982 4.05099 4.17987 4.29710 4.35276 4.35542 4.41790 4.50717 4.54628 4.62898 4.76721 4.85285 4.99230 5.03301 5.10705 5.19376 5.24632 5.27803 5.28225 5.44558 5.49798 5.56271 5.68420 6.20156 6.28460 6.45164 7.01321 7.35732 8.09663 8.32531 9.30704 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033143 B = 0.002300 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.613420 B =12170.980846 C =12751.622605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.136 3.864 3 H 0.065 0.935 4 C 0.165 3.835 5 H 0.070 0.930 6 N -0.734 5.734 7 C -0.237 4.237 8 H 0.084 0.916 9 C -0.078 4.078 10 N -0.972 5.972 11 Si 0.974 3.026 12 H -0.279 1.279 13 H -0.302 1.302 14 H -0.274 1.274 15 C -0.145 4.145 16 C 0.098 3.902 17 N -0.603 5.603 18 C 0.521 3.479 19 O -0.574 6.574 20 C 0.052 3.948 21 O -0.323 6.323 22 C 0.072 3.928 23 C -0.182 4.182 24 C -0.081 4.081 25 C -0.124 4.124 26 C -0.118 4.118 27 C 0.026 3.974 28 F -0.157 7.157 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.379 0.621 33 H 0.250 0.750 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.166 0.834 41 H 0.170 0.830 42 H 0.168 0.832 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.069 -9.179 -24.563 30.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.032 3.968 3 H 0.083 0.917 4 C 0.056 3.944 5 H 0.088 0.912 6 N -0.377 5.377 7 C -0.369 4.369 8 H 0.101 0.899 9 C -0.270 4.270 10 N -0.623 5.623 11 Si 0.803 3.197 12 H -0.205 1.205 13 H -0.229 1.229 14 H -0.200 1.200 15 C -0.185 4.185 16 C -0.023 4.023 17 N -0.338 5.338 18 C 0.310 3.690 19 O -0.453 6.453 20 C -0.026 4.026 21 O -0.236 6.236 22 C 0.027 3.973 23 C -0.200 4.200 24 C -0.099 4.099 25 C -0.142 4.142 26 C -0.137 4.137 27 C 0.007 3.993 28 F -0.136 7.136 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.215 0.785 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.143 0.857 39 H 0.150 0.850 40 H 0.184 0.816 41 H 0.187 0.813 42 H 0.185 0.815 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 14.627 -8.463 -24.592 29.838 hybrid contribution -1.076 0.594 1.349 1.825 sum 13.551 -7.868 -23.243 28.032 Atomic orbital electron populations 1.21828 0.95995 1.01468 1.01112 1.21601 0.94158 0.95829 0.85251 0.91703 1.21400 0.92035 0.94517 0.86496 0.91248 1.42865 1.05718 1.85564 1.03529 1.19619 0.93317 1.38888 0.85062 0.89856 1.25578 0.95381 1.03840 1.02170 1.69822 1.00298 1.58718 1.33442 0.85207 0.76214 0.78345 0.79936 1.20500 1.22872 1.20019 1.23362 1.01619 0.98342 0.95217 1.22723 0.95420 0.88393 0.95741 1.48491 1.50354 1.31406 1.03572 1.20323 0.80818 0.84901 0.82949 1.90728 1.39968 1.30921 1.83701 1.22648 1.02336 0.97939 0.79630 1.86162 1.70539 1.54093 1.12822 1.19415 0.97866 0.94973 0.85095 1.21578 1.00403 0.95269 1.02797 1.21541 0.97731 0.99699 0.90891 1.21421 0.97597 0.95458 0.99732 1.21345 0.98653 0.96892 0.96792 1.17661 0.99508 0.89116 0.93049 1.91452 1.72374 1.52905 1.96882 0.93108 0.92420 0.92996 0.78457 0.94165 0.92513 0.88881 0.87261 0.87893 0.85675 0.85047 0.81639 0.81262 0.81484 0.82582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.76 7.93 71.98 0.57 -5.19 16 2 C 0.14 4.72 3.49 45.34 0.16 4.88 16 3 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.17 5.94 3.45 46.18 0.16 6.10 16 5 H 0.07 2.42 8.12 -2.39 -0.02 2.40 16 6 N -0.73 -35.08 5.02 -317.32 -1.59 -36.67 16 7 C -0.24 -12.43 9.98 84.04 0.84 -11.59 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16 10 N -0.97 -58.78 13.06 21.65 0.28 -58.50 16 11 Si 0.97 44.79 29.55 68.60 2.03 46.82 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 15 C -0.14 -3.98 6.77 31.98 0.22 -3.77 16 16 C 0.10 1.82 6.69 86.86 0.58 2.41 16 17 N -0.60 -16.53 3.08 -788.03 -2.43 -18.96 16 18 C 0.52 15.55 7.71 87.65 0.68 16.22 16 19 O -0.57 -23.58 15.39 16.03 0.25 -23.33 16 20 C 0.05 1.01 4.23 71.23 0.30 1.31 16 21 O -0.32 -8.91 9.53 -74.06 -0.71 -9.61 16 22 C 0.07 1.57 6.69 22.53 0.15 1.72 16 23 C -0.18 -2.25 9.04 22.36 0.20 -2.04 16 24 C -0.08 -0.64 10.04 22.26 0.22 -0.42 16 25 C -0.12 -1.09 10.04 22.28 0.22 -0.87 16 26 C -0.12 -1.74 10.02 22.30 0.22 -1.52 16 27 C 0.03 0.61 7.31 22.45 0.16 0.77 16 28 F -0.16 -4.69 17.11 44.97 0.77 -3.93 16 29 H 0.05 2.02 8.05 -2.39 -0.02 2.00 16 30 H 0.06 2.52 6.74 -2.39 -0.02 2.50 16 31 H 0.05 2.12 6.74 -2.38 -0.02 2.10 16 32 H 0.38 19.83 4.94 -92.70 -0.46 19.37 16 33 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.11 1.23 7.48 -2.39 -0.02 1.22 16 37 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.13 1.60 7.36 -2.38 -0.02 1.58 16 39 H 0.13 1.51 7.67 -2.39 -0.02 1.49 16 40 H 0.17 1.00 6.30 -2.91 -0.02 0.98 16 41 H 0.17 0.16 8.06 -2.91 -0.02 0.13 16 42 H 0.17 0.35 8.06 -2.91 -0.02 0.33 16 43 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -79.33 359.23 4.34 -74.99 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.58 Total: 25.04 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 5.16 Total: 4.15 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -3.74 Total: -114.12 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.46 Total: -32.95 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.77 Total: -3.93 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -79.33 4.34 -74.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987512213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.493 kcal (2) G-P(sol) polarization free energy of solvation -79.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds