Wall clock time and date at job start Tue Mar 31 2020 14:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35766 * 117.00203 * 2 1 4 4 C 1.38934 * 119.91234 * 359.97438 * 3 2 1 5 5 C 1.37738 * 120.11100 * 180.02562 * 4 3 2 6 6 C 1.39715 * 119.95481 * 359.97438 * 5 4 3 7 7 C 1.47603 * 120.08284 * 180.02562 * 6 5 4 8 8 O 1.21581 * 120.00153 * 152.59994 * 7 6 5 9 9 N 1.34774 * 119.99807 * 332.59877 * 7 6 5 10 10 C 1.47429 * 125.64728 * 3.67166 * 9 7 6 11 11 C 1.54915 * 104.82912 * 204.08941 * 10 9 7 12 12 H 1.08997 * 111.00228 * 204.88135 * 11 10 9 13 13 N 1.46497 * 111.00560 * 81.05882 * 11 10 9 14 14 C 1.36940 * 119.99749 * 86.45716 * 13 11 10 15 15 H 1.07999 * 120.00026 * 359.97438 * 14 13 11 16 16 C 1.38809 * 119.99975 * 180.02562 * 14 13 11 17 17 N 1.31616 * 120.00079 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99986 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47289 * 59.99679 * 18 16 14 20 20 H 1.48497 * 109.47257 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47147 * 299.99633 * 18 16 14 22 22 C 1.55163 * 101.58026 * 322.98559 * 11 10 9 23 23 C 1.47024 * 125.64985 * 183.35638 * 9 7 6 24 24 H 1.08997 * 109.87969 * 59.55524 * 23 9 7 25 25 C 1.53006 * 109.87771 * 298.39940 * 23 9 7 26 26 C 1.39745 * 119.83785 * 0.02562 * 6 5 4 27 27 C 1.37897 * 119.88214 * 0.25499 * 26 6 5 28 28 F 1.35099 * 119.97415 * 179.72412 * 27 26 6 29 29 H 1.08993 * 109.47307 * 300.00135 * 1 2 3 30 30 H 1.09000 * 109.46465 * 60.00401 * 1 2 3 31 31 H 1.09005 * 109.46578 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.94680 * 0.02748 * 4 3 2 33 33 H 1.08001 * 120.01990 * 180.02562 * 5 4 3 34 34 H 1.08999 * 110.36552 * 322.91806 * 10 9 7 35 35 H 1.08994 * 110.37031 * 85.24960 * 10 9 7 36 36 H 0.96997 * 120.00506 * 266.45016 * 13 11 10 37 37 H 0.97005 * 120.00426 * 180.02562 * 17 16 14 38 38 H 1.09004 * 110.72091 * 153.86515 * 22 11 10 39 39 H 1.08997 * 110.72210 * 276.96682 * 22 11 10 40 40 H 1.08997 * 109.47047 * 61.45381 * 25 23 9 41 41 H 1.09002 * 109.46693 * 181.45145 * 25 23 9 42 42 H 1.09000 * 109.47182 * 301.44479 * 25 23 9 43 43 H 1.07999 * 120.05550 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2870 2.3737 -0.0005 5 6 1.9081 3.6031 -0.0011 6 6 3.3031 3.6799 -0.0005 7 6 3.9717 4.9959 -0.0005 8 8 5.0802 5.1146 0.4844 9 7 3.3532 6.0659 -0.5382 10 6 1.9854 6.0812 -1.0881 11 6 1.9749 7.2611 -2.0918 12 1 0.9651 7.6475 -2.2299 13 7 2.5626 6.8652 -3.3740 14 6 1.7818 6.2756 -4.3321 15 1 0.7329 6.1022 -4.1424 16 6 2.3388 5.9000 -5.5468 17 7 3.6172 6.1109 -5.7779 18 14 1.2735 5.0963 -6.8540 19 1 0.1744 6.0200 -7.2337 20 1 2.1010 4.7930 -8.0492 21 1 0.6984 3.8364 -6.3182 22 6 2.8728 8.2967 -1.3646 23 6 3.9284 7.4127 -0.6674 24 1 4.8340 7.3725 -1.2727 25 6 4.2499 7.9763 0.7183 26 6 4.0640 2.5078 0.0000 27 6 3.4352 1.2805 -0.0053 28 9 4.1690 0.1462 -0.0104 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 0.2086 2.3146 -0.0005 33 1 1.3171 4.5071 -0.0011 34 1 1.7729 5.1439 -1.6024 35 1 1.2590 6.2523 -0.2938 36 1 3.5047 7.0207 -3.5444 37 1 4.0064 5.8487 -6.6269 38 1 3.3430 8.9702 -2.0812 39 1 2.2961 8.8589 -0.6302 40 1 4.9868 7.3393 1.2075 41 1 4.6518 8.9844 0.6162 42 1 3.3403 8.0068 1.3181 43 1 5.1426 2.5631 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988978536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:38 Heat of formation + Delta-G solvation = -62.216459 kcal Electronic energy + Delta-G solvation = -27813.736008 eV Core-core repulsion = 23774.776113 eV Total energy + Delta-G solvation = -4038.959896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.77563 -40.54655 -39.66714 -37.74815 -36.84416 -34.03250 -32.16509 -31.37193 -30.83805 -29.94569 -28.49678 -27.59815 -25.74462 -24.07734 -23.55654 -22.80222 -21.63001 -20.19045 -19.23696 -18.26050 -17.61662 -17.21231 -16.99934 -16.34725 -16.15072 -15.49305 -15.13921 -15.02575 -14.86352 -14.60210 -14.36750 -13.97688 -13.80624 -13.45534 -13.38872 -13.00264 -12.75418 -12.51977 -12.35414 -12.23326 -12.03637 -11.92997 -11.70021 -11.34328 -11.27292 -11.19152 -10.93751 -10.73515 -10.59212 -10.38201 -10.07151 -9.77051 -9.63753 -9.09707 -9.02410 -8.37489 -8.22012 -7.08234 -5.86358 -3.17185 0.81830 1.06403 2.88152 2.90982 3.20957 3.36906 3.41367 3.43705 3.73556 4.13092 4.48886 4.53629 4.58870 4.78910 4.91249 4.93717 5.05961 5.07408 5.11947 5.23601 5.28252 5.40191 5.44201 5.54446 5.63238 5.70399 5.73829 5.82375 5.86836 5.91620 5.98793 6.12511 6.15312 6.19478 6.36334 6.40139 6.44156 6.53948 6.64611 6.76888 7.06387 7.58602 7.85461 8.30713 8.43855 9.42561 9.97413 10.31637 11.35458 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008797 B = 0.005143 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3181.965913 B = 5443.484965 C = 7416.160135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.115 3.885 4 C -0.190 4.190 5 C -0.061 4.061 6 C -0.129 4.129 7 C 0.578 3.422 8 O -0.547 6.547 9 N -0.589 5.589 10 C 0.058 3.942 11 C 0.168 3.832 12 H 0.072 0.928 13 N -0.711 5.711 14 C -0.250 4.250 15 H 0.072 0.928 16 C -0.006 4.006 17 N -0.927 5.927 18 Si 0.906 3.094 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.137 4.137 23 C 0.139 3.861 24 H 0.076 0.924 25 C -0.160 4.160 26 C -0.059 4.059 27 C 0.060 3.940 28 F -0.131 7.131 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.143 0.857 33 H 0.152 0.848 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.386 0.614 37 H 0.258 0.742 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.116 -4.125 14.413 16.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.221 6.221 3 C 0.068 3.932 4 C -0.209 4.209 5 C -0.080 4.080 6 C -0.132 4.132 7 C 0.367 3.633 8 O -0.427 6.427 9 N -0.321 5.321 10 C -0.068 4.068 11 C 0.056 3.944 12 H 0.089 0.911 13 N -0.351 5.351 14 C -0.381 4.381 15 H 0.089 0.911 16 C -0.203 4.203 17 N -0.574 5.574 18 Si 0.737 3.263 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.212 1.212 22 C -0.176 4.176 23 C 0.036 3.964 24 H 0.094 0.906 25 C -0.218 4.218 26 C -0.079 4.079 27 C 0.040 3.960 28 F -0.110 7.110 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.161 0.839 33 H 0.169 0.831 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.220 0.780 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.499 -4.420 14.536 16.525 hybrid contribution -0.415 -0.648 -0.951 1.223 sum -6.914 -5.069 13.585 16.064 Atomic orbital electron populations 1.23166 0.77698 1.04341 1.01845 1.86091 1.21967 1.25891 1.88177 1.19216 0.90781 0.85663 0.97537 1.21074 1.00466 0.91099 1.08217 1.21771 0.93688 0.98513 0.94001 1.19583 0.93528 0.93224 1.06908 1.17592 0.84810 0.82809 0.78094 1.90740 1.19799 1.85070 1.47047 1.48236 1.16407 1.09014 1.58451 1.23772 0.82032 1.04379 0.96652 1.21356 0.96418 0.90540 0.86129 0.91058 1.42324 1.10257 1.71788 1.10714 1.19136 0.92590 1.32484 0.93851 0.91052 1.24758 0.95944 1.01507 0.98115 1.69647 1.10778 1.52260 1.24687 0.86301 0.79313 0.79275 0.81449 1.21135 1.21642 1.21232 1.23046 0.97375 0.97766 0.99432 1.21510 0.97261 0.81302 0.96302 0.90633 1.22146 1.01968 1.00929 0.96774 1.20999 1.01561 0.88908 0.96390 1.16696 0.85879 0.82830 1.10576 1.91503 1.76572 1.48442 1.94459 0.92282 0.91981 0.87927 0.83921 0.83111 0.89284 0.92352 0.77960 0.93259 0.89687 0.90651 0.91360 0.91975 0.92870 0.83032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.91 10.35 -19.01 -0.20 -4.10 16 3 C 0.11 1.58 6.70 -38.98 -0.26 1.32 16 4 C -0.19 -2.28 9.01 -39.51 -0.36 -2.64 16 5 C -0.06 -0.82 7.92 -39.21 -0.31 -1.13 16 6 C -0.13 -2.06 5.70 -104.96 -0.60 -2.66 16 7 C 0.58 10.37 7.45 -12.44 -0.09 10.28 16 8 O -0.55 -11.07 15.57 5.29 0.08 -10.99 16 9 N -0.59 -9.82 3.06 -164.20 -0.50 -10.32 16 10 C 0.06 0.89 4.71 -2.52 -0.01 0.88 16 11 C 0.17 2.89 3.69 -65.78 -0.24 2.65 16 12 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 13 N -0.71 -16.34 5.27 -51.35 -0.27 -16.61 16 14 C -0.25 -6.42 9.98 -15.06 -0.15 -6.57 16 15 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 16 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 17 N -0.93 -27.21 13.06 55.49 0.72 -26.49 16 18 Si 0.91 21.56 29.55 -169.99 -5.02 16.53 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 C -0.14 -1.98 6.05 -24.89 -0.15 -2.13 16 23 C 0.14 2.18 3.47 -66.94 -0.23 1.95 16 24 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 25 C -0.16 -2.16 9.11 37.16 0.34 -1.82 16 26 C -0.06 -0.93 9.56 -39.14 -0.37 -1.30 16 27 C 0.06 0.92 7.30 -39.36 -0.29 0.63 16 28 F -0.13 -2.08 17.10 2.25 0.04 -2.04 16 29 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 30 H 0.06 0.45 7.65 -51.93 -0.40 0.06 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.14 1.25 6.27 -52.49 -0.33 0.92 16 33 H 0.15 1.76 4.57 -52.49 -0.24 1.53 16 34 H 0.09 1.53 6.17 -51.93 -0.32 1.21 16 35 H 0.06 0.71 7.28 -51.93 -0.38 0.33 16 36 H 0.39 9.79 7.81 -40.82 -0.32 9.47 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.07 0.88 7.85 -51.93 -0.41 0.48 16 40 H 0.07 1.05 6.77 -51.93 -0.35 0.70 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.15 2.35 7.88 -52.49 -0.41 1.93 16 LS Contribution 356.13 15.07 5.37 5.37 Total: -1.00 -32.01 356.13 -7.25 -39.26 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -5.64 Total: 9.02 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.83 Total: 0.37 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.05 Total: -53.41 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.11 Total: -15.09 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.01 -7.25 -39.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988978536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.959 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds