Wall clock time and date at job start Tue Mar 31 2020 14:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35695 * 117.00298 * 2 1 4 4 C 1.38689 * 120.12288 * 0.25995 * 3 2 1 5 5 C 1.38051 * 120.11309 * 180.27747 * 4 3 2 6 6 C 1.38731 * 120.36837 * 359.76090 * 5 4 3 7 7 F 1.35096 * 119.87799 * 179.97438 * 6 5 4 8 8 C 1.37989 * 120.24422 * 359.96154 * 6 5 4 9 9 C 1.39725 * 119.88155 * 0.02562 * 8 6 5 10 10 C 1.47540 * 120.17847 * 180.02562 * 9 8 6 11 11 O 1.21586 * 119.99940 * 135.66011 * 10 9 8 12 12 N 1.34772 * 119.99843 * 315.65898 * 10 9 8 13 13 C 1.47020 * 125.65206 * 354.84649 * 12 10 9 14 14 C 1.54321 * 107.40366 * 181.10382 * 13 12 10 15 15 H 1.09008 * 110.71811 * 263.74761 * 14 13 12 16 16 N 1.46504 * 110.72293 * 140.48070 * 14 13 12 17 17 C 1.36932 * 120.00209 * 86.45140 * 16 14 13 18 18 H 1.07996 * 120.00056 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99915 * 180.02562 * 17 16 14 20 20 N 1.31625 * 119.99801 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00134 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47080 * 89.99992 * 21 19 17 23 23 H 1.48493 * 109.47604 * 210.00140 * 21 19 17 24 24 H 1.48503 * 109.47066 * 330.00346 * 21 19 17 25 25 C 1.55153 * 102.94452 * 22.11244 * 14 13 12 26 26 C 1.47747 * 125.82288 * 174.75210 * 12 10 9 27 27 H 1.09007 * 110.43425 * 274.71220 * 26 12 10 28 28 C 1.53004 * 110.37898 * 36.97518 * 26 12 10 29 29 H 1.08999 * 109.47329 * 59.99732 * 1 2 3 30 30 H 1.08998 * 109.47111 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46974 * 299.99839 * 1 2 3 32 32 H 1.08005 * 119.94410 * 0.02562 * 4 3 2 33 33 H 1.07996 * 119.82092 * 179.74429 * 5 4 3 34 34 H 1.07996 * 120.05656 * 180.02562 * 8 6 5 35 35 H 1.08994 * 109.88561 * 61.60833 * 13 12 10 36 36 H 1.09001 * 109.88114 * 300.59250 * 13 12 10 37 37 H 0.97007 * 119.99551 * 266.45046 * 16 14 13 38 38 H 0.96998 * 119.99756 * 180.02562 * 20 19 17 39 39 H 1.08999 * 111.00410 * 82.57581 * 25 14 13 40 40 H 1.09001 * 111.00820 * 206.38662 * 25 14 13 41 41 H 1.09005 * 109.46682 * 175.42951 * 28 26 12 42 42 H 1.09000 * 109.47502 * 295.42821 * 28 26 12 43 43 H 1.09003 * 109.47286 * 55.43807 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2923 2.3738 0.0054 5 6 1.9193 3.6037 -0.0003 6 6 3.3042 3.6849 -0.0066 7 9 3.9075 4.8937 -0.0128 8 6 4.0679 2.5356 -0.0063 9 6 3.4440 1.2854 -0.0003 10 6 4.2541 0.0523 0.0007 11 8 3.9612 -0.8670 0.7405 12 7 5.3189 -0.0550 -0.8186 13 6 5.7212 0.9288 -1.8343 14 6 6.9738 0.3734 -2.5442 15 1 7.8815 0.7869 -2.1045 16 7 6.9203 0.6500 -3.9819 17 6 7.3874 1.8420 -4.4677 18 1 7.7949 2.5784 -3.7910 19 6 7.3362 2.1042 -5.8299 20 7 6.8381 1.2072 -6.6545 21 14 7.9727 3.7305 -6.4926 22 1 9.4143 3.5997 -6.8242 23 1 7.2148 4.0974 -7.7157 24 1 7.7952 4.7874 -5.4646 25 6 6.8787 -1.1516 -2.2746 26 6 6.2786 -1.1780 -0.8468 27 1 7.0616 -1.0282 -0.1033 28 6 5.5555 -2.5032 -0.5974 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 0.2137 2.3186 0.0101 33 1 1.3285 4.5077 -0.0002 34 1 5.1457 2.6024 -0.0108 35 1 5.9569 1.8797 -1.3565 36 1 4.9164 1.0664 -2.5564 37 1 6.5539 -0.0114 -4.5897 38 1 6.8027 1.3903 -7.6064 39 1 6.2104 -1.6335 -2.9883 40 1 7.8655 -1.6140 -2.2930 41 1 6.2613 -3.3273 -0.7016 42 1 5.1395 -2.5063 0.4100 43 1 4.7508 -2.6202 -1.3233 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989264739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:14 Heat of formation + Delta-G solvation = -64.652741 kcal Electronic energy + Delta-G solvation = -27809.922653 eV Core-core repulsion = 23770.857113 eV Total energy + Delta-G solvation = -4039.065541 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.87221 -40.71440 -39.45185 -37.40053 -37.05736 -34.15999 -32.52734 -31.39330 -30.63058 -29.94171 -28.40098 -27.42390 -25.48629 -24.48199 -23.65144 -22.49443 -21.55995 -20.27234 -19.45728 -18.09574 -17.46549 -17.18661 -17.11635 -16.26486 -15.99886 -15.82221 -15.47085 -15.20609 -14.82623 -14.59937 -14.31175 -13.91737 -13.63030 -13.38055 -13.32830 -13.11271 -12.85156 -12.66696 -12.54707 -12.12045 -11.97648 -11.87854 -11.70471 -11.36199 -11.24534 -11.11116 -10.97281 -10.75995 -10.63902 -10.31502 -10.04083 -9.75797 -9.48988 -9.32725 -8.99237 -8.32883 -8.22366 -7.10414 -5.85678 -3.16649 0.68913 1.03244 2.79967 3.02383 3.12397 3.39369 3.45268 3.46410 3.53177 4.13591 4.36308 4.52116 4.52955 4.73149 4.81679 4.93710 4.98813 5.10469 5.13367 5.24989 5.25508 5.31180 5.48909 5.51805 5.58936 5.67866 5.77551 5.85909 5.88144 5.90141 5.91290 6.13598 6.14862 6.23737 6.42797 6.47474 6.50702 6.53268 6.72585 6.87898 7.11607 7.62564 7.81738 8.31481 8.39881 9.43831 9.97490 10.32349 11.36305 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010578 B = 0.004463 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.313664 B = 6271.974721 C = 7786.367830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.292 6.292 3 C 0.167 3.833 4 C -0.190 4.190 5 C -0.093 4.093 6 C 0.058 3.942 7 F -0.137 7.137 8 C -0.080 4.080 9 C -0.128 4.128 10 C 0.582 3.418 11 O -0.529 6.529 12 N -0.605 5.605 13 C 0.070 3.930 14 C 0.172 3.828 15 H 0.066 0.934 16 N -0.713 5.713 17 C -0.249 4.249 18 H 0.073 0.927 19 C -0.007 4.007 20 N -0.929 5.929 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.280 1.280 25 C -0.136 4.136 26 C 0.138 3.862 27 H 0.074 0.926 28 C -0.158 4.158 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.151 0.849 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.387 0.613 38 H 0.257 0.743 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.853 -0.560 14.814 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.203 6.203 3 C 0.119 3.881 4 C -0.208 4.208 5 C -0.112 4.112 6 C 0.038 3.962 7 F -0.115 7.115 8 C -0.099 4.099 9 C -0.132 4.132 10 C 0.370 3.630 11 O -0.406 6.406 12 N -0.339 5.339 13 C -0.056 4.056 14 C 0.060 3.940 15 H 0.084 0.916 16 N -0.353 5.353 17 C -0.380 4.380 18 H 0.091 0.909 19 C -0.204 4.204 20 N -0.577 5.577 21 Si 0.737 3.263 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.175 4.175 26 C 0.035 3.965 27 H 0.092 0.908 28 C -0.216 4.216 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.169 0.831 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.222 0.778 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.886 -1.035 15.170 18.700 hybrid contribution -0.022 1.312 -0.811 1.542 sum -10.908 0.276 14.359 18.034 Atomic orbital electron populations 1.23159 0.78248 1.04434 1.01314 1.86241 1.21272 1.25576 1.87242 1.18915 0.90714 0.84960 0.93536 1.21022 1.00517 0.90986 1.08322 1.21041 0.92715 0.98770 0.98698 1.17344 0.90837 0.80546 1.07461 1.91519 1.83677 1.42005 1.94329 1.21268 1.01301 0.89677 0.97652 1.19046 0.90825 0.93837 1.09488 1.17437 0.79369 0.86122 0.80105 1.90726 1.69179 1.39272 1.41448 1.48597 1.26292 1.22848 1.36175 1.23477 1.00978 0.91307 0.89853 1.21178 0.94071 0.91934 0.86818 0.91595 1.42379 1.73700 1.19228 0.99960 1.19246 1.33787 0.93713 0.91223 0.90931 1.24760 1.01343 0.98234 0.96068 1.69664 1.50618 1.34517 1.02876 0.86202 0.78331 0.83275 0.78451 1.21577 1.21728 1.20590 1.23141 1.01275 0.98334 0.94752 1.21943 0.90329 0.86626 0.97585 0.90817 1.22126 1.00188 0.95208 1.04054 0.92398 0.87907 0.92459 0.83936 0.84095 0.83135 0.92251 0.90803 0.77830 0.93346 0.90459 0.90073 0.92449 0.90134 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.29 -4.02 9.40 -31.96 -0.30 -4.32 16 3 C 0.17 2.29 6.67 -38.72 -0.26 2.03 16 4 C -0.19 -2.02 9.03 -39.48 -0.36 -2.38 16 5 C -0.09 -1.01 10.01 -39.47 -0.39 -1.40 16 6 C 0.06 0.75 7.28 -39.49 -0.29 0.46 16 7 F -0.14 -1.88 17.26 2.25 0.04 -1.84 16 8 C -0.08 -1.12 8.41 -39.12 -0.33 -1.45 16 9 C -0.13 -1.96 5.40 -104.85 -0.57 -2.52 16 10 C 0.58 9.96 7.01 -12.47 -0.09 9.88 16 11 O -0.53 -10.04 13.97 -7.88 -0.11 -10.15 16 12 N -0.61 -9.93 3.25 -164.02 -0.53 -10.46 16 13 C 0.07 1.21 5.64 -3.07 -0.02 1.20 16 14 C 0.17 3.20 3.59 -66.10 -0.24 2.97 16 15 H 0.07 1.21 8.12 -51.92 -0.42 0.79 16 16 N -0.71 -16.86 5.18 -51.65 -0.27 -17.13 16 17 C -0.25 -6.56 9.98 -15.06 -0.15 -6.71 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 20 N -0.93 -27.18 13.06 55.49 0.72 -26.45 16 21 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C -0.14 -2.15 6.11 -24.59 -0.15 -2.30 16 26 C 0.14 2.07 3.80 -66.24 -0.25 1.81 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 28 C -0.16 -2.29 8.53 37.16 0.32 -1.97 16 29 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.37 7.65 -51.92 -0.40 -0.02 16 32 H 0.14 1.06 6.30 -52.48 -0.33 0.73 16 33 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.15 2.02 6.10 -52.49 -0.32 1.70 16 35 H 0.06 0.97 5.71 -51.93 -0.30 0.68 16 36 H 0.07 1.46 8.03 -51.93 -0.42 1.04 16 37 H 0.39 9.84 7.71 -40.82 -0.31 9.52 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.08 1.30 7.92 -51.93 -0.41 0.88 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.28 6.12 -51.93 -0.32 0.96 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 355.98 15.07 5.36 5.36 Total: -1.00 -31.70 355.98 -7.69 -39.39 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.71 Total: 8.40 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -1.87 Total: 0.50 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.08 Total: -54.04 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.41 Total: -14.47 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.70 -7.69 -39.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989264739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.265 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds