Wall clock time and date at job start Tue Mar 31 2020 14:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35766 * 117.00203 * 2 1 4 4 C 1.38934 * 119.91234 * 359.97438 * 3 2 1 5 5 C 1.37738 * 120.11100 * 180.02562 * 4 3 2 6 6 C 1.39715 * 119.95481 * 359.97438 * 5 4 3 7 7 C 1.47603 * 120.08284 * 180.02562 * 6 5 4 8 8 O 1.21581 * 120.00153 * 152.59994 * 7 6 5 9 9 N 1.34774 * 119.99807 * 332.59877 * 7 6 5 10 10 C 1.47429 * 125.64728 * 3.67166 * 9 7 6 11 11 C 1.54915 * 104.82912 * 204.08941 * 10 9 7 12 12 H 1.08997 * 111.00228 * 204.88135 * 11 10 9 13 13 N 1.46497 * 111.00560 * 81.05882 * 11 10 9 14 14 C 1.36940 * 119.99749 * 86.45716 * 13 11 10 15 15 H 1.07999 * 120.00026 * 359.97438 * 14 13 11 16 16 C 1.38809 * 119.99975 * 180.02562 * 14 13 11 17 17 N 1.31616 * 120.00079 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99986 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47289 * 59.99679 * 18 16 14 20 20 H 1.48497 * 109.47257 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47147 * 299.99633 * 18 16 14 22 22 C 1.55163 * 101.58026 * 322.98559 * 11 10 9 23 23 C 1.47024 * 125.64985 * 183.35638 * 9 7 6 24 24 H 1.08997 * 109.87969 * 59.55524 * 23 9 7 25 25 C 1.53006 * 109.87771 * 298.39940 * 23 9 7 26 26 C 1.39745 * 119.83785 * 0.02562 * 6 5 4 27 27 C 1.37897 * 119.88214 * 0.25499 * 26 6 5 28 28 F 1.35099 * 119.97415 * 179.72412 * 27 26 6 29 29 H 1.08993 * 109.47307 * 300.00135 * 1 2 3 30 30 H 1.09000 * 109.46465 * 60.00401 * 1 2 3 31 31 H 1.09005 * 109.46578 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.94680 * 0.02748 * 4 3 2 33 33 H 1.08001 * 120.01990 * 180.02562 * 5 4 3 34 34 H 1.08999 * 110.36552 * 322.91806 * 10 9 7 35 35 H 1.08994 * 110.37031 * 85.24960 * 10 9 7 36 36 H 0.96997 * 120.00506 * 266.45016 * 13 11 10 37 37 H 0.97005 * 120.00426 * 180.02562 * 17 16 14 38 38 H 1.09004 * 110.72091 * 153.86515 * 22 11 10 39 39 H 1.08997 * 110.72210 * 276.96682 * 22 11 10 40 40 H 1.08997 * 109.47047 * 61.45381 * 25 23 9 41 41 H 1.09002 * 109.46693 * 181.45145 * 25 23 9 42 42 H 1.09000 * 109.47182 * 301.44479 * 25 23 9 43 43 H 1.07999 * 120.05550 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2870 2.3737 -0.0005 5 6 1.9081 3.6031 -0.0011 6 6 3.3031 3.6799 -0.0005 7 6 3.9717 4.9959 -0.0005 8 8 5.0802 5.1146 0.4844 9 7 3.3532 6.0659 -0.5382 10 6 1.9854 6.0812 -1.0881 11 6 1.9749 7.2611 -2.0918 12 1 0.9651 7.6475 -2.2299 13 7 2.5626 6.8652 -3.3740 14 6 1.7818 6.2756 -4.3321 15 1 0.7329 6.1022 -4.1424 16 6 2.3388 5.9000 -5.5468 17 7 3.6172 6.1109 -5.7779 18 14 1.2735 5.0963 -6.8540 19 1 0.1744 6.0200 -7.2337 20 1 2.1010 4.7930 -8.0492 21 1 0.6984 3.8364 -6.3182 22 6 2.8728 8.2967 -1.3646 23 6 3.9284 7.4127 -0.6674 24 1 4.8340 7.3725 -1.2727 25 6 4.2499 7.9763 0.7183 26 6 4.0640 2.5078 0.0000 27 6 3.4352 1.2805 -0.0053 28 9 4.1690 0.1462 -0.0104 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 0.2086 2.3146 -0.0005 33 1 1.3171 4.5071 -0.0011 34 1 1.7729 5.1439 -1.6024 35 1 1.2590 6.2523 -0.2938 36 1 3.5047 7.0207 -3.5444 37 1 4.0064 5.8487 -6.6269 38 1 3.3430 8.9702 -2.0812 39 1 2.2961 8.8589 -0.6302 40 1 4.9868 7.3393 1.2075 41 1 4.6518 8.9844 0.6162 42 1 3.3403 8.0068 1.3181 43 1 5.1426 2.5631 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988978536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:37 Heat of formation + Delta-G solvation = -83.079798 kcal Electronic energy + Delta-G solvation = -27814.640711 eV Core-core repulsion = 23774.776113 eV Total energy + Delta-G solvation = -4039.864598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.96869 -41.73454 -40.75662 -38.99129 -38.05914 -35.78102 -33.43148 -33.04154 -31.92616 -31.00596 -30.10437 -28.36396 -26.94638 -25.74719 -24.91800 -23.89005 -22.84213 -21.52650 -20.48142 -19.27950 -19.21557 -18.70865 -18.10472 -17.57540 -17.24910 -16.83467 -16.31976 -16.25515 -16.13927 -15.92094 -15.46833 -15.36892 -15.28871 -14.86299 -14.71425 -14.36486 -13.93907 -13.61400 -13.45085 -13.33132 -13.23248 -13.08962 -12.91994 -12.82435 -12.66570 -12.35019 -12.26425 -12.15899 -12.13419 -11.83024 -11.60509 -11.47736 -11.06306 -10.86421 -10.15427 -9.68583 -9.36551 -8.93568 -7.90783 -5.19071 -0.31325 -0.02863 1.49346 1.51325 1.57183 1.61946 1.93532 2.07552 2.54973 2.58624 3.06145 3.36938 3.41537 3.56266 3.75836 3.86856 3.88847 3.96699 3.99493 4.16261 4.29903 4.35575 4.40474 4.40892 4.50655 4.62466 4.69854 4.73162 4.76564 4.79432 4.84691 4.92052 4.98563 5.06492 5.14549 5.22936 5.26439 5.37326 5.39734 5.54241 5.58685 6.14469 6.30015 6.54121 7.09450 7.36882 8.12987 8.33913 9.32746 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008797 B = 0.005143 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3181.965913 B = 5443.484965 C = 7416.160135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.326 6.326 3 C 0.120 3.880 4 C -0.178 4.178 5 C -0.052 4.052 6 C -0.153 4.153 7 C 0.569 3.431 8 O -0.584 6.584 9 N -0.591 5.591 10 C 0.064 3.936 11 C 0.155 3.845 12 H 0.093 0.907 13 N -0.727 5.727 14 C -0.230 4.230 15 H 0.089 0.911 16 C -0.078 4.078 17 N -0.973 5.973 18 Si 0.965 3.035 19 H -0.273 1.273 20 H -0.307 1.307 21 H -0.278 1.278 22 C -0.121 4.121 23 C 0.133 3.867 24 H 0.039 0.961 25 C -0.148 4.148 26 C -0.072 4.072 27 C 0.037 3.963 28 F -0.141 7.141 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.123 0.877 32 H 0.185 0.815 33 H 0.174 0.826 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.369 0.631 37 H 0.247 0.753 38 H 0.075 0.925 39 H 0.117 0.883 40 H 0.041 0.959 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.257 -3.701 15.874 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.239 6.239 3 C 0.073 3.927 4 C -0.196 4.196 5 C -0.070 4.070 6 C -0.157 4.157 7 C 0.360 3.640 8 O -0.466 6.466 9 N -0.322 5.322 10 C -0.061 4.061 11 C 0.045 3.955 12 H 0.110 0.890 13 N -0.365 5.365 14 C -0.362 4.362 15 H 0.107 0.893 16 C -0.270 4.270 17 N -0.624 5.624 18 Si 0.795 3.205 19 H -0.199 1.199 20 H -0.234 1.234 21 H -0.204 1.204 22 C -0.160 4.160 23 C 0.030 3.970 24 H 0.057 0.943 25 C -0.206 4.206 26 C -0.092 4.092 27 C 0.017 3.983 28 F -0.120 7.120 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.141 0.859 32 H 0.202 0.798 33 H 0.191 0.809 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.200 0.800 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.135 0.865 40 H 0.061 0.939 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.723 -3.984 16.045 19.705 hybrid contribution 0.786 -0.796 -1.313 1.725 sum -9.936 -4.781 14.732 18.401 Atomic orbital electron populations 1.23578 0.74972 1.06373 1.03339 1.86090 1.24771 1.25402 1.87685 1.19336 0.90206 0.86908 0.96283 1.21477 1.02282 0.89619 1.06204 1.22007 0.92381 1.00022 0.92593 1.19566 0.94952 0.91994 1.09154 1.17981 0.84550 0.83729 0.77774 1.90708 1.21407 1.85677 1.48844 1.48347 1.17009 1.09049 1.57752 1.23776 0.82295 1.02564 0.97462 1.21726 0.97519 0.91989 0.84251 0.88954 1.42568 1.09389 1.71888 1.12704 1.19633 0.93353 1.29510 0.93704 0.89291 1.25520 0.96932 1.03808 1.00700 1.69825 1.12732 1.55160 1.24673 0.85328 0.77761 0.78784 0.78613 1.19890 1.23409 1.20418 1.22987 0.96564 0.96815 0.99606 1.21597 0.96517 0.81525 0.97363 0.94273 1.22037 1.02278 1.01193 0.95100 1.20947 1.01212 0.89658 0.97400 1.16880 0.87022 0.82282 1.12123 1.91464 1.77036 1.48805 1.94703 0.90066 0.91008 0.85917 0.79786 0.80916 0.90786 0.87331 0.80013 0.94475 0.90623 0.86466 0.93941 0.89957 0.90765 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -7.55 10.35 -90.93 -0.94 -8.49 16 3 C 0.12 3.10 6.70 22.66 0.15 3.26 16 4 C -0.18 -3.65 9.01 22.32 0.20 -3.45 16 5 C -0.05 -1.25 7.92 22.51 0.18 -1.07 16 6 C -0.15 -4.89 5.70 -20.08 -0.11 -5.01 16 7 C 0.57 20.72 7.45 86.72 0.65 21.36 16 8 O -0.58 -24.81 15.57 -3.97 -0.06 -24.87 16 9 N -0.59 -19.04 3.06 -791.66 -2.43 -21.47 16 10 C 0.06 1.75 4.71 86.86 0.41 2.16 16 11 C 0.16 4.87 3.69 46.39 0.17 5.05 16 12 H 0.09 2.59 8.13 -2.39 -0.02 2.57 16 13 N -0.73 -32.88 5.27 -316.36 -1.67 -34.55 16 14 C -0.23 -11.55 9.98 84.03 0.84 -10.71 16 15 H 0.09 4.07 7.83 -2.91 -0.02 4.05 16 16 C -0.08 -4.26 5.50 84.86 0.47 -3.80 16 17 N -0.97 -58.92 13.06 21.65 0.28 -58.64 16 18 Si 0.97 44.33 29.55 68.60 2.03 46.36 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.31 -14.79 7.11 99.48 0.71 -14.08 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 22 C -0.12 -3.17 6.05 31.79 0.19 -2.97 16 23 C 0.13 4.06 3.47 45.35 0.16 4.22 16 24 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 25 C -0.15 -3.74 9.11 71.98 0.66 -3.08 16 26 C -0.07 -2.39 9.56 22.55 0.22 -2.17 16 27 C 0.04 1.14 7.30 22.41 0.16 1.31 16 28 F -0.14 -4.65 17.10 44.97 0.77 -3.88 16 29 H 0.08 0.63 7.65 -2.39 -0.02 0.61 16 30 H 0.07 0.74 7.65 -2.39 -0.02 0.72 16 31 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.19 2.20 6.27 -2.91 -0.02 2.18 16 33 H 0.17 3.26 4.57 -2.91 -0.01 3.25 16 34 H 0.07 2.31 6.17 -2.39 -0.01 2.29 16 35 H 0.11 1.98 7.28 -2.39 -0.02 1.96 16 36 H 0.37 19.11 7.81 -92.71 -0.72 18.38 16 37 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 38 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 39 H 0.12 2.14 7.85 -2.39 -0.02 2.12 16 40 H 0.04 1.30 6.77 -2.39 -0.02 1.29 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.14 4.73 7.88 -2.91 -0.02 4.70 16 Total: -1.00 -73.79 356.13 3.76 -70.04 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.33 Total: 29.18 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 5.44 Total: 6.32 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -3.81 Total: -114.65 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -1.00 Total: -33.36 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.77 Total: -3.88 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -73.79 3.76 -70.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988978536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.045 kcal (2) G-P(sol) polarization free energy of solvation -73.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds